View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_low_36 (Length: 243)
Name: NF6635_low_36
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_36 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 47292846 - 47292620
Alignment:
| Q |
17 |
cttctttcagtttgtgtgtacttgatagacatcatctccatttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagc |
116 |
Q |
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| T |
47292846 |
cttctttcagtttgtgtgtacttgatagacatcatctccatttatgaagttttcaatatcttctcttctctttcttgtagaagaagataccttatccagc |
47292747 |
T |
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| Q |
117 |
caatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagtgctacaac |
216 |
Q |
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| T |
47292746 |
caatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagtgctacaac |
47292647 |
T |
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| Q |
217 |
ttctggaattacagaattgagaccacc |
243 |
Q |
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| T |
47292646 |
ttctggaattacagaattgagaccacc |
47292620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 169
Target Start/End: Original strand, 45862519 - 45862594
Alignment:
| Q |
94 |
tagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcatttcactatgatcttc |
169 |
Q |
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| T |
45862519 |
tagaagaagagactttatccagccaatttgaatagatattatccagtaatgcagtcagcatctcacgatgatcttc |
45862594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 168
Target Start/End: Original strand, 56209347 - 56209461
Alignment:
| Q |
55 |
catttatgaagttttcaatatctt-ctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatca |
153 |
Q |
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| T |
56209347 |
catttatgaaattgtcaatatctttctattttctttcctcttgcagaagagactttatcgagccaatttgaatagatattatccaacaatgcagtcagca |
56209446 |
T |
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| Q |
154 |
tttcactatgatctt |
168 |
Q |
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| T |
56209447 |
tctcacgatgttctt |
56209461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 45862404 - 45862444
Alignment:
| Q |
55 |
catttatgaagttttcaatatcttctcttttctttcttgta |
95 |
Q |
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| T |
45862404 |
catttatgaagttctcaacatcttctcttttctttcctgta |
45862444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 208
Target Start/End: Original strand, 7962518 - 7962669
Alignment:
| Q |
55 |
catttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgtcctgcaaagcagtcatcat |
154 |
Q |
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| T |
7962518 |
catttatgaaattttcaatatcttcttttttctttccaatagaagaagagaccttatccagccaatttgaataaatactgtcctgcaatgcagtcgtcgt |
7962617 |
T |
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| Q |
155 |
ttcactatgatcttcgatttgttcacctctactacccttttatattcaccaagt |
208 |
Q |
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| T |
7962618 |
ctcacgataatctttgatttgttgacctc--ctacccatctatatttaccaagt |
7962669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 35803176 - 35803256
Alignment:
| Q |
55 |
catttatgaagttttcaatatcttctcttttctttcttgtagaagaagacaccttatccagccaatttgaataaatattgt |
135 |
Q |
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| T |
35803176 |
catttatgaagttttgaacttcttctcttttcttccctctagaagaagagactttatccagccaatttgaatagatattgt |
35803256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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