View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6636_high_2 (Length: 827)

Name: NF6636_high_2
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6636_high_2
NF6636_high_2
[»] chr8 (3 HSPs)
chr8 (13-521)||(31015714-31016227)
chr8 (713-759)||(12656428-12656474)
chr8 (710-760)||(27305598-27305648)
[»] scaffold0340 (1 HSPs)
scaffold0340 (710-760)||(16816-16866)
[»] chr7 (5 HSPs)
chr7 (710-764)||(2469290-2469343)
chr7 (710-810)||(8068139-8068239)
chr7 (715-810)||(1732502-1732597)
chr7 (715-794)||(16799221-16799300)
chr7 (717-760)||(26133374-26133417)
[»] chr6 (1 HSPs)
chr6 (710-770)||(15550926-15550986)
[»] chr4 (4 HSPs)
chr4 (710-752)||(19084042-19084084)
chr4 (710-752)||(20314238-20314280)
chr4 (710-753)||(4611682-4611725)
chr4 (712-753)||(21166650-21166691)
[»] chr5 (1 HSPs)
chr5 (715-753)||(32416001-32416039)
[»] chr3 (1 HSPs)
chr3 (715-753)||(20338397-20338435)
[»] chr1 (1 HSPs)
chr1 (573-634)||(10828520-10828581)


Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 13 - 521
Target Start/End: Complemental strand, 31016227 - 31015714
Alignment:
Q  13 aaaataaagtatgagaagttcttgactctttttgatacaatcttcaacttattggatgaaaatgtgtctagcataaaatggtgggactcattcaacaaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31016227 aaaataaagtatgagaagttcttgactctttttgatacaatcttcaacttattggatgaaaatgtgtctagtataaaatggtgggactcattcaacaaaa 31016128  T
Q  113 ttagcatttctctgtcctgtaatatgtgtcactatattgagattagatagatataaatgtttgatgaaaatatttttgaagcataaatcttaacatgtgt 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31016127 ttagcatttctctgtcctgtaatatgtgtcactatattgaaattagatagatataaatgtttgatgaaaatatttttgaagcataaatcttaacatgtgt 31016028  T
Q  213 cgaactaaaaattcagattatactcatgcctagtgatccagtatgaaccattatttgaagaaatcacatagttagatattgagtacacattactctcttt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31016027 cgaactaaaaattcagattatactcatgcctagtgatccagtatgaaccattatttgaagaaatcacatagttagatattgagtacacattactctcttt 31015928  T
Q  313 agtgtttctctccnnnnnnnt----tatactctcttttgtgtctttatc-aaacttatatatgaaagtacaacgcacaataatgtgaaatttgttgccct 407  Q
    |||||||||||||       |     ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31015927 agtgtttctctccaaaaaaataaaaaatactctcttttgtgtctttatcaaaacttatatatgaaagtacaacgcacaataatgtgaaatttgttgccct 31015828  T
Q  408 ggaaaatgtgacaaacacttaaagggttcaatccaaaaatcaatacatgttgtcctataatatatatcactaacattcacctaaaaattaatacatatat 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31015827 ggaaaatgtgacaaacacttaaagggttcaatccaaaaatcaatacatgttgtcctataatatatatcactaacattcacctaaaaattaatacatatat 31015728  T
Q  508 ggttcaatccatgg 521  Q
    ||||||||||||||    
T  31015727 ggttcaatccatgg 31015714  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 713 - 759
Target Start/End: Original strand, 12656428 - 12656474
Alignment:
Q  713 taggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaa 759  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||    
T  12656428 taggtgtttttgatgtaattgactgcaaaatcatgcaaatcagcaaa 12656474  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 27305648 - 27305598
Alignment:
Q  710 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaag 760  Q
    ||||||||||||||||||||||| ||| |||| |||||||||||| |||||    
T  27305648 tcttaggtgtttttgatgtaattcaatacaaattcatgcaaatcagcaaag 27305598  T

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Target: scaffold0340 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 16866 - 16816
Alignment:
Q  710 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaag 760  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  16866 tcttaggagtttttgatgtaattcaatgcaaaatcatgcaaatcagcaaag 16816  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 710 - 764
Target Start/End: Complemental strand, 2469343 - 2469290
Alignment:
Q  710 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaa 764  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||    
T  2469343 tcttaggtgtttt-gatgtaattcaatgcaaaatcatgcaaatcgacaaagtaaa 2469290  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 710 - 810
Target Start/End: Original strand, 8068139 - 8068239
Alignment:
Q  710 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagag 809  Q
    ||||||||||||||||||||  | | |||||||||||| || || |||||| ||| ||||||| |||||||| | |||| ||||| |||| ||| |||||    
T  8068139 tcttaggtgtttttgatgtatgtcattgcaaaatcatgtaattcgacaaagcaaagcaccatatgaagaattggaaagacaatgaatgaatattcaagag 8068238  T
Q  810 g 810  Q
    |    
T  8068239 g 8068239  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 810
Target Start/End: Complemental strand, 1732597 - 1732502
Alignment:
Q  715 ggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatgagtgaagatttaagagg 810  Q
    |||||||||||||||||| ||  ||||||||||||||||  ||||| |||||| | ||  | || ||||||||| ||||| | |||||| ||||||    
T  1732597 ggtgtttttgatgtaattcaagacaaaatcatgcaaatcggcaaagcaaaacatcttataaggagttaggaagacaatgaataaagattcaagagg 1732502  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 794
Target Start/End: Original strand, 16799221 - 16799300
Alignment:
Q  715 ggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacaccataggaagaattaggaagataatga 794  Q
    |||||||||||||| |||||| |||||||||||||||||  ||||| ||| || | |  ||||| ||||||||| |||||    
T  16799221 ggtgtttttgatgtgatttaaggcaaaatcatgcaaatcgtcaaagcaaagcatcttgtgaagatttaggaagacaatga 16799300  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 717 - 760
Target Start/End: Original strand, 26133374 - 26133417
Alignment:
Q  717 tgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaag 760  Q
    |||||||||||||||| || ||||||||||||||||| ||||||    
T  26133374 tgtttttgatgtaattcaaggcaaaatcatgcaaatcgacaaag 26133417  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 710 - 770
Target Start/End: Complemental strand, 15550986 - 15550926
Alignment:
Q  710 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatcaacaaagtaaaacacca 770  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| || ||| ||| |||||    
T  15550986 tcttaggtgtttttgatgtaattcaatgcaaaattatgcaaatcgacgaagcaaagcacca 15550926  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 752
Target Start/End: Original strand, 19084042 - 19084084
Alignment:
Q  710 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaat 752  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  19084042 tcttagatgtttttgatgtaattcaatgcaaaatcatgcaaat 19084084  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 752
Target Start/End: Original strand, 20314238 - 20314280
Alignment:
Q  710 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaat 752  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  20314238 tcttaggtgtttttgatgtaattaaatgtaaaatcatgcaaat 20314280  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 753
Target Start/End: Original strand, 4611682 - 4611725
Alignment:
Q  710 tcttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatc 753  Q
    ||||||||||||||||||||||| | |||||||| |||||||||    
T  4611682 tcttaggtgtttttgatgtaattcattgcaaaataatgcaaatc 4611725  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Original strand, 21166650 - 21166691
Alignment:
Q  712 ttaggtgtttttgatgtaatttaatgcaaaatcatgcaaatc 753  Q
    ||||||||||||||||||||| ||||||||||| || |||||    
T  21166650 ttaggtgtttttgatgtaattcaatgcaaaatcgtgtaaatc 21166691  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 753
Target Start/End: Original strand, 32416001 - 32416039
Alignment:
Q  715 ggtgtttttgatgtaatttaatgcaaaatcatgcaaatc 753  Q
    |||||||||||||||||| || |||||||||||||||||    
T  32416001 ggtgtttttgatgtaattcaaggcaaaatcatgcaaatc 32416039  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 753
Target Start/End: Original strand, 20338397 - 20338435
Alignment:
Q  715 ggtgtttttgatgtaatttaatgcaaaatcatgcaaatc 753  Q
    |||||||||||||||||| || |||||||||||||||||    
T  20338397 ggtgtttttgatgtaattaaaggcaaaatcatgcaaatc 20338435  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 634
Target Start/End: Complemental strand, 10828581 - 10828520
Alignment:
Q  573 gcatatttttcagtcattttaattatggtttaattaagattataggagtttcagaacaattg 634  Q
    ||||||||||||||||||||| ||| | ||| ||| | ||||| ||||||| ||||||||||    
T  10828581 gcatatttttcagtcattttacttaagtttttattcaaattattggagttttagaacaattg 10828520  T

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