View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6635_low_39 (Length: 237)

Name: NF6635_low_39
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6635_low_39
NF6635_low_39
[»] chr1 (20 HSPs)
chr1 (19-218)||(27442320-27442519)
chr1 (19-218)||(32715693-32715892)
chr1 (48-218)||(17971338-17971510)
chr1 (19-213)||(28723912-28724106)
chr1 (19-210)||(13603078-13603272)
chr1 (20-113)||(45691550-45691643)
chr1 (22-218)||(28165076-28165273)
chr1 (67-218)||(31152435-31152585)
chr1 (27-218)||(36437155-36437347)
chr1 (67-218)||(3574726-3574880)
chr1 (77-214)||(39150187-39150324)
chr1 (22-218)||(42745544-42745740)
chr1 (93-219)||(11435552-11435678)
chr1 (67-217)||(31181047-31181199)
chr1 (67-218)||(9851809-9851960)
chr1 (66-218)||(46443702-46443853)
chr1 (145-214)||(17988358-17988427)
chr1 (88-218)||(28469934-28470064)
chr1 (167-218)||(31003677-31003728)
chr1 (67-122)||(32800405-32800462)
[»] chr4 (13 HSPs)
chr4 (27-217)||(25376800-25376991)
chr4 (123-218)||(54863924-54864020)
chr4 (77-218)||(18838752-18838893)
chr4 (22-201)||(31707303-31707480)
chr4 (69-217)||(42312399-42312556)
chr4 (27-173)||(25382395-25382541)
chr4 (143-217)||(21128097-21128171)
chr4 (119-197)||(38216015-38216093)
chr4 (34-122)||(34326143-34326230)
chr4 (78-133)||(32599765-32599820)
chr4 (159-218)||(33721704-33721763)
chr4 (145-218)||(16572252-16572325)
chr4 (97-150)||(40413086-40413139)
[»] chr6 (10 HSPs)
chr6 (20-207)||(9425503-9425692)
chr6 (19-210)||(6657887-6658077)
chr6 (19-218)||(19780231-19780431)
chr6 (22-218)||(180340-180537)
chr6 (67-198)||(34837146-34837278)
chr6 (22-122)||(12143670-12143770)
chr6 (64-217)||(1856752-1856905)
chr6 (22-94)||(5428827-5428899)
chr6 (80-217)||(7926806-7926944)
chr6 (146-218)||(3611562-3611633)
[»] chr2 (29 HSPs)
chr2 (27-218)||(7011095-7011284)
chr2 (27-218)||(14200323-14200514)
chr2 (19-196)||(32872363-32872541)
chr2 (19-156)||(45723865-45724003)
chr2 (22-120)||(34309311-34309409)
chr2 (66-194)||(31404969-31405098)
chr2 (22-216)||(38214115-38214310)
chr2 (67-216)||(39063590-39063740)
chr2 (64-217)||(16781263-16781416)
chr2 (22-218)||(38496473-38496670)
chr2 (68-216)||(40503877-40504026)
chr2 (67-214)||(3268802-3268950)
chr2 (67-214)||(3269361-3269509)
chr2 (67-214)||(3269920-3270068)
chr2 (68-218)||(40442718-40442869)
chr2 (22-212)||(40664240-40664432)
chr2 (33-218)||(35310806-35310994)
chr2 (22-111)||(13027910-13027998)
chr2 (119-194)||(34262733-34262809)
chr2 (38-215)||(2287486-2287663)
chr2 (37-218)||(19285880-19286062)
chr2 (136-217)||(4015854-4015934)
chr2 (22-91)||(21229611-21229680)
chr2 (167-216)||(21794858-21794907)
chr2 (38-122)||(2315509-2315593)
chr2 (162-218)||(3711930-3711985)
chr2 (174-217)||(44883267-44883310)
chr2 (77-134)||(31365047-31365104)
chr2 (67-134)||(21794921-21794989)
[»] chr8 (16 HSPs)
chr8 (26-217)||(38209474-38209666)
chr8 (20-213)||(36408134-36408327)
chr8 (77-218)||(36054816-36054958)
chr8 (22-218)||(8251236-8251433)
chr8 (64-218)||(31658853-31659007)
chr8 (26-192)||(5923844-5924015)
chr8 (67-218)||(16890264-16890419)
chr8 (64-218)||(1445353-1445508)
chr8 (22-171)||(2207818-2207967)
chr8 (67-211)||(2152328-2152473)
chr8 (159-218)||(40694232-40694291)
chr8 (67-120)||(30653627-30653680)
chr8 (77-134)||(30870747-30870804)
chr8 (67-174)||(43698930-43699036)
chr8 (67-120)||(2520129-2520182)
chr8 (73-133)||(37993221-37993281)
[»] chr3 (26 HSPs)
chr3 (27-193)||(30041262-30041429)
chr3 (22-156)||(43105097-43105233)
chr3 (19-172)||(35104715-35104868)
chr3 (22-175)||(30577831-30577984)
chr3 (20-207)||(24650132-24650323)
chr3 (19-134)||(49983793-49983910)
chr3 (22-217)||(22923629-22923828)
chr3 (136-213)||(49983561-49983638)
chr3 (67-213)||(41559992-41560133)
chr3 (147-217)||(43105935-43106004)
chr3 (67-217)||(35455309-35455456)
chr3 (27-218)||(40344888-40345078)
chr3 (67-218)||(43320133-43320279)
chr3 (124-217)||(32211842-32211936)
chr3 (22-218)||(45261364-45261558)
chr3 (67-218)||(17003573-17003724)
chr3 (17-122)||(42279182-42279287)
chr3 (94-218)||(38854614-38854739)
chr3 (67-218)||(8825355-8825505)
chr3 (145-216)||(25295127-25295198)
chr3 (66-121)||(27828544-27828599)
chr3 (26-218)||(46918418-46918610)
chr3 (77-192)||(49787770-49787886)
chr3 (63-130)||(52596618-52596686)
chr3 (22-110)||(25294809-25294897)
chr3 (165-217)||(50452386-50452438)
[»] scaffold0015 (1 HSPs)
scaffold0015 (19-217)||(38781-38979)
[»] chr7 (25 HSPs)
chr7 (27-218)||(10599706-10599898)
chr7 (19-218)||(14568357-14568557)
chr7 (67-213)||(41508105-41508252)
chr7 (19-122)||(10409790-10409895)
chr7 (22-217)||(14658727-14658921)
chr7 (121-218)||(42935454-42935552)
chr7 (68-217)||(7307441-7307592)
chr7 (26-177)||(15033262-15033410)
chr7 (22-134)||(17757336-17757448)
chr7 (144-218)||(2195805-2195879)
chr7 (136-217)||(17757477-17757558)
chr7 (37-113)||(42935834-42935911)
chr7 (73-218)||(14650104-14650247)
chr7 (73-122)||(13777737-13777786)
chr7 (64-217)||(37048576-37048735)
chr7 (64-120)||(45072511-45072567)
chr7 (104-217)||(46101245-46101359)
chr7 (144-213)||(12506713-12506782)
chr7 (67-218)||(20949073-20949224)
chr7 (27-102)||(15968471-15968546)
chr7 (159-213)||(46341502-46341556)
chr7 (144-213)||(12485281-12485350)
chr7 (78-194)||(18145799-18145916)
chr7 (34-102)||(20022046-20022114)
chr7 (94-173)||(35333328-35333405)
[»] scaffold0006 (1 HSPs)
scaffold0006 (19-210)||(131735-131929)
[»] scaffold1809 (1 HSPs)
scaffold1809 (26-214)||(452-641)
[»] chr5 (13 HSPs)
chr5 (22-217)||(17686233-17686427)
chr5 (67-198)||(11983578-11983709)
chr5 (113-215)||(3257251-3257354)
chr5 (80-213)||(6688792-6688928)
chr5 (22-214)||(18705003-18705196)
chr5 (22-212)||(2225586-2225777)
chr5 (73-218)||(17693562-17693705)
chr5 (77-201)||(19296165-19296288)
chr5 (145-218)||(27193011-27193084)
chr5 (27-114)||(33432787-33432873)
chr5 (67-122)||(39569147-39569202)
chr5 (66-134)||(14417941-14418009)
chr5 (37-133)||(19090208-19090303)
[»] scaffold0024 (1 HSPs)
scaffold0024 (22-218)||(154340-154537)
[»] scaffold0836 (1 HSPs)
scaffold0836 (22-218)||(3022-3219)
[»] scaffold0088 (1 HSPs)
scaffold0088 (68-218)||(51273-51424)
[»] scaffold0026 (1 HSPs)
scaffold0026 (122-175)||(68841-68895)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 27442320 - 27442519
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaa 118  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  27442320 aagaaaccaaaaattatcaaaaccaagacaatcattagttgttgcaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaa 27442419  T
Q  119 tatatccactaatattgaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27442420 tatacccattaatattgaaagaccaacattaaatgagggttagaaaagtcttttaaacactaaatatactttaaaagttgtgattttttcttataaatag 27442519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 32715892 - 32715693
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaa 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  32715892 aagaaaccaaaaatcatcaaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatatatcctcataaaaatttgtgaagtattaaa 32715793  T
Q  119 tatatccactaatattg-aaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    |||| |||||||||||| ||||| |||||||||||||||  |||||||| |||||||||| |||||  ||||||||| |||||| |||||||||||||||    
T  32715792 tatacccactaatattgaaaagatcaacattaaatgagggctagaaaagacttttaaacaataaat-gaccttaaaatttgtgactttttcttataaata 32715694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 48 - 218
Target Start/End: Original strand, 17971338 - 17971510
Alignment:
Q  48 aatcatcagttgttgcaatttttt-gaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaac 145  Q
    |||||| |||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||||||||||| |||||||    
T  17971338 aatcatgagttgttgtaatttttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatacacactaatattgaaaagaccaac 17971437  T
Q  146 attaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  17971438 attaaatgagggttagaaaagtcttttaaacaataaatataccttaaaagttgtgactttttcttataaatag 17971510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 28723912 - 28724106
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaa 118  Q
    |||||| |||||||||||| ||||||||||||||| ||  |||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  28723912 aagaaatcaaaaatcatcataaccaagacaatcattagcggttgtaattttttgaatgcttttacagatataccctcataaaaatttgtgaagtattaaa 28724011  T
Q  119 tatatccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttata 213  Q
    |||| |||||||||||  |||||  |||||||| ||||| |||||||||||||||||| | |||||  || || |||||||||| |||||||||||    
T  28724012 tataaccactaatattaaaaagataaacattaattgagggttagaaaagtcttttaaataataaatgcacatt-aaagttgtgactttttcttata 28724106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 13603272 - 13603078
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgttttt-acaaatatactctcataaaaatttgtgaagt---at 114  Q
    |||||| |||||||||||||||| ||||||||||| |||  ||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||   ||    
T  13603272 aagaaagcaaaaatcatcaaaacgaagacaatcattagtaattgtaattttt-gaatgttttttacaaatataccctcataaaaatttgtgaagtattat 13603174  T
Q  115 taaatatatccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttctt 210  Q
    |||||||| |||||||||||  |||||| ||| || | ||| | ||||||||||||||| |||| |||||  ||||| |||||||||| ||||||||    
T  13603173 taaatataaccactaatattaaaaagacaaacttttattgaaggttagaaaagtcttttgaacaataaatgcacctt-aaagttgtgactttttctt 13603078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 45691550 - 45691643
Alignment:
Q  20 agaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagta 113  Q
    ||||| ||||||||||||||||||||||||| || |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  45691550 agaaatcaaaaatcatcaaaaccaagacaattattagttgttgtaattttttgaatatttttacaaatataccctcataaaaatttgtgaagta 45691643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 28165076 - 28165273
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    ||||||| || ||| |||||||| |||||||||| || ||| |||||||||||| ||||||||||||||| || ||||||| |||||||  ||||||||     
T  28165076 aaaccaagaaacattaaaaccaatacaatcatcaattattgtaattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatac 28165175  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||| || ||||||  |||||  || | | |||||||  || |||| |||||||| || ||| |||||||| ||||||||||  |||| ||||||||||    
T  28165176 atctaccaatattaaaaagataaagacttaatgaggggtaaaaaaatcttttaagcaataactatacctttaaagttgtgacattttattataaatag 28165273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 31152585 - 31152435
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaagaccaacattaaatgaggattagaaaag 166  Q
    ||||||||| ||||||||||||||| |||||||||||  |||||  ||||||||  | |||||||||| |||||  ||||||||||||||  ||| ||||    
T  31152585 tttttgaatatttttacaaatatacgctcataaaaat--gtgaaacattaaatacgttcactaatattaaaagagaaacattaaatgaggggtagcaaag 31152488  T
Q  167 tcttttaaacactaaatataccttaaaagttgtgat-tttttcttataaatag 218  Q
    |||||||| || |||  | | ||||||||||||||| ||| | ||||||||||    
T  31152487 tcttttaagcaataacgacatcttaaaagttgtgatatttcttttataaatag 31152435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 36437155 - 36437347
Alignment:
Q  27 aaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcc- 125  Q
    ||||| ||||||||||||  | | ||| | |||||| || ||||| ||  ||||||||||||||| || ||| ||  |||||||  |||||||| ||||     
T  36437155 aaaaaccatcaaaaccaatgccagcattaattgttgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatacatccc 36437254  T
Q  126 actaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||| ||| |||  |||||||||||||  || ||||||||||||| || ||| ||| |||||||||||||||  |||||||||||||||    
T  36437255 actaatattaaaaagacagacattaaatgagggataaaaaagtcttttaagcaataactat-ccttaaaagttgtgacattttcttataaatag 36437347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 3574880 - 3574726
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcc--actaatattgaaa-gaccaacattaaatgaggattagaa 163  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||| || |  | ||||||| ||| ||  ||||||||||||||  ||||     
T  3574880 tttttgaatgtttttataaatatactcttataaaaaattgtgaaatattaaatacattcaaattaatattaaaatgataaacattaaatgaggggtagac 3574781  T
Q  164 aagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    || | ||||||||| ||| || |  | |||||||||||  |||||||||||||||    
T  3574780 aaattttttaaacaataactacatttgaaaagttgtgacattttcttataaatag 3574726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 39150187 - 39150324
Alignment:
Q  77 tttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaag-accaacattaaatgaggattagaaaagtcttttaaa 175  Q
    ||||||||||||||| ||||||||| || |||||| |||||||| |  || ||||||| |||  |  |||||||||| |||  ||||||||||||||||     
T  39150187 tttttacaaatataccctcataaaagtt-gtgaagcattaaatacactcattaatattaaaaacaaaaacattaaataaggggtagaaaagtcttttaag 39150285  T
Q  176 cactaaatataccttaaaagttgtgattttttcttataa 214  Q
    || ||| || ||||||||||| ||||| |||||||||||    
T  39150286 caataactacaccttaaaagtagtgatattttcttataa 39150324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 42745740 - 42745544
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| ||||||||||||  | ||||| | |||| | || ||||| ||  ||||||||||||||| || ||| ||  |||||||  ||||||||     
T  42745740 aaaccaaaaaacatcaaaaccaatgctatcattaattgtcgtaactttttaaacatttttacaaatatacccttatagaatgttgtgaaacattaaatac 42745641  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||||||||  |||| | | | ||||||||||  || |||||| ||||||||| ||| ||||| | |||| ||||||  |||||||||||||||    
T  42745640 atccactaatattaaaaaggcaatccttaaatgagggata-aaaagtattttaaacaataattatacttcaaaaattgtgacattttcttataaatag 42745544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 219
Target Start/End: Complemental strand, 11435678 - 11435552
Alignment:
Q  93 ctcataaaaatttgtgaagtattaaatatatccactaatattgaaagaccaa-cattaaatgaggattagaaaagtcttttaaacactaaatatacctta 191  Q
    |||||||||| |||||| | |||||||| ||||||||||||| ||| | ||| |||||||| |    || |||||| ||||||||| ||| |||||||||    
T  11435678 ctcataaaaaattgtgatgcattaaatacatccactaatattaaaaaaacaaacattaaataaatgatataaaagt-ttttaaacaataattatacctta 11435580  T
Q  192 aaagttgtgattttttcttataaatagt 219  Q
     |||||||||  ||||||||||||||||    
T  11435579 taagttgtgacattttcttataaatagt 11435552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 31181047 - 31181199
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaagaccaa--cattaaatgaggattagaaa 164  Q
    ||||||||| ||||||||| ||||| || ||| ||| |||||||  |||||||| |  | |||||||| ||| |  ||  |||||||||| |  || |||    
T  31181047 tttttgaatatttttacaagtatacccttatagaaaattgtgaaacattaaatacactcgctaatattaaaaaaaaaaaacattaaatgaagtgtaaaaa 31181146  T
Q  165 agtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    ||||||||||||| ||| ||||  |||||||||||||  ||||||||||||||    
T  31181147 agtcttttaaacaataactataagttaaaagttgtgacattttcttataaata 31181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 9851809 - 9851960
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaata-ttgaaagaccaacattaaatgaggattagaaaa 165  Q
    ||||||||| |||||||||||||||  | ||||||   ||||||  |||||||||| ||||||||| || |||||  |||||||||| |||  || |||     
T  9851809 tttttgaatatttttacaaatatacctttataaaatactgtgaaacattaaatatacccactaatatttaaaagagaaacattaaat-agggataaaaag 9851907  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||| ||||| || ||| || || |||||||||||||  |||||||||||||||    
T  9851908 gtcatttaagcaataactacactttaaaagttgtgacattttcttataaatag 9851960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 218
Target Start/End: Complemental strand, 46443853 - 46443702
Alignment:
Q  66 ttttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaagaccaacattaaatgaggattagaaaa 165  Q
    |||||||||| ||||||||||||||| | |||||||||| |||||  |||| ||| || |||||| ||| |||    |||  |||||||||  || ||||    
T  46443853 ttttttgaatatttttacaaatatacccacataaaaatt-gtgaaacattatatacattcactaacattaaaaagagaactataaatgagggataaaaaa 46443755  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    || ||||||  | ||| || ||||||||||||||||  |||||||||||||||    
T  46443754 gttttttaagtaataattacaccttaaaagttgtgacgttttcttataaatag 46443702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 17988358 - 17988427
Alignment:
Q  145 cattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataa 214  Q
    |||||||| |||  || |||||||||||||||| ||| || ||||||||||||||||  |||||||||||    
T  17988358 cattaaataaggggtaaaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataa 17988427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 218
Target Start/End: Complemental strand, 28470064 - 28469934
Alignment:
Q  88 atactctcataaaaatttgtgaagtattaaatatatccactaata-ttgaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatata 186  Q
    ||||||||||||||| |||||||  |||||||| | |||| |||| || |||||  |||||||||| |||| |||||||| | |||||  | ||| || |    
T  28470064 atactctcataaaaaattgtgaaacattaaatacacccacaaatatttaaaagagaaacattaaataagga-tagaaaagacatttaagtaataactaca 28469966  T
Q  187 ccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||| ||||||  |||| ||||||||||    
T  28469965 ccttaaaatttgtgacatttttttataaatag 28469934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 31003677 - 31003728
Alignment:
Q  167 tcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||||| ||| || ||||||||||||||||  |||||||||||||||    
T  31003677 tcttttaaacagtaactacaccttaaaagttgtgacattttcttataaatag 31003728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 32800462 - 32800405
Alignment:
Q  67 tttttgaatgtttttacaaatata--ctctcataaaaatttgtgaagtattaaatata 122  Q
    ||||||||||||||||||||| ||  | |||||| ||||||||||| |||||||||||    
T  32800462 tttttgaatgtttttacaaatgtatccactcatagaaatttgtgaaatattaaatata 32800405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 27 - 217
Target Start/End: Original strand, 25376800 - 25376991
Alignment:
Q  27 aaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcca 126  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  ||    
T  25376800 aaaaatcatcaaaaccaagacaatcattagttgttgtaattttttgaatgtttttacaaatataccctcttaaaaatttgtgaagtattaaatatactca 25376899  T
Q  127 ctaatattg-aaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    | ||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||  ||||| |||||||| ||||||    
T  25376900 caaatattgaaaagatcaacattaaatgagggttagaaaagtcttttaaacaataattataccttaaaatctgtgactttttcttgtaaata 25376991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 54864020 - 54863924
Alignment:
Q  123 tccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||||||||||| || ||||||||||||||  ||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||||||||    
T  54864020 tccactaatattgaaaagatcaacattaaatgagagttagaaaagccttttaaacaataaatgtaccttaaaagttgtgactttttcttataaatag 54863924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 18838893 - 18838752
Alignment:
Q  77 tttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaa 175  Q
    ||||||||||||||| |||||||||| |||||||  |||||||| | ||||||||||| ||| ||  | |||||||||||| | ||||||||||||||||    
T  18838893 tttttacaaatataccctcataaaaaattgtgaaacattaaatacacccactaatattaaaaagataatcattaaatgagggt-agaaaagtcttttaaa 18838795  T
Q  176 cactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    || ||| ||||||||||||||| |||  |||||| ||||||||    
T  18838794 caataattataccttaaaagttatgacattttctcataaatag 18838752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 31707303 - 31707480
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| || ||||||||| ||| |||| | ||  || || ||||||||| ||||||||||||||| ||||||||||||| ||||| ||   |||     
T  31707303 aaaccaaaaaacaacaaaaccaatacactcattaattagtgtaactttttgaatatttttacaaatataccctcataaaaatttatgaagcat---atac 31707399  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtga 201  Q
    | |||||||||||  |||||| |||||||||| |||  |||||||||||| ||| || ||| || ||||||||||||||||    
T  31707400 acccactaatattaaaaagacaaacattaaataaggggtagaaaagtcttctaagcaataactacaccttaaaagttgtga 31707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 42312399 - 42312556
Alignment:
Q  69 tttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt--------gaaagaccaacattaaatgaggatta 160  Q
    ||||||| ||||||||||||||| |||||||||| |||||||| || |||||||||| ||||||||         |||||| ||||| |||  | |  ||    
T  42312399 tttgaatatttttacaaatataccctcataaaaaattgtgaagcataaaatatatcctctaatattaaaaaaaaaaaagacaaacataaaacaaaggata 42312498  T
Q  161 gaaaagtcttttaaacactaaatataccttaaaagttgtgatt-ttttcttataaata 217  Q
    |||||||||||||| || ||| ||||||||||||||||||||| |||| |||||||||    
T  42312499 gaaaagtcttttaagcaataactataccttaaaagttgtgattatttttttataaata 42312556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 173
Target Start/End: Complemental strand, 25382541 - 25382395
Alignment:
Q  27 aaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcca 126  Q
    ||||| |||||||| ||||||||| || | || | ||||||||||||||||||| |||||||||| || || |||||||||||||||||||| |||  ||    
T  25382541 aaaaaacatcaaaatcaagacaataattaattatggcaattttttgaatgtttt-acaaatatacccttatgaaaatttgtgaagtattaaaaatactca 25382443  T
Q  127 ctaata-ttgaaagaccaacattaaatgaggattagaaaagtctttta 173  Q
    |||||| |  |||||| |||||||||| |||  || ||||||| ||||    
T  25382442 ctaatactaaaaagactaacattaaataagggctacaaaagtcattta 25382395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 21128171 - 21128097
Alignment:
Q  143 aacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    ||||| |||||||| || ||||||||||||||| | ||||||||| ||||||||| |||  ||||||||||||||    
T  21128171 aacataaaatgagggttggaaaagtcttttaaaaaataaatatacattaaaagttatgacattttcttataaata 21128097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 38216093 - 38216015
Alignment:
Q  119 tatatccactaatattgaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagtt 197  Q
    |||||||||||||| | |||||| |||||||||||| |  ||||||| |||||||  || |||||||||||||||||||    
T  38216093 tatatccactaataataaaagacaaacattaaatgaaggatagaaaaatcttttatgcaataaatataccttaaaagtt 38216015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 122
Target Start/End: Original strand, 34326143 - 34326230
Alignment:
Q  34 atcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatata 122  Q
    ||||||| |||||||||||| |||||||  || ||||| |||||||| |||||||||   |||||||||| |||||| |||||||||||    
T  34326143 atcaaaatcaagacaatcattagttgttctaactttttaaatgtttt-acaaatatatcatcataaaaatatgtgaaatattaaatata 34326230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 32599765 - 32599820
Alignment:
Q  78 ttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatat 133  Q
    ||||| ||||||||  ||||||||| |||||||| |||||||| ||||||||||||    
T  32599765 ttttataaatataccttcataaaaaattgtgaagcattaaatacatccactaatat 32599820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 33721704 - 33721763
Alignment:
Q  159 tagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||||||||||||| ||| || || |||||| ||||||  |||||||||||||||    
T  33721704 tagaaaagtcttttaaacaataactacacattaaaaattgtgacattttcttataaatag 33721763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 16572325 - 16572252
Alignment:
Q  145 cattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||||||  || |||| ||| |||| || ||| || ||||||||||||||||  |||||||||||||||    
T  16572325 cattaaatgagggataaaaaattctgttaagcaataactacaccttaaaagttgtgacattttcttataaatag 16572252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 40413086 - 40413139
Alignment:
Q  97 taaaaatttgtgaagtattaaatatatccactaatattgaaagaccaacattaa 150  Q
    |||||| |||||||  |||||||||||||||||||||| ||| || ||||||||    
T  40413086 taaaaaattgtgaaacattaaatatatccactaatatttaaaaacaaacattaa 40413139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 9425692 - 9425503
Alignment:
Q  20 agaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaatttttt-gaatgtttttacaaatatactctcataaaaatttgtgaagtattaaa 118  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||    
T  9425692 agaaaccaaaaatcatcaaaaccaagaaaatcattagttgttgcaatttttttgaatgtttttacaaatatactctcataaaattctgtgaagtattaaa 9425593  T
Q  119 tatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgatttttt 207  Q
    ||||| ||||| |||  ||| ||  |||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||    
T  9425592 tatattcactattatgaaaaagataaacattaaatgaggattaaaaaagtcttttaaacaataaatatacctcaaaagttgtgatttttt 9425503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 6658077 - 6657887
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaa 118  Q
    ||||||||||||||||||||||||  ||||||||| ||| |||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  6658077 aagaaaccaaaaatcatcaaaaccttgacaatcattagtggttgtaatttttt-aatgtatttacaaatataccctcataaaaatttgtgaagtattaaa 6657979  T
Q  119 tatatccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttctt 210  Q
    |||| |||||||||||  |||||| |||||||||||||| ||||||||||| |||||||| ||||| |||||| |||||||||| ||||||||    
T  6657978 tatacccactaatattaaaaagacaaacattaaatgagggttagaaaagtcatttaaacaataaatgtacctt-aaagttgtgactttttctt 6657887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 19780431 - 19780231
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataa-aaatttgtgaagtattaa 117  Q
    |||||| || |||||||||||||||||| |||||| |||| ||| |||||||| ||||||||||||||||||| | ||| | ||||||||||||||||||    
T  19780431 aagaaatcataaatcatcaaaaccaagataatcattagttattgtaatttttttaatgtttttacaaatatac-cgcattataaatttgtgaagtattaa 19780333  T
Q  118 atatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaat 216  Q
    ||||| |||||||| |||||| ||  |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||  | ||||||||||| ||    
T  19780332 atatacccactaattttgaaaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatat 19780233  T
Q  217 ag 218  Q
    ||    
T  19780232 ag 19780231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 180537 - 180340
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| |||||||||||| ||| |||| | ||  || || ||||||||| | ||||||||||||| || ||||||| || |||||  |||||||     
T  180537 aaaccaaaaaacatcaaaaccaatacactcattaattagtgtaactttttgaatatgtttacaaatatacccttataaaaaattttgaagcgttaaatac 180438  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||| |||||||||  |||||| |||||||||| |||  || ||||||||||||| || ||| || | ||||||| ||||||| |||||||||||||||    
T  180437 atcgactaatattaaaaagacaaacattaaataaggggtataaaagtcttttaagcaataactacatcttaaaaattgtgatattttcttataaatag 180340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 34837146 - 34837278
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt-gaaagaccaacattaaatgaggattagaaaa 165  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||| ||| |||| ||||| |||||||  |||||| | |||||||| |||  || ||||    
T  34837146 tttttgaatatttttacaaatataccctcataaaaaattgtgaagcattcaatacatccattaatattaaaaagacaagcattaaataaggggtaaaaaa 34837245  T
Q  166 gtcttttaaacactaaatataccttaaaagttg 198  Q
    |||||||||||| ||  || |||||||||||||    
T  34837246 gtcttttaaacaatagctacaccttaaaagttg 34837278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 12143670 - 12143770
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    ||||||||||  |||||||||||  ||||||| | ||  || || ||||||||| |||||||||||| || |||||||||| |||||||| |||||||||    
T  12143670 aaaccaaaaaatatcaaaaccaatgcaatcattaattaatgtaactttttgaatatttttacaaatacaccctcataaaaaattgtgaagcattaaatat 12143769  T
Q  122 a 122  Q
    |    
T  12143770 a 12143770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 1856905 - 1856752
Alignment:
Q  64 aattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattaga 162  Q
    |||||||| ||| |||||||||||||||||||||| ||| | || ||  ||||||||  |||| ||||||| ||| ||  || ||||||||||   ||||    
T  1856905 aattttttaaatatttttacaaatatactctcatacaaaat-gtaaaacattaaatacttccattaatattaaaaagagaaatattaaatgagagataga 1856807  T
Q  163 aaagtcttttaaacactaaat-ataccttaaaagttgtgattttttcttataaata 217  Q
    ||||||||||||||| ||| | |||| |||||||||||||| |||| |||||||||    
T  1856806 aaagtcttttaaacaataactgatac-ttaaaagttgtgatatttttttataaata 1856752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 94
Target Start/End: Complemental strand, 5428899 - 5428827
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactct 94  Q
    ||||||||||  ||||||||||   ||||||| | |||||| |||||||| ||| ||||||||||||||||||    
T  5428899 aaaccaaaaaatatcaaaaccattgcaatcattaattgttgtaattttttaaatatttttacaaatatactct 5428827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 217
Target Start/End: Complemental strand, 7926944 - 7926806
Alignment:
Q  80 ttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacac 178  Q
    |||||||||||| |||||||||| |||||||| |||||||| |  |  |||||||  |||||| |  ||||||| |||  || | |||| || |||| |     
T  7926944 ttacaaatataccctcataaaaaattgtgaagcattaaatacactctttaatattaaaaagacaactattaaataaggggtatataagttttctaaaaaa 7926845  T
Q  179 taaatataccttaaaagttgtgattttttcttataaata 217  Q
    ||| || || |||||||||||||| ||||||||||||||    
T  7926844 taattacactttaaaagttgtgatattttcttataaata 7926806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 3611633 - 3611562
Alignment:
Q  146 attaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||||||  ||||||| | ||||||||| ||| |||||||| |||||||| |  |||||||||||||||    
T  3611633 attaaatgagggatagaaaaatattttaaacaataactatacctt-aaagttgtaacattttcttataaatag 3611562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 7011284 - 7011095
Alignment:
Q  27 aaaaatcatcaaaaccaagacaatcatcagttgttgcaatttttt-gaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcc 125  Q
    |||||||||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7011284 aaaaatcatcaaaatcaagacaatcagtagttgttgcaatttttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatataccc 7011185  T
Q  126 actaatattgaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||||||||     | ||||||||||| |||||||||||||||||||| ||||| || ||||||| |||||| ||||||||||||||||    
T  7011184 actaatattgaaa---agatattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaaattgtgactttttcttataaatag 7011095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 14200323 - 14200514
Alignment:
Q  27 aaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcca 126  Q
    ||||||||||||||||||||||||||| |||| |   |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  14200323 aaaaatcatcaaaaccaagacaatcattagttatcctaattttttgaatgtttttacaaatataccctcataaaaatttgtgaagtattaaatatactca 14200422  T
Q  127 ctaatattg-aaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||| ||||| ||||||||||||||| ||| |||||||||||||| | ||||| || ||||||||||||||  |||||||||||||||    
T  14200423 ctaatattgaaaagatcaacattaaatgagggttaaaaaagtcttttaaataataaatgtatcttaaaagttgtga-cttttcttataaatag 14200514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 32872541 - 32872363
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaa 118  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  32872541 aagaaaccaaagatcatcaaaaccaagacaatcattagtggttgtaattttttgaatgtttttacaaatataccctcataaaaaattgtgaagtattaaa 32872442  T
Q  119 tatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagt 196  Q
    |||| ||||||||||| ||| ||| |||||||||| ||| || ||||||||||||||||| ||||| || |||||||||    
T  32872441 tatacccactaatattaaaaggacaaacattaaattagggttggaaaagtcttttaaacaataaatgtaacttaaaagt 32872363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 45723865 - 45724003
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaa 118  Q
    |||||||||||||||||||||||||| |||||||| ||||| |  ||||||||||||||| |||||||||||   |||||||||||| | ||||||||||    
T  45723865 aagaaaccaaaaatcatcaaaaccaaaacaatcattagttgctctaattttttgaatgttgttacaaatatatcttcataaaaatttataaagtattaaa 45723964  T
Q  119 tatatccactaatattg-aaagaccaacattaaatgagg 156  Q
    |||| | |||||||||| ||||||||| |||||||||||    
T  45723965 tatacctactaatattgaaaagaccaatattaaatgagg 45724003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 34309409 - 34309311
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaata 120  Q
    ||||||||||||||||||| |||||||||||| |||  ||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  34309409 aaaccaaaaatcatcaaaatcaagacaatcattagtgattgtaattttttgaatgcttttacaaatataccctcataaaaatttgtgaagtattaaata 34309311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 194
Target Start/End: Complemental strand, 31405098 - 31404969
Alignment:
Q  66 ttttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt-gaaagaccaacattaaatgaggattagaaa 164  Q
    |||||||||| ||||||||||||||  |||||| |||||| ||||||||||||||||| ||||||||||  |||||| || ||||||||||| |||||||    
T  31405098 ttttttgaatatttttacaaatatatcctcatagaaatttatgaagtattaaatatatgcactaatattaaaaagacaaatattaaatgagggttagaaa 31404999  T
Q  165 agtcttttaaacactaaatataccttaaaa 194  Q
    ||||||||||| | ||||| ||||||||||    
T  31404998 agtcttttaaaaaataaatgtaccttaaaa 31404969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 216
Target Start/End: Complemental strand, 38214310 - 38214115
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| |||||||||||| ||||||||   ||   | || ||||||||| ||||||||||||||  |||||||||| |||||||  ||||||||     
T  38214310 aaaccaaaaaacatcaaaaccaatacaatcattgattaaagaaactttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatac 38214211  T
Q  122 atccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaat 216  Q
    |   ||||||||| ||| ||  |  |||||||||||  || |||||||||||||||| |||||| |||||||||||||||| ||||||||||||||    
T  38214210 acatactaatattaaaaagagaagtattaaatgagggatataaaagtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaat 38214115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 39063590 - 39063740
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaa 165  Q
    ||||||||| ||||||||||||||  |||||||||| |||||||  |||||||| |  |||||||||| ||| ||  |  |||||||||| | || ||||    
T  39063590 tttttgaatatttttacaaatataacctcataaaaaattgtgaaacattaaatacacacactaatattaaaaagagaagtattaaatgagcaatataaaa 39063689  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtgattttttcttataaat 216  Q
    |||||||||||| |||||| |||||||||||||||| ||||||||||||||    
T  39063690 gtcttttaaacaataaatacaccttaaaagttgtgaatttttcttataaat 39063740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 16781416 - 16781263
Alignment:
Q  64 aattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattg-aaagaccaacattaaatgaggattaga 162  Q
    ||||||||||||  || ||||||||||| ||||| |||| | |||||  |||||||| | | |||||||||  |||||| |||||||| | |||  ||||    
T  16781416 aattttttgaataattatacaaatataccctcattaaaaatggtgaaacattaaatacacctactaatattacaaagacaaacattaactaaggcgtaga 16781317  T
Q  163 aaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    ||||||||||||||| ||| |||||||| |||||||||| |||||||||||||||    
T  16781316 aaagtcttttaaacattaattatacctt-aaagttgtgactttttcttataaata 16781263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 38496670 - 38496473
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| ||||||||||||  | ||||| | ||  || || ||||||||| ||||||||||||||| || |||||||| || |||  ||||||||     
T  38496670 aaaccaaaaaacatcaaaaccaatgctatcattaattagtgtaactttttgaatatttttacaaatataccctgataaaaatgtgcgaaacattaaatac 38496571  T
Q  122 atccactaatattgaaag-accaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    | | ||||||||| |||  || ||| |||||| |||  |||||| |||||||||||| ||| |||||||||||| || |||  |||||||||||||||    
T  38496570 acctactaatattaaaaatacaaacgttaaataaggggtagaaaggtcttttaaacaataactataccttaaaaattctgacattttcttataaatag 38496473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 40504026 - 40503877
Alignment:
Q  68 ttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaag 166  Q
    |||||||| |||||||| |||||| |||||||||| |||||||| |||||||  | | ||||||||| ||| ||| |||| ||||| |||  || |||||    
T  40504026 ttttgaatatttttacagatataccctcataaaaagttgtgaagcattaaatgcacctactaatattaaaaagacaaacaataaataaggggtataaaag 40503927  T
Q  167 tcttttaaacactaaatataccttaaaagttgtgattttttcttataaat 216  Q
    | ||||||||| ||| || ||||||||||||||||  |||||||||||||    
T  40503926 ttttttaaacaataattacaccttaaaagttgtgacattttcttataaat 40503877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 3268950 - 3268802
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaag-accaacattaaatgaggattagaaaa 165  Q
    ||||||||| ||||||||||||||| || ||||||| ||||||||  ||||||| | | | ||||||| |||  |  |||||||||| |||  |||||||    
T  3268950 tttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaa 3268851  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtgattttttcttataa 214  Q
    ||||||||  || ||| || ||||||||||||||||| |||||||||||    
T  3268850 gtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3268802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 3269509 - 3269361
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaag-accaacattaaatgaggattagaaaa 165  Q
    ||||||||| ||||||||||||||| || ||||||| ||||||||  ||||||| | | | ||||||| |||  |  |||||||||| |||  |||||||    
T  3269509 tttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaa 3269410  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtgattttttcttataa 214  Q
    ||||||||  || ||| || ||||||||||||||||| |||||||||||    
T  3269409 gtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3269361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 214
Target Start/End: Complemental strand, 3270068 - 3269920
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaag-accaacattaaatgaggattagaaaa 165  Q
    ||||||||| ||||||||||||||| || ||||||| ||||||||  ||||||| | | | ||||||| |||  |  |||||||||| |||  |||||||    
T  3270068 tttttgaatatttttacaaatatacccttataaaaagttgtgaagccttaaatacacctattaatattaaaaacaaaaacattaaataaggggtagaaaa 3269969  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtgattttttcttataa 214  Q
    ||||||||  || ||| || ||||||||||||||||| |||||||||||    
T  3269968 gtcttttaggcaataactacaccttaaaagttgtgatattttcttataa 3269920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 40442869 - 40442718
Alignment:
Q  68 ttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaag 166  Q
    |||||||| |||||| | |||||| || ||||||| |||||||| |||||||  | | ||||||||| ||| ||  |||| ||||| |||  || |||||    
T  40442869 ttttgaatatttttatagatatacccttataaaaagttgtgaagcattaaatgcacctactaatattaaaaagataaacaataaataaggggtataaaag 40442770  T
Q  167 tcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    | ||||||||| ||| || ||||||||||||||||  |||||||||||||||    
T  40442769 ttttttaaacaataattacaccttaaaagttgtgacattttcttataaatag 40442718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 40664432 - 40664240
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| |||||||||||| |||||||| | ||   | || ||||||||| || |||||||||||| ||| |||||| |||||||  ||||||||     
T  40664432 aaaccaaaaaacatcaaaaccaatacaatcattaattaaagaaactttttgaatattcttacaaatataccctcgtaaaaaattgtgaaacattaaatac 40664333  T
Q  122 atccactaatatt--gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttat 212  Q
    |  ||| ||| ||   |||||  | ||||||||||||  || |||||||||||||| | |||||| || |||| ||||||||  |||||||||    
T  40664332 acacaccaatgttaaaaaagagaagcattaaatgagggatataaaagtcttttaaataataaatacactttaagagttgtgaaattttcttat 40664240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 35310994 - 35310806
Alignment:
Q  33 catcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcca---cta 129  Q
    |||||||||||||||||| || | ||||| ||| ||||| |||| |||||||||||||| |||||| | || | |  | ||||||||||| | |   |||    
T  35310994 catcaaaaccaagacaataataaattgttacaacttttt-aatgattttacaaatatacactcatagatatctctacattattaaatatacctattacta 35310896  T
Q  130 atattgaaag-accaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtg-attttttcttataaatag 218  Q
    ||||| |||| || |||||||||| |||  || ||||  |||||||||| |||||||| ||||||||| ||| ||||||||||||||||||    
T  35310895 atatttaaaggacaaacattaaataagggctaaaaaac-cttttaaacaataaatatatcttaaaagtagtggattttttcttataaatag 35310806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 13027998 - 13027910
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaag 111  Q
    |||||||||||| ||||||||| | |||| ||   ||||||||| ||||||||| ||||||||||||||  |||||| ||||||||||||    
T  13027998 aaaccaaaaatcgtcaaaaccacg-caattattcattgttgcaactttttgaatatttttacaaatatatcctcatagaaatttgtgaag 13027910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 34262809 - 34262733
Alignment:
Q  119 tatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaa 194  Q
    |||| ||||||||||| ||| ||| |||||||| ||||| |||||||||||||||||||| |||||  |||||||||    
T  34262809 tataaccactaatattaaaaagacaaacattaattgagggttagaaaagtcttttaaacaataaatgaaccttaaaa 34262733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 215
Target Start/End: Original strand, 2287486 - 2287663
Alignment:
Q  38 aaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt-ga 136  Q
    ||||||||||||| || | | |||||||  ||||||||||||||| || |||||| ||||  |||||||| || ||||||||||| | |||||||||  |    
T  2287486 aaaccaagacaataattaatagttgcaacattttgaatgtttttataattatactttcatcgaaatttgtaaaatattaaatata-ctactaatattaaa 2287584  T
Q  137 aagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtga-ttttttcttataaa 215  Q
    || |  || |||||| || | ||| |||||||||||||  | ||||||||  ||||||||||||| ||||||||| ||||    
T  2287585 aaaaaaaatattaaacgaaggtta-aaaagtcttttaacaaataaatatattttaaaagttgtgacttttttcttttaaa 2287663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 218
Target Start/End: Complemental strand, 19286062 - 19285880
Alignment:
Q  37 aaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattg- 135  Q
    |||||||| ||||| || | ||||| ||| ||||| |||  |||||||||||||  |  ||| ||| |||||||  |||||||| || |||||||||||     
T  19286062 aaaaccaatacaattattaattgttacaactttttaaataattttacaaatatatccctatagaaagttgtgaaccattaaatacattcactaatattga 19285963  T
Q  136 aaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||| || ||||||||| |  || ||||||||||||  || ||| || ||||||||| ||||||   || |||||||||||    
T  19285962 aaagacaaatattaaatgaaggatataaaagtcttttatgcaataactacaccttaaaacttgtgacaattacttataaatag 19285880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 4015854 - 4015934
Alignment:
Q  136 aaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    |||||| |||||||| | |||  ||||||||||||||||||| ||| |||| ||| | |||||||| |||||||||||||||    
T  4015854 aaagacaaacattaactaaggggtagaaaagtcttttaaacattaactatatctt-agagttgtgactttttcttataaata 4015934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 21229680 - 21229611
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatac 91  Q
    |||||||||||||| ||||||||  ||||||| | || ||| || ||||||||| |||||||||||||||    
T  21229680 aaaccaaaaatcattaaaaccaatgcaatcattaattattgtaactttttgaatatttttacaaatatac 21229611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 21794907 - 21794858
Alignment:
Q  167 tcttttaaacactaaatataccttaaaagttgtgattttttcttataaat 216  Q
    ||||||||||| | |||| |||||||||||||||| ||||||||||||||    
T  21794907 tcttttaaacaattaatacaccttaaaagttgtgaatttttcttataaat 21794858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Original strand, 2315509 - 2315593
Alignment:
Q  38 aaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatata 122  Q
    ||||||||||||| || | | |||||||  ||||||||||||||| || |||||| ||||  |||||||| || |||||||||||    
T  2315509 aaaccaagacaataattaatagttgcaacattttgaatgtttttataattatactttcatcgaaatttgtaaaatattaaatata 2315593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 3711930 - 3711985
Alignment:
Q  162 aaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||||||||||| ||| ||| |||||||||||||||  |||||||||||||||    
T  3711930 aaaagtcttttaaacaataactat-ccttaaaagttgtgacattttcttataaatag 3711985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 44883267 - 44883310
Alignment:
Q  174 aacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||    
T  44883267 aacaataaatataccttaaaaattgtgatattttcttataaata 44883310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 31365047 - 31365104
Alignment:
Q  77 tttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt 134  Q
    ||||||||||||||| || ||| ||  ||||||| ||||||||| |||||||||||||    
T  31365047 tttttacaaatatacacttatagaatgttgtgaaatattaaatacatccactaatatt 31365104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 21794989 - 21794921
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcat-aaaaatttgtgaagtattaaatatatccactaatatt 134  Q
    ||||||||| ||||||||||||||| ||||| ||||| |||||||  |||||||| |  ||||||||||    
T  21794989 tttttgaatatttttacaaatataccctcataaaaaaattgtgaaacattaaatacacacactaatatt 21794921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 26 - 217
Target Start/End: Original strand, 38209474 - 38209666
Alignment:
Q  26 caaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcc 125  Q
    ||||||||||||||||||||| |||||| | |||||| |||||||| ||| |||||| |||||||| ||  ||||||||||||||||||| |||||| ||    
T  38209474 caaaaatcatcaaaaccaagataatcattacttgttgaaattttttaaatatttttataaatatacccttttaaaaatttgtgaagtatttaatataccc 38209573  T
Q  126 actaatattg-aaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    |||||||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  38209574 actaatattgaaaagaccaacattaaatgagggttagagaagtcttttaaacaataaatgtaccttaaaagttgtgactttttcttataaata 38209666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 36408134 - 36408327
Alignment:
Q  20 agaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaat 119  Q
    |||||||||||||||||||||| |||||||| || ||| |||  |||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |    
T  36408134 agaaaccaaaaatcatcaaaactaagacaattattagtagttataattttttgaatgtttttacaaatataccctcataaaaatttgttaagtattaatt 36408233  T
Q  120 atatccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttata 213  Q
    |||||||||||||||  |||||| ||||||||| |||| ||| |||||| | ||||||| ||||| |||||| |||||||||| |||||||||||    
T  36408234 atatccactaatattaaaaagacaaacattaaacgagggttaaaaaagtttgttaaacaataaatgtacctt-aaagttgtgactttttcttata 36408327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 36054958 - 36054816
Alignment:
Q  77 tttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaa 175  Q
    |||||| |||||||| || || |||| ||| ||||||||||||| ||||||||||||| ||| ||| |||||||| | |||  || ||||||||||||||    
T  36054958 tttttataaatatacccttattaaaaattgggaagtattaaatacatccactaatattaaaaagacaaacattaattaaggggtataaaagtcttttaaa 36054859  T
Q  176 cactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    || |||||||||||||||||||||||  |||||||||||||||    
T  36054858 caataaatataccttaaaagttgtgacattttcttataaatag 36054816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 8251433 - 8251236
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| |||||||||||| ||| |||| | ||  || | |||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||     
T  8251433 aaaccaaaaaacatcaaaaccaatacactcattaattagtgtagttttttgaatatttttacaaatataccctcataaaaaattgtgaagcattaaataa 8251334  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |  ||||||||||  |||||| | |||||||| | |   | ||| ||||||||| || ||| || ||||||||||||||||| |||||||||||||||    
T  8251333 actcactaatattaaaaagacaaccattaaataatggggaaaaaggtcttttaagcaataattacaccttaaaagttgtgatattttcttataaatag 8251236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 31659007 - 31658853
Alignment:
Q  64 aattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattaga 162  Q
    |||||||||||| ||||||||||||||  ||||||||||||  || || |||||||| |||||||| |||| ||| ||| |||||||||| | | ||| |    
T  31659007 aattttttgaatatttttacaaatatatcctcataaaaatta-tgcagcattaaatacatccactagtattaaaaagacaaacattaaataaaggttaaa 31658909  T
Q  163 aaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||||||||| ||| || | ||||||||||||||| |||||||||||||||    
T  31658908 aaagtcttttaaacaataactacatcttaaaagttgtgatattttcttataaatag 31658853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 5924015 - 5923844
Alignment:
Q  26 caaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatata----ctctcataaaaatttgtgaagtattaaatat 121  Q
    ||||||||||||||||||||| |||||| ||| || | |||||||| |||||||||| |||||||    | ||||||||||||||| ||||||||| |||    
T  5924015 caaaaatcatcaaaaccaagataatcattagtggtagtaattttttaaatgtttttaaaaatatatatgccctcataaaaatttgtaaagtattaattat 5923916  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaa 192  Q
    |  ||||||||||  |||||| |||||||||||||| ||||||||    |||||||| ||||| ||||||||    
T  5923915 acacactaatattaaaaagacaaacattaaatgagggttagaaaaaaaatttaaacaataaatgtaccttaa 5923844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 16890264 - 16890419
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattga----aagaccaacattaaatgaggattaga 162  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||  |||||||| |  |||||||||| |    || || |||| ||||| | |  ||||    
T  16890264 tttttgaatatttttacaaatataccctcataaaaaattgtgaaacattaaataaactcactaatatttataaaaaaacaaacaataaataaagggtaga 16890363  T
Q  163 aaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||| ||||||||| |||||||||||||||||||| ||||| |||||||||    
T  16890364 aaagtctttgaaacactaactataccttaaaagttgtgatattttcatataaatag 16890419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 218
Target Start/End: Complemental strand, 1445508 - 1445353
Alignment:
Q  64 aattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatat-tgaaagaccaacattaaatgaggattaga 162  Q
    ||||||||||||  ||||||||||||||  |||| |||| |||||||  |||||||| |  ||||||||| | |||||  |||||||||| |||  ||||    
T  1445508 aattttttgaatacttttacaaatataccttcattaaaaattgtgaaacattaaatacactcactaatatctaaaagagaaacattaaat-agggataga 1445410  T
Q  163 aaagtcttttaaacactaa-atataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||| ||||| || |||  || ||||||||||||||||  |||||||||||||||    
T  1445409 aaagtcatttaagcaataacttacaccttaaaagttgtgacattttcttataaatag 1445353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 2207967 - 2207818
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||| ||||| |||||||||||  ||| |||| | ||  || || ||||||||| ||||||||||||||| |||||||||| |||||||| ||||||||     
T  2207967 aaacaaaaaaacatcaaaaccattacactcattatttagtgtaactttttgaatatttttacaaatataccctcataaaaa-ttgtgaagcattaaatac 2207869  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttt 171  Q
    | ||| |||||||  ||| || |||||||||| |||  ||||||| |||||    
T  2207868 acccattaatattaaaaatacaaacattaaataaggggtagaaaattcttt 2207818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 211
Target Start/End: Complemental strand, 2152473 - 2152328
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa--gaccaacattaaatgaggattagaaa 164  Q
    ||||||||| |||||| |||||||| || ||||||| |||||||| |||||||| |  | |||||||| |||  ||  |||||||||| |||  ||||||    
T  2152473 tttttgaatatttttataaatatacccttataaaaaattgtgaagcattaaatagactcgctaatattaaaaaagataaacattaaataaggggtagaaa 2152374  T
Q  165 agtcttttaaacactaaatataccttaaaagttgtgattttttctta 211  Q
    ||||||||||  | | || | ||||||||| ||||||| ||||||||    
T  2152373 agtcttttaagtaat-aacacaccttaaaaattgtgatattttctta 2152328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 40694291 - 40694232
Alignment:
Q  159 tagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||||||||||| || ||| || |||| |||||||||||| |||||||||||||||    
T  40694291 tagaaaagtcttttaagcaataattacacctaaaaagttgtgatattttcttataaatag 40694232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 30653627 - 30653680
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaata 120  Q
    |||||||||  |||||||||||||| ||||||||||||||||||  ||||||||    
T  30653627 tttttgaataattttacaaatataccctcataaaaatttgtgaaacattaaata 30653680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 30870747 - 30870804
Alignment:
Q  77 tttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt 134  Q
    |||| |||||||||| || ||||||| |||||||  ||||||||||||||||||||||    
T  30870747 ttttgacaaatatacccttataaaaaattgtgaaacattaaatatatccactaatatt 30870804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 43698930 - 43699036
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaa 165  Q
    ||||||||| ||||||| ||||||| ||  || ||||||||||||||||||| | || || ||||||| ||| ||  ||| |||||  ||||||||||||    
T  43698930 tttttgaatttttttacgaatatacact--tagaaatttgtgaagtattaaaaacattcaataatattaaaatgataaacgttaaaccaggattagaaaa 43699027  T
Q  166 gtcttttaa 174  Q
    |||||||||    
T  43699028 gtcttttaa 43699036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 2520129 - 2520182
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaata 120  Q
    ||||||||| ||||||||||||||  |||||||||| |||||||  ||||||||    
T  2520129 tttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaata 2520182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 37993281 - 37993221
Alignment:
Q  73 aatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatat 133  Q
    |||||||||| ||||| |  | |||| |||||||| |||||||||||||||||||| ||||    
T  37993281 aatgtttttataaatacatccacatagaaatttgtaaagtattaaatatatccactcatat 37993221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 30041262 - 30041429
Alignment:
Q  27 aaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcca 126  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||    
T  30041262 aaaaatcatcaaaaccaagacaatcattagtggttgtaattttttgaatgtttttataaatataccctcataaagatttgtgaagtattaaatataacca 30041361  T
Q  127 ctaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaa 193  Q
    ||||||||  |||||| |||||||| | ||| |||||||||||||||||||| |||||||||||||||    
T  30041362 ctaatattaaaaagacaaacattaattaagggttagaaaagtcttttaaacaataaatataccttaaa 30041429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 43105097 - 43105233
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaatttt-ttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaata 120  Q
    |||||||||||||||||||  ||||||||||| | |||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  43105097 aaaccaaaaatcatcaaaattaagacaatcattaattgttgtaatttttttgaatgtttttacaaatataccctcataaaaatttgtgaagtatcaaata 43105196  T
Q  121 tatccactaatattg-aaagaccaacattaaatgagg 156  Q
    || |||||||||||| ||||| |||||||||||||||    
T  43105197 tacccactaatattgaaaagatcaacattaaatgagg 43105233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 35104868 - 35104715
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaa 118  Q
    ||||||| ||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||| ||| ||||| ||| ||| ||||||||    
T  35104868 aagaaacaaaaaatcatcaaa-ccaagacaattattagttgttgcaattttttgaatgtttgtacaaatataccctcttaaaattttttgaggtattaaa 35104770  T
Q  119 tatatccactaatattg-aaagaccaacattaaatgaggattagaaaagtctttt 172  Q
    ||||  ||||||||||| ||||||||||||||||||| | |||||||| ||||||    
T  35104769 tatacacactaatattgaaaagaccaacattaaatgaaggttagaaaaatctttt 35104715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 30577984 - 30577831
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||| |||| ||||||||| ||||| ||| || |||||||| |||||||| |||||||||||||||||||  ||||||||||  ||||||||||||||||    
T  30577984 aaactaaaattcatcaaaatcaagataat-attagttgttgtaattttttaaatgtttttacaaatataccatcataaaaatgagtgaagtattaaatat 30577886  T
Q  122 atccactaatattg-aaagaccaacattaaatgaggattagaaaagtcttttaaa 175  Q
    ||| |||||| ||| |||||||||||||||||||||  |||||| ||||||||||    
T  30577885 atctactaatgttgaaaagaccaacattaaatgagggatagaaacgtcttttaaa 30577831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 24650323 - 24650132
Alignment:
Q  20 agaaaccaaaaatcatcaaaaccaagacaat---catcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtatta 116  Q
    |||||| |||||| |||||||||||||||||   ||| |||||||||||||||||  ||  ||||||||||||||| | ||||||| ||||||| |||||    
T  24650323 agaaacaaaaaattatcaaaaccaagacaatattcattagttgttgcaattttttttatacttttacaaatatacttttataaaaaattgtgaaatatta 24650224  T
Q  117 aatatatccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgatttttt 207  Q
    |||||   ||||||||||  |||||| || |||||| || | ||| |||||| |||| |||| ||||||||||||||||||||| |||||||    
T  24650223 aatatgctcactaatattaaaaagacaaaaattaaaagaaggttaaaaaagtttttttaacaataaatataccttaaaagttgtaatttttt 24650132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 49983910 - 49983793
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgttttt---acaaatatactctcataaaaatttgtgaagtatt 115  Q
    |||||| |||||||||| ||||||||||||||||| |||  ||| ||||||| ||||||||||   |||||||||| |||||||||||||||||||||||    
T  49983910 aagaaatcaaaaatcattaaaaccaagacaatcattagtgattgtaattttt-gaatgttttttttacaaatataccctcataaaaatttgtgaagtatt 49983812  T
Q  116 aaatatatccactaatatt 134  Q
    ||||||| |||||||||||    
T  49983811 aaatatacccactaatatt 49983793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 22923828 - 22923629
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||| |||||||||||||| ||||| | |||| | |||||| || |||||  || |||||||||||||||  |||||||||||||||| |||||||||||    
T  22923828 aaactaaaaatcatcaaaatcaagatagtcattaattgttgtaactttttatatatttttacaaatataccttcataaaaatttgtgatgtattaaatat 22923729  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaata---taccttaaaagttgtgattttttcttataaata 217  Q
    | | |||||||||  ||||| ||  ||||||| | ||||||||| ||| ||||| || ||||||   || |||| ||||||| | |||||||||||||||    
T  22923728 acctactaatattaaaaagatcacaattaaattatgattagaaatgtcctttaaccaataaatatagtatcttacaagttgtaactttttcttataaata 22923629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 49983638 - 49983561
Alignment:
Q  136 aaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttata 213  Q
    |||||| |||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||| |||||||||||    
T  49983638 aaagacaaacattaaatgagggttagaaaagtcttttaaacaataaatgtatcttaaaagttgtgactttttcttata 49983561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 213
Target Start/End: Complemental strand, 41560133 - 41559992
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt-gaaagaccaacattaaatgaggattagaaaa 165  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||||| || |     |||||||||| ||||||| |||||||||||||  ||| ||||    
T  41560133 tttttgaatgtttttataaatataccttcataaaaatttgtgaagtat-aact-----cactaatattagaaagacaaacattaaatgagagttaaaaaa 41560040  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtgattttttcttata 213  Q
    ||||||||||   ||||| || ||||||| || |||||||||||||||    
T  41560039 gtcttttaaatcataaatgtatcttaaaaattatgattttttcttata 41559992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 147 - 217
Target Start/End: Original strand, 43105935 - 43106004
Alignment:
Q  147 ttaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    |||||||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  43105935 ttaaatgagggttagaaaagtcttttaaacaataaata-accttaaaagttgtgactttttcttataaata 43106004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 35455456 - 35455309
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaagaccaacattaaatgaggattagaaaag 166  Q
    ||||||||| ||| |||||||||||||  ||||||| |||||||  |||||||| |  |||||||||| ||| |  ||||||||||  |||| |||||||    
T  35455456 tttttgaatatttctacaaatatactc--ataaaaaattgtgaaacattaaatacactcactaatatttaaatataaacattaaatagggat-agaaaag 35455360  T
Q  167 tcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    || ||||| || ||| || ||||||||||||||||  ||||||||||||||    
T  35455359 tcatttaagcaataattacaccttaaaagttgtgacattttcttataaata 35455309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 40344888 - 40345078
Alignment:
Q  27 aaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcca 126  Q
    ||||| ||||||||||||  || ||||   || |||||| ||||||||| ||||||||||||||| || ||||||| |||||||  |||||  |||  ||    
T  40344888 aaaaaacatcaaaaccaatgcagtcattgattattgcaactttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaa--atactca 40344985  T
Q  127 ctaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||  |||||| || |||||||||||  || |||||||| |||| || | | || ||||||||||||||||  |||||||||| ||||    
T  40344986 ctaatattaaaaagacaaatattaaatgaggggtataaaagtctcttaagcaatgactacaccttaaaagttgtgacattttcttatagatag 40345078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 43320133 - 43320279
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaagaccaacattaaatgaggattagaaaag 166  Q
    ||||||||| |||||||||||| || || ||||||| | | |||| |||||||| || ||||||     |||||| |||||| |||  ||  ||||||||    
T  43320133 tttttgaatatttttacaaatacacccttataaaaaatcgcgaagcattaaatacattcactaa-----aaagacaaacattgaataggggctagaaaag 43320227  T
Q  167 tcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||||| |||  | ||||||||||||||||  |||||||||||||||    
T  43320228 tcttttaaacaataaccacaccttaaaagttgtgacattttcttataaatag 43320279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 32211842 - 32211936
Alignment:
Q  124 ccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    ||||||||||| ||| ||| |||||||||| | |  ||||||||||||||||||| ||| || ||||||||||||||||  ||||||||||||||    
T  32211842 ccactaatattaaaaagacaaacattaaataacgggtagaaaagtcttttaaacaataactacaccttaaaagttgtgaaattttcttataaata 32211936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 45261558 - 45261364
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| ||||||||||||  || ||||   ||  || || ||||||||  ||||||||||||||| |||| ||||  |||||||  ||||||||     
T  45261558 aaaccaaaaaacatcaaaaccaatgcattcattgattaatgtaactttttgaacatttttacaaatataccctcaaaaaa--ttgtgaaacattaaatac 45261461  T
Q  122 atccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    | ||||||||||| ||| ||  ||||||||||  |||| ||||||||| ||||| || ||| || | ||||||||||||||  |||||||||||||||    
T  45261460 acccactaatatttaaaagagaaacattaaatagggat-agaaaagtcatttaagcaataactacagcttaaaagttgtgacattttcttataaatag 45261364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 17003573 - 17003724
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaata-ttgaaagaccaacattaaatgaggattagaaaa 165  Q
    ||||||||| ||||||||||||||| |||||||||| |||||||  |||||| | | ||||||||| || |||||  |||||||||| |||  || ||||    
T  17003573 tttttgaatatttttacaaatataccctcataaaaa-ttgtgaaacattaaacacacccactaatatttaaaagagaaacattaaat-agggataaaaaa 17003670  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtga-ttttttcttataaatag 218  Q
    ||| ||||| || ||| || ||||||||||||||||  ||||| ||||||||||    
T  17003671 gtcatttaagcaataactacaccttaaaagttgtgacattttttttataaatag 17003724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 42279182 - 42279287
Alignment:
Q  17 agaagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtatta 116  Q
    |||| ||| ||||||||||||||| |||||   |||| | |||| | || ||||| ||| ||||||||||||||| ||||||||||||| |||| |||||    
T  42279182 agaaaaaatcaaaaatcatcaaaatcaagatcgtcattaattgtggtaacttttttaatatttttacaaatataccctcataaaaatttatgaaatatta 42279281  T
Q  117 aatata 122  Q
    ||||||    
T  42279282 aatata 42279287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 94 - 218
Target Start/End: Complemental strand, 38854739 - 38854614
Alignment:
Q  94 tcataaaaatttgtgaagtattaaatatatccactaatattgaaaga--ccaacattaaatgaggattagaaaagtcttttaaacactaaatatacctta 191  Q
    |||||||||||||||||||||| ||| ||  || | ||||| ||| |  | || |||||| |||| | ||||||||||| |||| | ||||||||| |||    
T  38854739 tcataaaaatttgtgaagtattgaatttactcattgatattaaaaaaaacaaaaattaaacgagggtgagaaaagtcttctaaaaa-taaatatacttta 38854641  T
Q  192 aaagttgtgattttttcttataaatag 218  Q
    |||||||||| ||||||||||||||||    
T  38854640 aaagttgtgaatttttcttataaatag 38854614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 8825355 - 8825505
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaagaccaacattaaatgaggattagaaaag 166  Q
    ||||| ||| |||||| |||||||| || ||||||| ||||| || |||||||| |  || ||||||| ||| |    |||||||||| |  ||||||||    
T  8825355 tttttaaatatttttataaatatacccttataaaaaattgtgtagcattaaatacactcattaatattaaaataaagtcattaaatgaaggatagaaaag 8825454  T
Q  167 tcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||| || ||| || ||||||||| ||||||  |||||||||||||||    
T  8825455 tcttttaagcaataactacaccttaaaa-ttgtgacattttcttataaatag 8825505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 25295127 - 25295198
Alignment:
Q  145 cattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaat 216  Q
    ||||||||||||  || |||||||||||||||| ||| || |||||||||||||| |  |||||||||||||    
T  25295127 cattaaatgagggataaaaaagtcttttaaacaataattacaccttaaaagttgtaacattttcttataaat 25295198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 27828599 - 27828544
Alignment:
Q  66 ttttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| |||||||||||||||  ||||||||||||||||| || |||||||    
T  27828599 ttttttgaatatttttacaaatataccttcataaaaatttgtgaaatactaaatat 27828544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 46918418 - 46918610
Alignment:
Q  26 caaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcc 125  Q
    |||||| ||||||||||||  | | ||| | |||||| || ||||| ||  ||||||||||||||| || ||| ||  || ||||  |||||||| || |    
T  46918418 caaaaaacatcaaaaccaatgccaacattaattgttgtaaatttttaaacatttttacaaatatacccttatagaatattttgaaacattaaatacattc 46918517  T
Q  126 actaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    | ||||||| ||| |||  ||||||||||| |  || ||||||||||||| || ||| ||| |||||||| ||||||  |||||||||||||||    
T  46918518 attaatattaaaaagacagacattaaatgaaggataaaaaagtcttttaagcaataactat-ccttaaaaattgtgacattttcttataaatag 46918610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 49787886 - 49787770
Alignment:
Q  77 tttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaa 175  Q
    |||| ||||||| || |||||  |||||||| || |||||||||||  || |||| || ||| ||| ||||||||| |||| ||| |||||| |||||||    
T  49787886 ttttgacaaatacaccctcattgaaatttgtaaaatattaaatatactcattaattttaaaaggacaaacattaaacgagggttataaaagtattttaaa 49787787  T
Q  176 cactaaatataccttaa 192  Q
    || |||||||| |||||    
T  49787786 caataaatatatcttaa 49787770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 52596618 - 52596686
Alignment:
Q  63 caattttttgaatgtttttacaaatatactctcat-aaaaatttgtgaagtattaaatatatccactaa 130  Q
    ||||||||||||| ||||||| |||||||  |||| ||||| ||||||||||||  |||||||||||||    
T  52596618 caattttttgaatatttttacgaatataccatcataaaaaaattgtgaagtatttgatatatccactaa 52596686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 25294809 - 25294897
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaa 110  Q
    |||||||||| |||||| ||||| |||||||| | ||  || || | ||| ||| |||||| ||| ||||||||||||||| |||||||    
T  25294809 aaaccaaaaaacatcaataccaatacaatcattaattaatgaaactatttaaatatttttataaacatactctcataaaaaattgtgaa 25294897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 50452386 - 50452438
Alignment:
Q  165 agtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    ||||||||||||| ||  |||||||||||| || |||| ||||||||||||||    
T  50452386 agtcttttaaacaatagttataccttaaaaattatgatattttcttataaata 50452438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 38781 - 38979
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaa 118  Q
    |||||||||||||| ||||  ||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  38781 aagaaaccaaaaattatcacgaccaaaacaatcattagttcttgcaattttttgaatgtttttacaaatatactctcataaaaatttgggaactattaaa 38880  T
Q  119 tatatccactaatattgaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
     ||||||||||||||||| | | | ||||| ||| |||  ||||||| | ||||||||| |||||||| ||||||| |||||| |||||||||||||||    
T  38881 catatccactaatattgataaaacgacattcaataagggctagaaaaatattttaaacaataaatatatcttaaaaattgtgactttttcttataaata 38979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 10599706 - 10599898
Alignment:
Q  27 aaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcca 126  Q
    |||||||||||||||||||||| | || |||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||  ||    
T  10599706 aaaaatcatcaaaaccaagacattgattagttgttgcaatgttttgaatgattttacaaatataccctcataaaattttgtgaagtattaaatatacaca 10599805  T
Q  127 ctaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||| ||||  |||||  |||||||||||| | |||||||||| ||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||    
T  10599806 ctattattaaaaagataaacattaaatgaaggttagaaaagtttttcaaacaataaatgtacctcaaaagttgtgactttttcttataaatag 10599898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 14568557 - 14568357
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaa 118  Q
    |||||| || ||||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||  |  || |||||| ||||||||| ||    
T  14568557 aagaaatcataaatcatcaaaaccaagacaatcattagttattgtaatattttgaatgtttttacaaatataccgtattataaatttttgaagtattcaa 14568458  T
Q  119 tatatccactaatattg-aaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    |||| |||||||| ||| |||||  |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||  | ||||||||||| |||    
T  14568457 tatacccactaattttgaaaagagaaacattaaatgagggttagaaaagtcttttaaacaataaatatatcttaaaagttgaaactttttcttatatata 14568358  T
Q  218 g 218  Q
    |    
T  14568357 g 14568357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 67 - 213
Target Start/End: Complemental strand, 41508252 - 41508105
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt-gaaagaccaacattaaatgaggattagaaaa 165  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| |||||||| | |||||||||||  |||||| |||||||||| |||  || ||||    
T  41508252 tttttgaatgtttttacaaatataccctcataaaaaattgtgaagcattaaatacacccactaatattaaaaagacaaacattaaataaggggtaaaaaa 41508153  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtgattttttcttata 213  Q
    ||||||||| || ||| || ||||||||| ||||||| ||||||||||    
T  41508152 gtcttttaagcaataactacaccttaaaaattgtgatattttcttata 41508105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 10409895 - 10409790
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaatttttt--gaatgtttttacaaatatactctcataaaaatttgtgaagtatta 116  Q
    ||||||| |||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||| |||||||| ||| ||||||||||||||||||||    
T  10409895 aagaaacaaaaaatcatcaaaaccaaaacaatcattagttgttgcaattttttttgaatgtttttataaatataccctcttaaaaatttgtgaagtatta 10409796  T
Q  117 aatata 122  Q
    ||||||    
T  10409795 aatata 10409790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 14658727 - 14658921
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    ||||||||||  ||||||||| | | |||||| |||| || ||| ||||| ||||||||||||||||||| ||||||||||  | |||||||||||||||    
T  14658727 aaaccaaaaa--atcaaaacctataaaatcattagttattacaactttttaaatgtttttacaaatataccctcataaaaacatatgaagtattaaatat 14658824  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtga-ttttttcttataaata 217  Q
     ||||||| ||||  |||||  ||||||||| |||||||  |||||||||||| | | |||||| ||||||||| || ||| ||||||||||||||||    
T  14658825 ttccactagtattaaaaagataaacattaaacgaggattgaaaaagtcttttacatagtaaatacaccttaaaa-ttatgacttttttcttataaata 14658921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 218
Target Start/End: Complemental strand, 42935552 - 42935454
Alignment:
Q  121 tatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||| ||||| || || ||||||||||| ||||||||||||||||    
T  42935552 tatccactaatactgaaaagaccaacattaaatgagaattagaaaaatcttttaaacaataaatgtatctcaaaagttgtgactttttcttataaatag 42935454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 217
Target Start/End: Complemental strand, 7307592 - 7307441
Alignment:
Q  68 ttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt-gaaagaccaacattaaatgaggatta-gaaaa 165  Q
    ||||| || |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||  ||| || ||| |||||| |||   |  ||||    
T  7307592 ttttgcatatttttacaaatatactctcataaaaaattgtgaagcattaaatacatccactaatattaaaaaaacaaaccttaaataaggggcataaaaa 7307493  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
     ||||||||||| ||| ||  | |||||||||||||  ||||||||||||||    
T  7307492 atcttttaaacaataactactctttaaaagttgtgacattttcttataaata 7307441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 15033262 - 15033410
Alignment:
Q  26 caaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcc 125  Q
    ||||||||||||||| |||||||||||  | ||||  |   |||||||||| ||||||||||||||||| |||||||||| |||| |||| ||||||  |    
T  15033262 caaaaatcatcaaaatcaagacaatcactaattgtacc---tttttgaatgattttacaaatatactctaataaaaatttatgaattattgaatatactc 15033358  T
Q  126 actaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaaca 177  Q
    ||||||||||||| ||| || |||||| |||   || ||||||||||||||||    
T  15033359 actaatattgaaaagacaaatattaaacgagagcta-aaaagtcttttaaaca 15033410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 17757336 - 17757448
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||||||| |||| ||||||  |||| | |||| | || ||||| ||||||||||||||||||   ||||||||| ||||||| |||| |||||    
T  17757336 aaaccaaaaatcataaaaatcaagaccgtcattaattgtcgtaacttttttaatgtttttacaaatatatcttcataaaaaattgtgaattattgaatat 17757435  T
Q  122 atccactaatatt 134  Q
    | |||||||||||    
T  17757436 acccactaatatt 17757448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 2195879 - 2195805
Alignment:
Q  144 acattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||||| || ||||||||||||||||||| ||| || |||||||||||| |||| |||||||||| ||||    
T  2195879 acattaaatgaagagtagaaaagtcttttaaacaataactacaccttaaaagttatgatattttcttatatatag 2195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 17757477 - 17757558
Alignment:
Q  136 aaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
    |||||||| |||||||| ||| ||| ||| ||||||||| || ||||| ||||||||||||||||  |||||||||||||||    
T  17757477 aaagaccaccattaaattagggttaaaaatgtcttttaagcaataaatgtaccttaaaagttgtgtctttttcttataaata 17757558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 42935911 - 42935834
Alignment:
Q  37 aaaaccaagacaatcatcagttgttgcaattttttga-atgtttttacaaatatactctcataaaaatttgtgaagta 113  Q
    |||| |||||||||||| |||||||||||||||||   |||||||||||||||||| ||| |||||| ||||||||||    
T  42935911 aaaatcaagacaatcattagttgttgcaattttttttcatgtttttacaaatataccctcttaaaaacttgtgaagta 42935834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 14650104 - 14650247
Alignment:
Q  73 aatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgagga-ttagaaaagtctt 170  Q
    ||||||||||||||||||| ||| ||||| ||| ||||||    ||||||||||||| |||| ||| ||  |||||| |||||||| | | |||||||||    
T  14650104 aatgtttttacaaatataccctcgtaaaattttatgaagt----aatatatccactagtattaaaatgataaacattgaatgaggactaaaaaaagtctt 14650199  T
Q  171 ttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||  || |||||| | ||||||| ||||||  |||||||||||||||    
T  14650200 ttatgcaataaatacatcttaaaaattgtgacattttcttataaatag 14650247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 13777786 - 13777737
Alignment:
Q  73 aatgtttttacaaatatactctcataaaaatttgtgaagtattaaatata 122  Q
    |||||||||| ||||||||  |||||||||||||||||||||||||||||    
T  13777786 aatgtttttataaatatacgttcataaaaatttgtgaagtattaaatata 13777737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 217
Target Start/End: Complemental strand, 37048735 - 37048576
Alignment:
Q  64 aattttttgaatgtttttacaaatatact---ctcataaaaatttgtgaagtattaaatatatccactaatattg----aaagaccaacattaaatgagg 156  Q
    |||||||||||||||| ||||||||||     |||||||||||| |||||  |||||||||  ||||||||| |     |||||  |||||||||| | |    
T  37048735 aattttttgaatgtttatacaaatatatgtacctcataaaaattcgtgaaccattaaatatc-ccactaatagtattaaaaagataaacattaaataaag 37048637  T
Q  157 attagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaata 217  Q
      ||||||||||||||||||| | | || || |||||||||||||| ||||||||||||||    
T  37048636 ggtagaaaagtcttttaaacaatcactacactttaaaagttgtgatattttcttataaata 37048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 45072511 - 45072567
Alignment:
Q  64 aattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaata 120  Q
    |||||||||||| |||||| |||||||||||||||||||  ||||||| ||||||||    
T  45072511 aattttttgaatatttttataaatatactctcataaaaaactgtgaagcattaaata 45072567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 46101245 - 46101359
Alignment:
Q  104 ttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgat 202  Q
    ||||||| |||||| || ||||||||||||| ||| ||| | ||||||||||||  |||||||||||||| |  | ||| || | |||||||||| |||     
T  46101245 ttgtgaaatattaagtacatccactaatattaaaatgacaatcattaaatgaggggtagaaaagtcttttgagtaataactacaacttaaaagttatgac 46101344  T
Q  203 tttttcttataaata 217  Q
     ||||||||||||||    
T  46101345 attttcttataaata 46101359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 12506782 - 12506713
Alignment:
Q  144 acattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttata 213  Q
    ||||||||| |||  |||||||||||||| |||| ||| || |||||||||||||| || ||||||||||    
T  12506782 acattaaataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttcttata 12506713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 218
Target Start/End: Complemental strand, 20949224 - 20949073
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt-gaaagaccaacattaaatgaggattagaaaa 165  Q
    ||||| ||| ||||||||||||||| |||||||||| |||||||  |||||||| |   |||||||||  |||||   ||||||||| |||  || ||||    
T  20949224 tttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaatacacatactaatattcaaaagagagacattaaat-agggataaaaaa 20949126  T
Q  166 gtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
     || ||||| || ||| || |||||||||||| |||  |||||||||||||||    
T  20949125 atcatttaagcaataactacaccttaaaagttatgacattttcttataaatag 20949073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 15968546 - 15968471
Alignment:
Q  27 aaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaa 102  Q
    ||||| ||||||||  ||||| || || | ||||||||| ||||||||||||||||||| || ||| |||||||||    
T  15968546 aaaaaacatcaaaattaagacgattattaattgttgcaactttttgaatgtttttacaattacactttcataaaaa 15968471  T

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Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 46341556 - 46341502
Alignment:
Q  159 tagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttata 213  Q
    |||| ||||||||||| || ||| || ||||||||||||||||| ||||||||||    
T  46341556 tagagaagtcttttaagcaataactacaccttaaaagttgtgatattttcttata 46341502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 12485350 - 12485281
Alignment:
Q  144 acattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttata 213  Q
    ||||||||| |||  |||||||||||||| |||| ||| || |||||||||||||| || |||| |||||    
T  12485350 acattaaataagggatagaaaagtcttttgaacaataactacaccttaaaagttgtaatattttattata 12485281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 18145916 - 18145799
Alignment:
Q  78 ttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaac 176  Q
    |||||||||||||| |  ||| ||| |||| || ||||||||| ||||||||||||| ||| ||  | ||||||||||  | ||||||| ||||||||||    
T  18145916 ttttacaaatatacccgtatagaaagttgtaaaatattaaatacatccactaatattaaaatgataatcattaaatgaaaagtagaaaaatcttttaaac 18145817  T
Q  177 actaaatataccttaaaa 194  Q
    | ||| || || ||||||    
T  18145816 aataattacactttaaaa 18145799  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 20022046 - 20022114
Alignment:
Q  34 atcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaa 102  Q
    |||||||| ||||||||||| |  ||||| || ||||| |||| |||||||||||| || |||||||||    
T  20022046 atcaaaactaagacaatcattaactgttgtaactttttaaatgcttttacaaatattctatcataaaaa 20022114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 173
Target Start/End: Complemental strand, 35333405 - 35333328
Alignment:
Q  94 tcataaaaatttgtgaagtattaaatatatccactaatattgaaagaccaacattaaatgaggattagaaaagtctttta 173  Q
    |||||||||||| | ||||||||||||||| || || ||   |||||| |||||||||||||| ||| |||| |||||||    
T  35333405 tcataaaaatttataaagtattaaatatattcaatattaa--aaagacaaacattaaatgagggttaaaaaaatctttta 35333328  T

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Target: scaffold0006 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 131929 - 131735
Alignment:
Q  19 aagaaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgttttt-acaaatatactctcataaaaatttgtgaagt---at 114  Q
    |||||| |||||||||||||||| ||||||||||| |||  ||| ||||||| |||||||||| |||||||||| ||||||||||||||||||||   ||    
T  131929 aagaaagcaaaaatcatcaaaacgaagacaatcattagtaattgtaattttt-gaatgttttttacaaatataccctcataaaaatttgtgaagtattat 131831  T
Q  115 taaatatatccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttctt 210  Q
    |||||||| |||||||||||  |||||| ||| || | ||| | ||||||||||||||| |||| |||||  ||||| |||||||||| ||||||||    
T  131830 taaatataaccactaatattaaaaagacaaacttttattgaaggttagaaaagtcttttgaacaataaatgcacctt-aaagttgtgactttttctt 131735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1809 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 452 - 641
Alignment:
Q  26 caaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatcc 125  Q
    |||||| |||||| ||||| || ||||| | |||||| || ||||| ||  ||||||||||||||| || ||| ||  |||||||  |||||||  ||||    
T  452 caaaaaacatcaataccaataccatcattaattgttgtaactttttaaagatttttacaaatatacccttatagaatgttgtgaaacattaaatggatcc 551  T
Q  126 actaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataa 214  Q
    ||||||||| ||| ||| | ||||||||||||  || |||||||||||||||| ||| || |||||||| ||||||| ||||||||||||    
T  552 actaatattaaaacgacaatcattaaatgagggataaaaaagtcttttaaacaataactacaccttaaatgttgtgactttttcttataa 641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 17686427 - 17686233
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    ||||||||||  ||||||||| | | |||||| |||| || |||  |||| ||||||||||||| |||||  |||||||||  | ||||||||||||| |    
T  17686427 aaaccaaaaa--atcaaaacctataaaatcattagttattacaacgttttaaatgtttttacaagtataccttcataaaaacatatgaagtattaaatgt 17686330  T
Q  122 atccactaatattgaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtga-ttttttcttataaata 217  Q
     ||||||| |||| |||    ||||||||| |||||||  |||||||||||| | | |||||| |||||||||||| ||| ||||||||||||||||    
T  17686329 ttccactagtattaaaaagataacattaaaggaggattgaaaaagtcttttatatagtaaatacaccttaaaagttatgacttttttcttataaata 17686233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 198
Target Start/End: Original strand, 11983578 - 11983709
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaa 165  Q
    |||||||||  |||||||||||||||||  |||||||| |||||  |||||||| ||||||||||||| ||| ||  ||||||||||||||  || ||||    
T  11983578 tttttgaatacttttacaaatatactcttgtaaaaatt-gtgaaacattaaatacatccactaatattaaaaagagaaacattaaatgaggggtaaaaaa 11983676  T
Q  166 gtcttttaaacactaaatataccttaaaagttg 198  Q
     ||||||||||| ||| || |||||||||||||    
T  11983677 atcttttaaacaataattacaccttaaaagttg 11983709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 3257251 - 3257354
Alignment:
Q  113 attaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttctta 211  Q
    |||||||||||||||||||||| ||| ||| |||||||||| ||   ||||||||||||||||||| ||  ||  |||||||||||||||| ||||||||    
T  3257251 attaaatatatccactaatattaaaaagacaaacattaaataagagatagaaaagtcttttaaacaatagttacgccttaaaagttgtgatattttctta 3257350  T
Q  212 taaa 215  Q
    ||||    
T  3257351 taaa 3257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 6688928 - 6688792
Alignment:
Q  80 ttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatat-tgaaagaccaacat--taaatgaggattagaaaagtcttttaaac 176  Q
    |||||||||||| |||||||||| |||| ||| |||||||| |   |||||||| | ||| || |||||  ||||| |||  ||||||||||||||||||    
T  6688928 ttacaaatataccctcataaaaaattgtaaagcattaaatacacttactaatatattaaaaacaaacatattaaataagggatagaaaagtcttttaaac 6688829  T
Q  177 actaaatataccttaaaagttgtgattttttcttata 213  Q
    | ||| || ||||||||||||||||| ||||||||||    
T  6688828 aataactacaccttaaaagttgtgatattttcttata 6688792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 214
Target Start/End: Complemental strand, 18705196 - 18705003
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| |||| ||||||| ||||  || | ||  || || ||||||||| ||||||||||||||  || ||||||| |||||||| ||||||||     
T  18705196 aaaccaaaaaacatcgaaaccaatacaactattaattagtgtaactttttgaatatttttacaaatatatccttataaaaagttgtgaagcattaaatac 18705097  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataa 214  Q
    | | | |||||||  ||| |  |||||||||| | |  || |||||||||||||  | ||| || |||||||||||| |||| |||||||||||    
T  18705096 acctattaatattaaaaacaaaaacattaaataaagggtaaaaaagtcttttaagtaataactacaccttaaaagttatgatgttttcttataa 18705003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 2225777 - 2225586
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| ||||||||| || ||||| || | ||  || || ||||  ||| |||||||||||||||  ||||||||| |||||||  ||||||||     
T  2225777 aaaccaaaaaacatcaaaactaatacaattattaattagtgtaacttttgaaatatttttacaaatataccttcataaaaagttgtgaaacattaaatac 2225678  T
Q  122 atccactaatatt-gaaagaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttat 212  Q
    | |||||||||||  ||| |  |||||||||| |    ||||||||||||||||||| | |    |||||||| |||||||| |||||||||    
T  2225677 aaccactaatattaaaaacaaaaacattaaataaatggtagaaaagtcttttaaacaatcatgtcaccttaaatgttgtgatgttttcttat 2225586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 218
Target Start/End: Complemental strand, 17693705 - 17693562
Alignment:
Q  73 aatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattaga-aaagtctt 170  Q
    ||||||||||||||||||| ||| ||||| ||| ||||||    ||||||||||||| |||| ||| ||  |||||| |||||||| || | ||||||||    
T  17693705 aatgtttttacaaatataccctcgtaaaattttatgaagt----aatatatccactagtattaaaatgataaacattgaatgaggactaaagaaagtctt 17693610  T
Q  171 ttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||   | |||||| | ||||||| ||||||  |||||||||||||||    
T  17693609 ttatgtaataaatacatcttaaaaattgtgacattttcttataaatag 17693562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 19296165 - 19296288
Alignment:
Q  77 tttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaa 175  Q
    |||||||| |||||| |||||||||||| || || ||||||| | |||| |||||||| ||| ||  ||||||||||  |||| |||||||||||||||     
T  19296165 tttttacatatataccctcataaaaatt-gtaaaatattaaacacatccgctaatattaaaatgagaaacattaaatatggat-agaaaagtcttttaag 19296262  T
Q  176 cactaaatataccttaaaagttgtga 201  Q
    || ||| || || |||||||||||||    
T  19296263 caataactacactttaaaagttgtga 19296288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 27193084 - 27193011
Alignment:
Q  145 cattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||||| |  || |||||||||||||||| ||| |||| ||||||||||||||  ||| |||||||||||    
T  27193084 cattaaatgaaggataaaaaagtcttttaaacaataactatatcttaaaagttgtgacatttccttataaatag 27193011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 33432787 - 33432873
Alignment:
Q  27 aaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtat 114  Q
    ||||| |||||||| |||||||||||| | |||||| |||||||| ||| || |||| |||||||  ||||| |||||||||| ||||    
T  33432787 aaaaaacatcaaaatcaagacaatcattaattgttgtaatttttt-aatattcttacgaatataccttcatagaaatttgtgatgtat 33432873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 39569202 - 39569147
Alignment:
Q  67 tttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatata 122  Q
    |||||||||||||||||||||||| |  ||||||||||||| || |||| ||||||    
T  39569202 tttttgaatgtttttacaaatatatttacataaaaatttgtcaaatatttaatata 39569147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 14418009 - 14417941
Alignment:
Q  66 ttttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatatt 134  Q
    |||||| ||| || |||||||| |||  ||||||||| |||||||| |||||||| | |||||||||||    
T  14418009 tttttttaatattcttacaaatttaccttcataaaaaattgtgaagcattaaatacacccactaatatt 14417941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 19090208 - 19090303
Alignment:
Q  37 aaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatat 133  Q
    |||| |||||| ||||| | |||||| |||||||| ||| |||||| |||||||  |||| | ||||||||||| | || |||||||||| ||||||    
T  19090208 aaaatcaagacgatcattaattgttgtaatttttttaatatttttataaatatatcctcaaagaaatttgtgaaat-tttaatatatccattaatat 19090303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 154537 - 154340
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||| ||||| |||||||||||| ||| |||| | ||  || || || |||||| |||||||||| || | ||||||||||  ||||||| ||||||||     
T  154537 aaacaaaaaaacatcaaaaccaatacactcattaattagtgtaacttgttgaatatttttacaaacatgccctcataaaaaactgtgaagcattaaatac 154438  T
Q  122 atccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    | |||| |||||| ||| ||| |||||||||| |    || ||| |||||||||||| ||| || |||||||||||||| || |||||||||||||||    
T  154437 acccaccaatattaaaaagacaaacattaaataaaaggtaaaaaggtcttttaaacaataactacaccttaaaagttgtaatattttcttataaatag 154340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 218
Target Start/End: Complemental strand, 3219 - 3022
Alignment:
Q  22 aaaccaaaaatcatcaaaaccaagacaatcatcagttgttgcaattttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatat 121  Q
    |||||||||| |||||||||||| ||  |||| | || ||| |  ||||| ||  |||||||||| || | || ||| ||  |||||||  ||||||||     
T  3219 aaaccaaaaaacatcaaaaccaatactgtcattaattcttgtacctttttaaacatttttacaaacatgcccttatagaatgttgtgaaacattaaatac 3120  T
Q  122 atccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    ||||||||||||| ||| ||  |  ||| |||||||  ||||||||||||||||||| ||| || ||||||||||||||||  |||||||||||||||    
T  3119 atccactaatattaaaaagagaattattgaatgagggatagaaaagtcttttaaacaataactacaccttaaaagttgtgacattttcttataaatag 3022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 218
Target Start/End: Complemental strand, 51424 - 51273
Alignment:
Q  68 ttttgaatgtttttacaaatatactctcataaaaatttgtgaagtattaaatatatccactaatattgaaa-gaccaacattaaatgaggattagaaaag 166  Q
    |||||||| ||||||||| ||||| |||||||||| |||||||  |||||||| | | ||||| ||| ||| ||  |  |||||||||||  || ||||     
T  51424 ttttgaatatttttacaattataccctcataaaaagttgtgaaacattaaatacaccaactaaaattaaaaagagaattattaaatgagggataaaaaaa 51325  T
Q  167 tcttttaaacactaaatataccttaaaagttgtgattttttcttataaatag 218  Q
    |||||||| || |||||| ||||||||||||||||  ||| |||||||||||    
T  51324 tcttttaagcaataaatacaccttaaaagttgtgacatttacttataaatag 51273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 68895 - 68841
Alignment:
Q  122 atccactaatattgaaa-gaccaacattaaatgaggattagaaaagtcttttaaa 175  Q
    ||||||||||||| ||| ||| ||||||||||||||| || ||||||||||||||    
T  68895 atccactaatattaaaacgacaaacattaaatgaggaataaaaaagtcttttaaa 68841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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