View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_high_13 (Length: 459)
Name: NF6636_high_13
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 47 - 443
Target Start/End: Original strand, 24471302 - 24471698
Alignment:
| Q |
47 |
ttccaagactgtctgtgacttgaccactcatcatattccaaacttcctgtgtttgaaaagggttcggaattagttaggttgtgcatgtacaaacagaatt |
146 |
Q |
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| T |
24471302 |
ttccaagactgtctgtgacttgaccactcatcatattccaaacttcctgtgtttgaaaagggttcggaattagttaggttgtgcatgtacaaacagaatt |
24471401 |
T |
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| Q |
147 |
tggaataatatgcaaacatttgattgaatggagaattcaataccataatttcccaaagcgtcaataatacgaataacgagtatcaacaggatgctgtcat |
246 |
Q |
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| T |
24471402 |
tggaataatatgcaaacacttgattgaatggagaattcaataccataatttcccaaagcgtcaataatacgaataacgagtatcaacaggatgctgtcat |
24471501 |
T |
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| Q |
247 |
cagatttattctcgatgacatatctgttaaacagacaaagtttaatagcatttccggatcgaaaaccacatagtcataagttgaagggatgatgcataga |
346 |
Q |
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| T |
24471502 |
cagatttattctcgatgacatatctgttaaacagacaaagtttaatagcatttccggatcgaaaaccacatagtcataagttgaagggatgatgcataga |
24471601 |
T |
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| Q |
347 |
gtagcaatatatgtgacacttacttgcaggctgcatgtacaatttcagtagccttttctctcagagcagtagttccaacagtacagcctgttgcccc |
443 |
Q |
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| T |
24471602 |
gtagcaatatatgtgacacttacttgcaggctgcatgtacaatttcagtagccttttctctcagagcagtagttccaacagtacagcctgttgcccc |
24471698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 127 - 443
Target Start/End: Original strand, 24453896 - 24454216
Alignment:
| Q |
127 |
gtgcatgtacaaacagaatttggaataatatgcaaacatttgattgaatggagaattcaataccataatttcccaaagcgtcaataatacgaataacgag |
226 |
Q |
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| T |
24453896 |
gtgcatgtacaaacagaatttggaataatatgcatacacttgattggatggagaattcaataccataatttcccaaagcctcaataatagcaataacgag |
24453995 |
T |
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| Q |
227 |
tatcaacaggatgctgtcatcagatttattctcgatgacatatctgttaaacagacaaagtttaatagcatttccg----gatcgaaaaccacatagtca |
322 |
Q |
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||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
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| T |
24453996 |
tatcaacaggaagctgtcgtcagatttattctcaatgacatatctgttaaacagacaaagtttaatagcatttccggattgatcgaaaaccacatacaca |
24454095 |
T |
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| Q |
323 |
taagttgaagggatgatgcatagagtagcaatatatgtgacacttacttgcaggctgcatgtacaatttcagtagccttttctctcagagcagtagttcc |
422 |
Q |
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| T |
24454096 |
taagttgaagggatgatgtgtagagtagcagtaaatgtgacccttacttgcaggctgcatgtacaatctcagtagctttaactctcagagcagtagttcc |
24454195 |
T |
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| Q |
423 |
aacagtacagcctgttgcccc |
443 |
Q |
| |
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||||||||||||||||||||| |
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| T |
24454196 |
aacagtacagcctgttgcccc |
24454216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 47 - 134
Target Start/End: Original strand, 24453673 - 24453760
Alignment:
| Q |
47 |
ttccaagactgtctgtgacttgaccactcatcatattccaaacttcctgtgtttgaaaagggttcggaattagttaggttgtgcatgt |
134 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24453673 |
ttccaagactgtctgtgacttgaccagtcatcatattccatacttcctgtgtttgaaaagggttcggaattagttaggttgtgcatgt |
24453760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 24454751 - 24454788
Alignment:
| Q |
12 |
tcatcacagggaatatgccactttggagtcaacctttc |
49 |
Q |
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| T |
24454751 |
tcatcacagggaatatgccactttggagtcaacctttc |
24454788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 24472249 - 24472286
Alignment:
| Q |
12 |
tcatcacagggaatatgccactttggagtcaacctttc |
49 |
Q |
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| T |
24472249 |
tcatcacagggaatatgccactttggaatcaacctttc |
24472286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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