View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6635_low_7 (Length: 493)
Name: NF6635_low_7
Description: NF6635
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6635_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 477
Target Start/End: Original strand, 279067 - 279532
Alignment:
| Q |
12 |
gaatatggtaacttaaatgaaccaaaatatggacatcttaaaagactccatgctgccataaagttaggagagaaggttcgtaccaatggcactgctactt |
111 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
279067 |
gaatatggtaacttaattgaaccaaaatatggacatcttaaaagactccatgctgccataaagttaggagagaaggttctcaccaatggcactgctactt |
279166 |
T |
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| Q |
112 |
gggagagtcatggagattatttatggatgactacttatacaaataaggacactggacaaaaaatttgttttttgagtaattcacatacctctaaagatgc |
211 |
Q |
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| T |
279167 |
gggagagtcatggagattctttatggatgactacttatacaaataagggcactggacaaaaattttgttttttgagtaattcacatacctctaaagatgc |
279266 |
T |
|
| Q |
212 |
tgaagttgatttacaacaagatggaaagtattatgtttctgcttggtcaatgtcccttctccaagactgcaacaaagaagtttacaacactgcaaagacg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279267 |
tgaagttgatttacaacaagatggaaagtattatgttcctgcttggtcaatgtcccttctccaagactgcaacaaagaagtttacaacactgcaaagact |
279366 |
T |
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| Q |
312 |
gaagcacaaacaaatatttatatgaagcaactacatcaaaaattaggaaactctcccgagtggtcatggacatccgacccaatggaagacacttttcaag |
411 |
Q |
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| T |
279367 |
gaagcacaaacaaatatttatatgaagcaactagatcaaaaattaggaaactcgcccgagtggtcatggacatccgacccaatggaagacacttttcaag |
279466 |
T |
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| Q |
412 |
gtaaagggacatttactgcatctcaacttttagatcaaaagagtgttaccgttggtgctagtgatt |
477 |
Q |
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| T |
279467 |
gtaaagggacatttactgcatctcaacttttagatcaaaagagtgttaccgttggtgctagtgatt |
279532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 477
Target Start/End: Original strand, 289877 - 289977
Alignment:
| Q |
377 |
atggacatccgacccaatggaagacacttttcaaggtaaagggacatttactgcatctcaacttttagatcaaaagagtgttaccgttggtgctagtgat |
476 |
Q |
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|||| ||||||| |||||| ||||||| || | ||| ||||||||||||||||||||| |||||||| ||||||||| |||||||| ||| ||||||||| |
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| T |
289877 |
atgggcatccgaaccaatgcaagacaccttactaggcaaagggacatttactgcatctaaacttttaaatcaaaagaatgttaccgctggagctagtgat |
289976 |
T |
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| Q |
477 |
t |
477 |
Q |
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| T |
289977 |
t |
289977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 377 - 477
Target Start/End: Original strand, 24524931 - 24525031
Alignment:
| Q |
377 |
atggacatccgacccaatggaagacacttttcaaggtaaagggacatttactgcatctcaacttttagatcaaaagagtgttaccgttggtgctagtgat |
476 |
Q |
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|||| |||| || |||||| ||||||| || | ||| ||||||||||||||||||||| |||||||||||||||||| |||||| | ||| ||||||||| |
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| T |
24524931 |
atgggcatctgaaccaatgcaagacaccttaccaggcaaagggacatttactgcatctaaacttttagatcaaaagaatgttactgctggagctagtgat |
24525030 |
T |
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| Q |
477 |
t |
477 |
Q |
| |
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| |
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| T |
24525031 |
t |
24525031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 377 - 477
Target Start/End: Original strand, 24531604 - 24531704
Alignment:
| Q |
377 |
atggacatccgacccaatggaagacacttttcaaggtaaagggacatttactgcatctcaacttttagatcaaaagagtgttaccgttggtgctagtgat |
476 |
Q |
| |
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|||| |||| || |||||| ||||||| || | ||| |||||||||||||||||||| |||||||||||||||||| |||||| | ||| ||||||||| |
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| T |
24531604 |
atgggcatctgaaccaatgcaagacaccttactaggccaagggacatttactgcatctaaacttttagatcaaaagaatgttactgctggagctagtgat |
24531703 |
T |
|
| Q |
477 |
t |
477 |
Q |
| |
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| |
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| T |
24531704 |
t |
24531704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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