View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6636_high_33 (Length: 282)
Name: NF6636_high_33
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_high_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 5 - 263
Target Start/End: Complemental strand, 28164734 - 28164454
Alignment:
| Q |
5 |
tgtcgaagaatatacaaaattgaagctcagaatattacaaagttgacaccaaagatcctctgtcagcccacattgaaagaaaaactaaggcatggtttca |
104 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28164734 |
tgtctaagaataatcaaaattgaagatcagaatattacaaagttgacaccaaagatcctctgtcagcccacattgaaagaaaaactaaggcatggtttca |
28164635 |
T |
|
| Q |
105 |
tgatcattttcacagacactgcacattgacacaacctctgtttcaaagttt-ttcatcggtaggcatccatcttagcaatct------------------ |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28164634 |
tgatcattttcacagacactgcacattgacacaacctctgtttcaaagtttgttcatcggtaggcatccatcttagcaatctccaaatcaaaaaggattt |
28164535 |
T |
|
| Q |
186 |
---tcgaggaatagtagcataccaaaccatcatgtcgtatatttcaatcacacacacttaatccaatatcagaatcacact |
263 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28164534 |
ggatggaggaatagtagcataccaaaccatcatgtcgtatatttcaatcacacacacttaatccaatatcagaatcacact |
28164454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University