View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6635_low_44 (Length: 221)

Name: NF6635_low_44
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6635_low_44
NF6635_low_44
[»] chr8 (11 HSPs)
chr8 (105-210)||(18184640-18184745)
chr8 (106-210)||(10203751-10203856)
chr8 (106-210)||(42162685-42162790)
chr8 (104-198)||(12665444-12665539)
chr8 (99-210)||(30432426-30432537)
chr8 (104-210)||(31318892-31318999)
chr8 (104-210)||(36189303-36189408)
chr8 (104-209)||(43186115-43186220)
chr8 (106-210)||(33726098-33726203)
chr8 (114-210)||(44081867-44081964)
chr8 (107-198)||(38845023-38845115)
[»] chr3 (13 HSPs)
chr3 (104-210)||(51339781-51339887)
chr3 (106-210)||(46111943-46112048)
chr3 (95-210)||(44000076-44000192)
chr3 (106-210)||(21559648-21559753)
chr3 (97-205)||(29472901-29473009)
chr3 (108-210)||(36749493-36749596)
chr3 (106-210)||(36370337-36370442)
chr3 (102-210)||(39467097-39467205)
chr3 (105-198)||(30735494-30735588)
chr3 (105-210)||(48200772-48200878)
chr3 (105-210)||(34749896-34750002)
chr3 (106-178)||(39072278-39072350)
chr3 (143-210)||(22894767-22894835)
[»] chr1 (7 HSPs)
chr1 (105-210)||(2509111-2509217)
chr1 (105-207)||(34307136-34307239)
chr1 (108-210)||(19258674-19258776)
chr1 (105-209)||(28647441-28647545)
chr1 (105-210)||(46901733-46901839)
chr1 (106-198)||(9642866-9642957)
chr1 (108-210)||(39249864-39249967)
[»] chr7 (20 HSPs)
chr7 (106-210)||(36346564-36346668)
chr7 (99-210)||(31148377-31148488)
chr7 (105-210)||(45782658-45782764)
chr7 (102-210)||(34828152-34828260)
chr7 (104-210)||(5811161-5811267)
chr7 (105-203)||(13108241-13108339)
chr7 (105-210)||(26972201-26972307)
chr7 (105-210)||(28307493-28307599)
chr7 (103-210)||(46475111-46475219)
chr7 (105-198)||(29953570-29953664)
chr7 (105-210)||(34108513-34108619)
chr7 (105-204)||(42220962-42221061)
chr7 (106-196)||(7699882-7699973)
chr7 (106-196)||(7700080-7700171)
chr7 (106-196)||(7700278-7700369)
chr7 (106-196)||(7700476-7700567)
chr7 (104-210)||(23980218-23980324)
chr7 (105-186)||(36957540-36957620)
chr7 (148-203)||(15020373-15020428)
chr7 (143-210)||(30887787-30887854)
[»] chr4 (8 HSPs)
chr4 (106-191)||(21390955-21391040)
chr4 (105-198)||(44275805-44275898)
chr4 (101-210)||(6112717-6112826)
chr4 (105-198)||(7217864-7217958)
chr4 (108-204)||(35545005-35545102)
chr4 (106-210)||(49243902-49244006)
chr4 (106-210)||(3672361-3672466)
chr4 (105-210)||(28093094-28093200)
[»] chr2 (10 HSPs)
chr2 (104-204)||(16089914-16090014)
chr2 (109-210)||(3830900-3831001)
chr2 (105-210)||(33732656-33732761)
chr2 (102-198)||(37498858-37498955)
chr2 (104-198)||(44958212-44958307)
chr2 (17-97)||(3779377-3779456)
chr2 (103-210)||(36315648-36315756)
chr2 (143-198)||(14573094-14573150)
chr2 (104-210)||(6376236-6376342)
chr2 (145-207)||(41188859-41188921)
[»] chr5 (13 HSPs)
chr5 (105-209)||(31800646-31800750)
chr5 (106-210)||(1815619-1815720)
chr5 (106-210)||(39371014-39371119)
chr5 (104-198)||(27553372-27553465)
chr5 (105-210)||(40887940-40888046)
chr5 (106-210)||(2237363-2237468)
chr5 (106-197)||(13347228-13347320)
chr5 (107-198)||(4300544-4300635)
chr5 (105-210)||(14831631-14831737)
chr5 (168-210)||(17225404-17225446)
chr5 (105-210)||(42683686-42683792)
chr5 (168-210)||(9408101-9408143)
chr5 (168-210)||(19124534-19124576)
[»] chr6 (6 HSPs)
chr6 (105-210)||(13697655-13697760)
chr6 (102-210)||(3986901-3987009)
chr6 (107-210)||(14023021-14023124)
chr6 (105-198)||(3118045-3118139)
chr6 (105-210)||(24208531-24208636)
chr6 (103-209)||(15345656-15345762)
[»] scaffold0043 (1 HSPs)
scaffold0043 (104-183)||(87160-87239)
[»] scaffold0062 (1 HSPs)
scaffold0062 (106-210)||(6805-6910)


Alignment Details
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 18184745 - 18184640
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||||||   ||||||||| | ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||| |||||    
T  18184745 aggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcacccctttt 18184646  T
Q  205 catctc 210  Q
    ||||||    
T  18184645 catctc 18184640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 10203856 - 10203751
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||||||  ||||||||| |||| ||||||||||| |||||| ||||| ||||||||||||||||| ||||||||| ||||  ||||    
T  10203856 ggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  205 catctc 210  Q
    ||||||    
T  10203756 catctc 10203751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 42162790 - 42162685
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||||||| ||||||||| |  ||||||||||||| | |||| |||||  ||||| |||||||||||||||||||||||||  ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  205 catctc 210  Q
    ||||||    
T  42162690 catctc 42162685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 12665539 - 12665444
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    |||||||||||||||||||||   |||||| || | || ||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  12665539 taggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacc 12665444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 30432537 - 30432426
Alignment:
Q  99 tttaataggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    |||| |||||||||||| | |||||||  ||||||||| | || ||||||||| | ||| | ||| |  |||||||||||||||||||||||||||||||    
T  30432537 tttattaggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcacc 30432438  T
Q  199 tcttttcatctc 210  Q
     |||||||||||    
T  30432437 ccttttcatctc 30432426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 31318999 - 31318892
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctctt 202  Q
    |||||||||||||||||||||  |||||||||| |  | |||| |||||| | |||| |||||| ||||| |||||||||||||||||||||||||  ||    
T  31318999 taggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttt 31318900  T
Q  203 ttcatctc 210  Q
    ||||||||    
T  31318899 ttcatctc 31318892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 36189408 - 36189303
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    ||||||||||||||||||||||  ||||||||| | |  ||||||||||| ||| |||||||  ||||||| |||||||| |||||||||||||  ||||    
T  36189408 taggaaaaagataggtagacaccctttttcatacaccacttatgtacacc-catatgttaggggtattttaataattttatatcatatcatcactccttt 36189310  T
Q  204 tcatctc 210  Q
    |||||||    
T  36189309 tcatctc 36189303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 209
Target Start/End: Complemental strand, 43186220 - 43186115
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||||||||  |||||||||| |  | |||||||||||  |||| |||||   |||| |||||||||| ||||||||||||||| |||    
T  43186220 taggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttt 43186121  T
Q  204 tcatct 209  Q
    ||||||    
T  43186120 tcatct 43186115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 33726203 - 33726098
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatca-cctctttt 204  Q
    ||||||||||||||||||||  ||||| ||| | ||   |||||||| ||||||||||||  |||||||||||||| |||||| ||| ||| || |||||    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactttt 33726104  T
Q  205 catctc 210  Q
    ||||||    
T  33726103 catctc 33726098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 44081964 - 44081867
Alignment:
Q  114 ataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctc 210  Q
    ||||||||||||  ||||||||| |  | ||||||||||| | |||| |||||  ||||| ||||||||||||| |||||||||||  ||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctc 44081867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 38845023 - 38845115
Alignment:
Q  107 gaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    ||||||||||| || |||| |||||| ||| | | || ||||||||| | ||||||||||  ||||||||||||||  ||||| |||||||||    
T  38845023 gaaaaagatagataaacaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaatttctcatcacatcatcacc 38845115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 51339781 - 51339887
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    ||||||||||||||||||||||  ||||||||| | || |||||||||| |||||||||||   |||||||||||||||||||||||||||||||  |||    
T  51339781 taggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttt 51339880  T
Q  204 tcatctc 210  Q
    |||||||    
T  51339881 tcatctc 51339887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 46111943 - 46112048
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtaca-cctcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    |||||||||||||||||||| |||||||||| | ||||||| |||| || ||||| |||||  |||||||||||||||||||||||||||||||  ||||    
T  46111943 ggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  205 catctc 210  Q
    ||||||    
T  46112043 catctc 46112048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 210
Target Start/End: Complemental strand, 44000192 - 44000076
Alignment:
Q  95 attatttaataggaaaaagataggtagacactatttttcatatatcttttatgtac-acctcatgtgttaggaatattttagtaattttacatcatatca 193  Q
    |||||| ||||||||||||||||||||||||| ||||||||| |  ||||||||||  |||||||| ||||   ||||| ||||||||||||||||||||    
T  44000192 attattcaataggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatca 44000093  T
Q  194 tcacctcttttcatctc 210  Q
    |||||  ||||||||||    
T  44000092 tcaccctttttcatctc 44000076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 21559753 - 21559648
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    |||||||||||| ||||||| |||||||||| | || ||||||||||| | ||||||||||  ||||||||||||||||||||||||||| |||  ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  205 catctc 210  Q
    ||||||    
T  21559653 catctc 21559648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 97 - 205
Target Start/End: Complemental strand, 29473009 - 29472901
Alignment:
Q  97 tatttaataggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatca 196  Q
    |||| |||||||||||||||||||||||   ||||||||| | |  ||||| ||||| |||||||||||  |||||||||||||||||||||||||||||    
T  29473009 tattgaataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatca 29472910  T
Q  197 cctcttttc 205  Q
     | ||||||    
T  29472909 tcccttttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 36749596 - 36749493
Alignment:
Q  108 aaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttca 206  Q
    ||||||||||||||||||| ||||||||| |  ||||||||||||| |||||| ||||   ||||| |||||||||||||||||||||||||  ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  207 tctc 210  Q
    ||||    
T  36749496 tctc 36749493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 36370337 - 36370442
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||| ||| ||||||||| |  |||||| |||||| |||||| |||||  ||||| |||||||||||||||||||||||||  ||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  205 catctc 210  Q
    ||||||    
T  36370437 catctc 36370442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 39467097 - 39467205
Alignment:
Q  102 aataggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctct 201  Q
    ||||||||||||||||||| ||||  ||||| ||| | ||   ||||||||||||||||||| | ||||||||||||||| | |||| ||| ||||| ||    
T  39467097 aataggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcacccct 39467196  T
Q  202 tttcatctc 210  Q
    |||||||||    
T  39467197 tttcatctc 39467205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 30735494 - 30735588
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaata-ttttagtaattttacatcatatcatcacc 198  Q
    |||||||||||||||||||||  ||||||||| | |  ||||||||||  |||||||||||  || |||||||||||| ||||||||||||||||    
T  30735494 aggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacc 30735588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 48200878 - 48200772
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    ||||||||||||||||||||   ||||||||| |  ||||||||||||| | |||| ||| |  ||||| ||||||||||||||||||||||| |  |||    
T  48200878 aggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttt 48200779  T
Q  204 tcatctc 210  Q
    |||||||    
T  48200778 tcatctc 48200772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 34749896 - 34750002
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||  |||||   ||||||||| |  | ||||||||||| | |||| |||||  ||||| |||||||||||||||||||||||||  |||    
T  34749896 aggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34749995  T
Q  204 tcatctc 210  Q
    |||||||    
T  34749996 tcatctc 34750002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 39072278 - 39072350
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaa 178  Q
    ||||||||||||||||||||  ||||| ||| |||||| ||||||||| ||||||| | |  |||||||||||    
T  39072278 ggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaa 39072350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 22894835 - 22894767
Alignment:
Q  143 ttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctc 210  Q
    ||||||||||| |||||| |||||  ||||| ||||||| ||||||||||||||| |  ||||||||||    
T  22894835 ttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttcatctc 22894767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 2509217 - 2509111
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||||||||| ||||||||| | || ||||||||||| |||||| ||||| ||||||||||||||||||||||||||| ||||  |||    
T  2509217 aggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttt 2509118  T
Q  204 tcatctc 210  Q
    |||||||    
T  2509117 tcatctc 2509111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 34307136 - 34307239
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacac-ctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||||||||  ||||||||| | || |||||||||| | |||||||||||  |||||||||||||||||||||||||||||||  |||    
T  34307136 aggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 34307235  T
Q  204 tcat 207  Q
    ||||    
T  34307236 tcat 34307239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 19258674 - 19258776
Alignment:
Q  108 aaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcat 207  Q
    ||||||||||||||||||  ||||| ||| |||| | ||||||||| |||||||||||||||||||| |||||| |||||| |||| |||| ||||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  208 ctc 210  Q
    |||    
T  19258774 ctc 19258776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 28647545 - 28647441
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    |||||||||||||||||||||  ||||| ||| |||| | ||||||| | |||||||||||||||||||| |||||| |||||| |||| |||| |||||    
T  28647545 aggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccacccctttt 28647446  T
Q  205 catct 209  Q
    |||||    
T  28647445 catct 28647441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 46901733 - 46901839
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    ||||||||||||||||||||   ||||||||| || | ||||||||||| | |||| | |||| ||||| |||||||||||||||||||||||||  |||    
T  46901733 aggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttt 46901832  T
Q  204 tcatctc 210  Q
    |||||||    
T  46901833 tcatctc 46901839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 9642866 - 9642957
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    ||||||||||||||||||| | ||||| ||| |||| ||||| |||| ||||||| |||| || |||||||||||| ||||||||||||||||    
T  9642866 ggaaaaagataggtagacatttttttttatacatctattatgcacacttcatgtg-tagggatgttttagtaatttcacatcatatcatcacc 9642957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 39249864 - 39249967
Alignment:
Q  108 aaaaagataggtagacactatttttcatatatcttttatgtaca-cctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttca 206  Q
    ||||||||||||||||||  ||||||||| | || ||||||||| || ||||| |||||  ||||||||||||||||||| |||||| || |  ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  207 tctc 210  Q
    ||||    
T  39249964 tctc 39249967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 36346564 - 36346668
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||||||  ||||||||| | || ||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  36346564 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacct-tttt 36346662  T
Q  205 catctc 210  Q
    ||||||    
T  36346663 catctc 36346668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 31148488 - 31148377
Alignment:
Q  99 tttaataggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    |||| ||||||||||||||||||||||| ||||||||| | || ||||  ||||| ||| |||||||  |||||||||||||||||||||||||||||||    
T  31148488 tttattaggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacc 31148389  T
Q  199 tcttttcatctc 210  Q
      ||||||||||    
T  31148388 cattttcatctc 31148377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 45782658 - 45782764
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacac-ctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||||||||  ||||| ||| |  |||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||  |||    
T  45782658 aggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 45782757  T
Q  204 tcatctc 210  Q
    |||||||    
T  45782758 tcatctc 45782764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 210
Target Start/End: Complemental strand, 34828260 - 34828152
Alignment:
Q  102 aataggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctct 201  Q
    |||||||||||||||||||||||   ||||||||| | |  ||||| ||||| ||| |||||||  ||||||||||||||||||||||||||||| | ||    
T  34828260 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcact 34828161  T
Q  202 tttcatctc 210  Q
    |||||||||    
T  34828160 tttcatctc 34828152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 5811161 - 5811267
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    ||||||||||||||||||||||  ||||| ||| | ||   |||||||||||||||||||||  |||||||||||||| |||||| ||| ||||| ||||    
T  5811161 taggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt 5811260  T
Q  204 tcatctc 210  Q
    |||||||    
T  5811261 tcatctc 5811267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 203
Target Start/End: Complemental strand, 13108339 - 13108241
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||||||||  ||||| ||| | |||| |||||||||||||||||||||  |||||||||||||| |||||| ||| ||||| ||||    
T  13108339 aggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt 13108241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 26972201 - 26972307
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||||||||  ||||||||| |  | ||||||||||| | |||| |||||  ||||| |||||||||||||||||||||||||  |||    
T  26972201 aggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 26972300  T
Q  204 tcatctc 210  Q
    |||||||    
T  26972301 tcatctc 26972307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 28307493 - 28307599
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    ||||||||||||||||||||   ||||||||| | || ||||||||||| | || ||||| |  |||||||||||||||||||||||||||||||  |||    
T  28307493 aggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttt 28307592  T
Q  204 tcatctc 210  Q
    |||||||    
T  28307593 tcatctc 28307599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 46475219 - 46475111
Alignment:
Q  103 ataggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgtta-ggaatattttagtaattttacatcatatcatcacctct 201  Q
    |||||||||||||||||||||||  ||||| ||| | || | ||||||| ||||||||||| ||  |||||||||||||| |||||| ||| ||||| ||    
T  46475219 ataggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcacccct 46475120  T
Q  202 tttcatctc 210  Q
    |||||||||    
T  46475119 tttcatctc 46475111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 29953570 - 29953664
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    |||||||||||||||||||||  ||||||||| |  | ||||||| || || |||| ||||| |||||| |||||||||||||||||||||||||    
T  29953570 aggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcacc 29953664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 34108619 - 34108513
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacac-ctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||| ||||  ||||||||| |  | |||||||||| | ||||| |||||  ||||| |||||||||||||||||||||||||  |||    
T  34108619 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34108520  T
Q  204 tcatctc 210  Q
    |||||||    
T  34108519 tcatctc 34108513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 42220962 - 42221061
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatatttt-agtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||||||||  ||||||||| | |  ||||||||||  |||||||||||  |||||| |||||||| |||||||||||||||| ||||    
T  42220962 aggaaaaagataggtagacacc-tttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccccttt 42221060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 7699882 - 7699973
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacct-catgtgttaggaatattttagtaattttacatcatatcatca 196  Q
    ||||||||||||||| ||||  ||||||||| | || |||| ||||||| ||||||||| |  |||||||||||||||| ||||||||||||    
T  7699882 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatca 7699973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 7700080 - 7700171
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacct-catgtgttaggaatattttagtaattttacatcatatcatca 196  Q
    ||||||||||||||| ||||  ||||||||| | || |||| ||||||| ||||||||| |  |||||||||||||||| ||||||||||||    
T  7700080 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatca 7700171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 7700278 - 7700369
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacct-catgtgttaggaatattttagtaattttacatcatatcatca 196  Q
    ||||||||||||||| ||||  ||||||||| | || |||| ||||||| ||||||||| |  |||||||||||||||| ||||||||||||    
T  7700278 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatca 7700369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 7700476 - 7700567
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacct-catgtgttaggaatattttagtaattttacatcatatcatca 196  Q
    ||||||||||||||| ||||  ||||||||| | || |||| ||||||| ||||||||| |  |||||||||||||||| ||||||||||||    
T  7700476 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatca 7700567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 23980324 - 23980218
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||||||||   ||||| ||| || ||  ||||||| ||||| ||||||   |||||||||||||| |||||| ||| ||||| ||||    
T  23980324 taggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttt 23980225  T
Q  204 tcatctc 210  Q
    |||||||    
T  23980224 tcatctc 23980218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 36957620 - 36957540
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacat 186  Q
    ||||||||||||||||||||| |||||| ||| | |||| || |||||| |||||||| ||  |||||||||||||||||||    
T  36957620 aggaaaaagataggtagacacaattttttatacacctttcatatacacc-catgtgttgggggtattttagtaattttacat 36957540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 15020428 - 15020373
Alignment:
Q  148 tacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||| ||||||||||||| ||||||||||||||| |||||||||| ||||| ||||    
T  15020428 tacatctcatgtgttagggatattttagtaatttcacatcatatcttcaccccttt 15020373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 30887854 - 30887787
Alignment:
Q  143 ttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatctc 210  Q
    |||| |||||| ||||| ||||   ||||| |||||||||||||||||||||||||  ||||||||||    
T  30887854 ttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctc 30887787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 21390955 - 21391040
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatat 191  Q
    ||||||||||||||||||||  ||||||||| | ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  21390955 ggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatat 21391040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 44275898 - 44275805
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    ||||||||||||| |||||||  ||||||||| | || ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  44275898 aggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacc 44275805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 101 - 210
Target Start/End: Complemental strand, 6112826 - 6112717
Alignment:
Q  101 taataggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctc 200  Q
    |||||||||||||||||||||||||| ||||||||| |  | ||||||||||  ||||| |||||  ||||| ||||||||||||||||||||||| |      
T  6112826 taataggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcct 6112727  T
Q  201 ttttcatctc 210  Q
    ||||||||||    
T  6112726 ttttcatctc 6112717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 7217958 - 7217864
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    |||||||||||||||| ||||  ||||||||| | || ||||||||||| ||||||||||    |||||||||||||||||||||||||||||||    
T  7217958 aggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcacc 7217864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 204
Target Start/End: Complemental strand, 35545102 - 35545005
Alignment:
Q  108 aaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatatttt-agtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||||  ||||||||| | |  ||||||||||  |||||||||||  |||||| ||||||||||||||||||||||||| |||||    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcacccctttt 35545005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 49244006 - 49243902
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttc 205  Q
    ||||||||||| |||||||   ||||||||| | || ||||||||||  ||||| |||||  |||||||||||||||||||||||||||||| | ||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  206 atctc 210  Q
    |||||    
T  49243906 atctc 49243902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 3672466 - 3672361
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||| ||  ||||||||| |  | ||||||||||| |||||| |||||  ||||| ||||||| |||||||||||||||||  ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  205 catctc 210  Q
    ||||||    
T  3672366 catctc 3672361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 28093094 - 28093200
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    ||||||||||||||||||||   ||||||||| |  | ||||||||||| | |||| |||||  ||||| |||| ||||||||||||||||||||  |||    
T  28093094 aggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttt 28093193  T
Q  204 tcatctc 210  Q
    |||||||    
T  28093194 tcatctc 28093200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 16090014 - 16089914
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    ||||||||||||||||||||||  ||||||||| | || ||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||| |||    
T  16090014 taggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccaccttttt 16089915  T
Q  204 t 204  Q
    |    
T  16089914 t 16089914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 210
Target Start/End: Original strand, 3830900 - 3831001
Alignment:
Q  109 aaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcatc 208  Q
    |||||||||||||||||  ||||||||| | || ||||||||||| |||||||||||  ||| ||||||||||||||||| || |||||| |||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  209 tc 210  Q
    ||    
T  3831000 tc 3831001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 33732761 - 33732656
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    |||||||||||||||||||||  ||||||||| | || ||||||||||| ||| | |||||  |||||||||||||||||||||||||| ||||  ||||    
T  33732761 aggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccacccttttt 33732662  T
Q  205 catctc 210  Q
    ||||||    
T  33732661 catctc 33732656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 37498858 - 37498955
Alignment:
Q  102 aataggaaaaagataggtagacactatttttcatatatcttttatgtaca-cctcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    ||||||||||||||||||||||||  ||||| ||| | || ||||||||| || |||||||||||  |||||||||||||||||||||||||||||||    
T  37498858 aataggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcacc 37498955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 44958307 - 44958212
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    |||||||||||||||||||||   ||||||||| | || ||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  44958307 taggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacc 44958212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 3779456 - 3779377
Alignment:
Q  17 cacttaagcctagtggtcagtatataattcaactacttannnnnnnnnggtgtcaactgggttctatacaaccatcacatt 97  Q
    ||||||||| ||||||||| |||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  3779456 cacttaagcttagtggtcattatataattcaactacttatttttttt-ggtgtcaactgggttctatacaaccatcacatt 3779377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 210
Target Start/End: Complemental strand, 36315756 - 36315648
Alignment:
Q  103 ataggaaaaagataggtagaca-ctatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctct 201  Q
    |||||||||||||||||||||| |  ||||| ||| | || ||||||||||||||||||| |||  ||||||| | |||| |||||| || |||||||||    
T  36315756 ataggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctct 36315657  T
Q  202 tttcatctc 210  Q
    ||| |||||    
T  36315656 ttttatctc 36315648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 14573150 - 14573094
Alignment:
Q  143 ttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    ||||||||||| | ||||||||||  |||||||||||||||||||||||||||||||    
T  14573150 ttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcatcacc 14573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 6376236 - 6376342
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||||||||   ||||| ||| | ||   ||||||| ||||||||||||   |||||||||||||| |||||| ||| |||||  |||    
T  6376236 taggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattt 6376335  T
Q  204 tcatctc 210  Q
    |||||||    
T  6376336 tcatctc 6376342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 41188921 - 41188859
Alignment:
Q  145 atgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttcat 207  Q
    ||||||| | ||||||| ||  |||||||||||||||||||||| ||||||| | ||||||||    
T  41188921 atgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatcccttttcat 41188859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 209
Target Start/End: Complemental strand, 31800750 - 31800646
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    |||||||||||||| ||||||  ||||||||| | || || |||||||| ||| |||||||  ||||||||||||||||||||||||||||||| |||||    
T  31800750 aggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  205 catct 209  Q
    |||||    
T  31800650 catct 31800646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 1815619 - 1815720
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttc 205  Q
    ||||||||||||||||||||  ||||||||| |      |||||||||  ||||||||||  ||||||||||||||||||||||||||||||| ||||||    
T  1815619 ggaaaaagataggtagacaccttttttcataaagaa---atgtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 1815715  T
Q  206 atctc 210  Q
    |||||    
T  1815716 atctc 1815720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 39371119 - 39371014
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||||||  ||||||||| |  | ||||||||||| | |||| |||||  ||||| |||||||||||||||||||||||||  ||||    
T  39371119 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  205 catctc 210  Q
    ||||||    
T  39371019 catctc 39371014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 27553372 - 27553465
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    ||||||||| |||| |||||||  ||||||||| | || |||||||||||  ||||||||||| ||||||||||||||||||||| || ||||||    
T  27553372 taggaaaaa-atagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcacc 27553465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 210
Target Start/End: Original strand, 40887940 - 40888046
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||||||||  ||||||||| | || ||||||||||| | || | ||||   |||||||||||||||||||||||||| ||||  |||    
T  40887940 aggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttt 40888039  T
Q  204 tcatctc 210  Q
    |||||||    
T  40888040 tcatctc 40888046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 2237468 - 2237363
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||||||  ||||||||| |  | ||||||||||| | | || |||||  ||||| |||||||||||||||||||||||||  ||||    
T  2237468 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  205 catctc 210  Q
    ||||||    
T  2237368 catctc 2237363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 13347320 - 13347228
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcac 197  Q
    ||||||||||||||||||||  ||||||||| |  | ||||||||||| |||||| |||||  ||||| ||||||| ||||||||||||||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcac 13347228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 4300544 - 4300635
Alignment:
Q  107 gaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    ||||||||| | ||||||   ||||| ||| |||| | ||||||||||||||||||||| |||||||| |||||| |||||| |||| ||||    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccacc 4300635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 14831737 - 14831631
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    |||||||||||||||| ||||  ||||||||| |  | ||||||||||| | | || |||||  ||||| | |||||||||||||||||||||||  |||    
T  14831737 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttt 14831638  T
Q  204 tcatctc 210  Q
    |||||||    
T  14831637 tcatctc 14831631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 17225446 - 17225404
Alignment:
Q  168 tattttagtaattttacatcatatcatcacctcttttcatctc 210  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  17225446 tattttagtaatttcacatcacatcatcacctcttttcatctc 17225404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 42683792 - 42683686
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctc-atgtgttaggaatattttagtaattttacatcatatcatcacctcttt 203  Q
    ||||||||||||| ||||||   ||||||||| | || ||||||||||| | || | |||||  |||||||||||||||||||||||||| || |  |||    
T  42683792 aggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttt 42683693  T
Q  204 tcatctc 210  Q
    |||||||    
T  42683692 tcatctc 42683686  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 9408101 - 9408143
Alignment:
Q  168 tattttagtaattttacatcatatcatcacctcttttcatctc 210  Q
    ||||| |||||||||||||||||||||||||  ||||||||||    
T  9408101 tatttgagtaattttacatcatatcatcaccctttttcatctc 9408143  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 19124534 - 19124576
Alignment:
Q  168 tattttagtaattttacatcatatcatcacctcttttcatctc 210  Q
    |||||||||||||||||||||||||||||| |  |||||||||    
T  19124534 tattttagtaattttacatcatatcatcacattctttcatctc 19124576  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 13697760 - 13697655
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    |||||||||||||||||| |  |||||||||| ||   ||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||  ||||    
T  13697760 aggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgtttt 13697661  T
Q  205 catctc 210  Q
    ||||||    
T  13697660 catctc 13697655  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 210
Target Start/End: Original strand, 3986901 - 3987009
Alignment:
Q  102 aataggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctct 201  Q
    |||||||||||||||||||||||  |||||||||| || | ||||||| ||| ||||| ||| |  ||||| |||||||||||||||||| |||| | ||    
T  3986901 aataggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatccct 3987000  T
Q  202 tttcatctc 210  Q
    |||||||||    
T  3987001 tttcatctc 3987009  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 210
Target Start/End: Complemental strand, 14023124 - 14023021
Alignment:
Q  107 gaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctcttttca 206  Q
    |||||||||||||||||||  ||||| ||| | ||   |||||||||||||||||||||  |||||||||||||| |||||| ||| ||||| ||| |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  207 tctc 210  Q
    ||||    
T  14023024 tctc 14023021  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 3118045 - 3118139
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacac-ctcatgtgttaggaatattttagtaattttacatcatatcatcacc 198  Q
    ||||||||||||||||||||   ||||||||| |||| |||||||||| | ||||| |||||  |||||||||||||||||||||| ||| ||||    
T  3118045 aggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccacc 3118139  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 210
Target Start/End: Complemental strand, 24208636 - 24208531
Alignment:
Q  105 aggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||||||   ||||| ||| | || | || ||||||||||||||||||  |||||||||||||| |||||| ||| |||||  ||||    
T  24208636 aggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccttttt 24208537  T
Q  205 catctc 210  Q
    ||||||    
T  24208536 catctc 24208531  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 15345656 - 15345762
Alignment:
Q  103 ataggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaattttacatcatatcatcacctctt 202  Q
    |||||||||| |||||||||||   ||||||||| |  | |||||||||||  |||| |||||   |||| |||||||| | ||||||||||||||| ||    
T  15345656 ataggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcacctttt 15345755  T
Q  203 ttcatct 209  Q
    |||||||    
T  15345756 ttcatct 15345762  T

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Target: scaffold0043 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 87160 - 87239
Alignment:
Q  104 taggaaaaagataggtagacactatttttcatatatcttttatgtacacctcatgtgttaggaatattttagtaatttta 183  Q
    ||||||||||||||||||||||  ||||||||| | |||||||||||||| |||||||||||  ||||||||||||||||    
T  87160 taggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaatttta 87239  T

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Target: scaffold0062 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 6910 - 6805
Alignment:
Q  106 ggaaaaagataggtagacactatttttcatatatcttttatgtacacc-tcatgtgttaggaatattttagtaattttacatcatatcatcacctctttt 204  Q
    ||||||||||||||||| ||  ||||||||| |  | ||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||  ||||    
T  6910 ggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  205 catctc 210  Q
    ||||||    
T  6810 catctc 6805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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