View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_high_29 (Length: 318)
Name: NF6636_high_29
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 13 - 303
Target Start/End: Complemental strand, 39893888 - 39893598
Alignment:
| Q |
13 |
aatatacgttggttattcaaaggtaacatcacattggacatatattaaatatcatgcaaaatataacataaaaacacaccaatcaaattacctgtttggc |
112 |
Q |
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| T |
39893888 |
aatatacgttggttattcaaaggtaacatcacattggacatatactaagtatcatgcaaaatataacataaaaacacaccaatcaaattacctgtttggc |
39893789 |
T |
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| Q |
113 |
cacaaattcagggtaattgtcctgaaacagttgaagggcttgtttggtagcttgtctaagttcccatttacctggtccaggagaatccttaagatcattg |
212 |
Q |
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| T |
39893788 |
cacaaattcagggtaattgtcctgaaacagttgaagggcttgtttggtagcttgtctaagttcccatttacctggtccaggagaatccttaagatcattg |
39893689 |
T |
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| Q |
213 |
acatgaacaatggtgcatacaccaccattgttaaaatccaaattcctaatactcttctcaaggaactgaattctccatttaaggaaattat |
303 |
Q |
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| T |
39893688 |
acatgaacaatggtgcaaacaccaccatggttaaaatccaaattcctaatactcttctcaaggaactgaattctccatttaaggaaattat |
39893598 |
T |
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Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 101 - 292
Target Start/End: Complemental strand, 44642338 - 44642147
Alignment:
| Q |
101 |
tacctgtttggccacaaattcagggtaattgtcctgaaacagttgaagggcttgtttggtagcttgtctaagttcccatttacctggtccaggagaatcc |
200 |
Q |
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|||||||||||| ||||||||||| ||||| || |||| || |||||||||||||||||||||||||||||| |||||||| ||||||||||||| | |
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| T |
44642338 |
tacctgtttggctacaaattcaggataattatcttgaagcaattgaagggcttgtttggtagcttgtctaagctcccatttggtaggtccaggagaattc |
44642239 |
T |
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| Q |
201 |
ttaagatcattgacatgaacaatggtgcatacaccaccattgttaaaatccaaattcctaatactcttctcaaggaactgaattctccattt |
292 |
Q |
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| T |
44642238 |
ttaagatcattaacctgaacaatggtgcatataccaccaggggtaaaatccaatttccttatactcttctccaagaccagaattctccattt |
44642147 |
T |
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