View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_high_24 (Length: 380)
Name: NF6636_high_24
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 39556525 - 39556876
Alignment:
| Q |
19 |
ataactactgcagactaagtggcagcttgtgatgttccttaaagcaaacaaatacatattgacctggtaaaatttctctcctaaccacaacgcttgcatg |
118 |
Q |
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| T |
39556525 |
ataactactgcagactaagtggcagcttgtgatgttccttaaagcaaacaaatacatattgacctggtaaaatttctctcctaaccacaacgcttgcatg |
39556624 |
T |
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| Q |
119 |
ctttatgtaaataatcttaccaaaaccattagctctgatataacattcaaaaacttttgtttctacaatttcttagccatacattgactttgtccatcac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39556625 |
ctttatgtaaataatcttaccaaaaccattagctctgatataacattcaaaaacttttgtttctacaatttcttagccatacattgactttgtccatcac |
39556724 |
T |
|
| Q |
219 |
catcttattaaattcaagcataaaggacaaactaaaggtcatttttcgatattaagataccaatttcacaaattaattatccataggccctgccctacta |
318 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39556725 |
catcttattaaattcaagcataaaggacaaagtaaaggtcatttttcgatattaagataccaatttcacaaattaattatccataggccctgccctacta |
39556824 |
T |
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| Q |
319 |
acatttcccccctcaaataaatnnnnnnngttaacattttcttttgcttcat |
370 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
39556825 |
acattttccccctcaaataaataaaaaaagttaacattttcttttgcttcat |
39556876 |
T |
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