View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6635_low_40 (Length: 233)
Name: NF6635_low_40
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40410251 - 40410474
Alignment:
| Q |
1 |
cccttttcacccctttggtggtgccgttgatgtcattgttgttcagcaacaagatggaacttttcggagcacgccttggtatgtaaggtttggtaaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40410251 |
cccttttcacccctttggtggtgccgttgatgtcattgttgttcagcaacaagatggaacttttcggagcacgccttggtatgtaaggtttggtaaattt |
40410350 |
T |
|
| Q |
101 |
caaggtgttctcaaacgtgccgagaagattgttaagataaatgttaacggggttgaagcgaattttcatatgtatcttgataattctggagaggcttatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40410351 |
caaggtgttctcaaacgtgccgagaagattgttaagataaatgttaacggggttgaagcgaattttcatatgtatcttgataattctggagaggcttatt |
40410450 |
T |
|
| Q |
201 |
ttgtaaaagaggtggatgatgatg |
224 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
40410451 |
ttgtaaaagaggtggatgaggatg |
40410474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 29034964 - 29035167
Alignment:
| Q |
1 |
cccttttcacccctttggtggtgccgttgatgtcattgttgttcagcaacaagatggaacttttcggagcacgccttggtatgtaaggtttggtaaattt |
100 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| || ||| | || || ||||||||||| ||||||||||||||| |
|
|
| T |
29034964 |
cccttttcacccttttggtggtgctgttgatgtgattgttgttcagcaacaagatggtacatttagaagtacaccttggtatgttaggtttggtaaattt |
29035063 |
T |
|
| Q |
101 |
caaggtgttctcaaacgtgccgagaagattgttaagataaatgttaacggggttgaagcgaattttcatatgtatcttgataattctggagaggcttatt |
200 |
Q |
| |
|
||||||||||| ||| |||| || || |||||| |||| |||||| || ||||| | || |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29035064 |
caaggtgttcttaaaggtgctgaaaaagttgttagaataagtgttaatggtgttgagtctaactttcatatgtatcttgataattctggggaggcttatt |
29035163 |
T |
|
| Q |
201 |
ttgt |
204 |
Q |
| |
|
|||| |
|
|
| T |
29035164 |
ttgt |
29035167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University