View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6636_high_11 (Length: 467)
Name: NF6636_high_11
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 10091636 - 10091783
Alignment:
| Q |
109 |
cgatgtctgctatcaatatggaatagcttatgcttcactttctatggcagaatgtaacttcattaattagttcctttcacatcaattctgaaattacaat |
208 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10091636 |
cgatgtctactatcaatatggaatagcttatgcttcactttctatggcagcatgtaacttcatta----gttcctttcacatcaattctgaaattacaat |
10091731 |
T |
|
| Q |
209 |
acaaaaatgttatcattctgttttatgaacttgtatttattctttggagaat |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10091732 |
acaaaaatgttatcattctgttttatgaacttgtatttattctttggagaat |
10091783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 10095314 - 10095465
Alignment:
| Q |
18 |
tgatgtatgaacaggaaatttaggaaacttggcaataatcattattccagctatatgcaaagacaaaggtagtccttttggagatcctgatcgatgtctg |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
10095314 |
tgatgtatcaacaggaaatttaggaaacttgcctataataattattccagctatatgcaaagacaaaggtagtccttttggagatcct----gatgtatg |
10095409 |
T |
|
| Q |
118 |
ctatcaatatggaatagcttatgcttcactttctatggcagaatgtaacttcatta |
173 |
Q |
| |
|
|||||||| ||| || ||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
10095410 |
ctatcaatttgggatggcttatgcttcactttctatggcagtatgtaatttcatta |
10095465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 262 - 419
Target Start/End: Original strand, 10095745 - 10095897
Alignment:
| Q |
262 |
aaaccatagattggagctgtttttatatggacttatgtgtacagtacaacataatgcggatttcgtcaaataaagttcacaaagaaggtaacagaagtag |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||| || |||||||||||| |||||| |||||| |
|
|
| T |
10095745 |
aaaccatagattggagctgtttttatatggacttacgt-----gtacaacataatgcggatttcttcaagaaatgttcacaaagaatgtaacaaaagtag |
10095839 |
T |
|
| Q |
362 |
tgattccatcaccttggaggcttcaggagatgtatcagaatcactcatagaggaaggc |
419 |
Q |
| |
|
|||||||||||||||||||| |||| | ||||||||| ||||| |||||||||||||| |
|
|
| T |
10095840 |
tgattccatcaccttggaggattcaagggatgtatcacaatcaatcatagaggaaggc |
10095897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 30671727 - 30671588
Alignment:
| Q |
27 |
aacaggaaatttaggaaacttggcaataatcattattccagctatatgcaaagacaaaggtagtccttttggagatcctgatcgatgtctgctatcaata |
126 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| |||||||| ||||| || || ||||| |||||||||||||| |||| || ||||| || |||| |
|
|
| T |
30671727 |
aacaggaaatttaggaaacttgcctataatcatcattccagccatatgtaaggagaaaggaagtccttttggagaccctgttc----tctgccataaata |
30671632 |
T |
|
| Q |
127 |
tggaatagcttatgcttcactttctatggcagaatgtaacttca |
170 |
Q |
| |
|
||| || ||||||| ||||||||||||||| | ||| ||||||| |
|
|
| T |
30671631 |
tgggatggcttatgtttcactttctatggcggtatgcaacttca |
30671588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University