View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_high_3 (Length: 695)
Name: NF6636_high_3
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 80 - 419
Target Start/End: Complemental strand, 43038043 - 43037726
Alignment:
| Q |
80 |
ggactatttatttaaccaaccatttaaaatttaataatttctataaacaaaacggcaacatgcaatgcatcatcttttgaatcattatcccgggaaagca |
179 |
Q |
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| T |
43038043 |
ggactatttatttaaccaaccatttaaaatttaataatttctataaacaaaacggcaacatgca-----tcatctttttaatcattatcccgggaaagca |
43037949 |
T |
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| Q |
180 |
tccaaataaaaaagatgcgtaaactaaagagtgagaacttagaatagaagtgtttcttaagctgaaattgaattgaacattcctactctactactagttg |
279 |
Q |
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| T |
43037948 |
tccaaataaaaaagatgcgtaaa-----gagtgagaacttagaatagaagtgtttcttaagctgaaattgaattgaacattcctactctacta---gttg |
43037857 |
T |
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| Q |
280 |
ttctacaatggatccattccatgcccctttgttcgtctcgtagtagaatccctcactctcaaactactttcctctccaactaaaccactcccactttcca |
379 |
Q |
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| T |
43037856 |
ttctacaatggatccat-----gcccctttgttcgtctcgtagtagaatccctcactctcaaactactttcctctccaactaaaccactcacactttcca |
43037762 |
T |
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| Q |
380 |
acgttcacccctccaccactcactccatgcttctgcaaaa |
419 |
Q |
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| T |
43037761 |
acgttcacccctccacc----actccatgcttctgcaaaa |
43037726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 488 - 678
Target Start/End: Complemental strand, 43037657 - 43037466
Alignment:
| Q |
488 |
attcaacaacctccgcccccgctttccaccttgactatgccgctctccatcgtctctccggcaaactcctcac-ctctccatctttgtttacaacggccc |
586 |
Q |
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| T |
43037657 |
attcaacaacctccgcccccgctttccaccttgactatgctgctctccatcgtctctccggcaaactcctcactctctccatctttgtttacaacggccc |
43037558 |
T |
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| Q |
587 |
aattggccgcaactgtggcgtccgcaatgccaagctactcggtcgtgtccttcttcccattcaattacctacctcattctcttcccccaata |
678 |
Q |
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| T |
43037557 |
aattggccgcaactgtggcgtccgcaatgccaagctactcggtcgtgtccttcttcccattcaattacctacctcattctcttcccccaata |
43037466 |
T |
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