View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_high_41 (Length: 236)
Name: NF6636_high_41
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 11663750 - 11663639
Alignment:
| Q |
10 |
catcatcaaataagttaagttgtttatttactttgttatttatctagttgtaaatattattatctaataaaccattgtatatattcatgcaaaaattgat |
109 |
Q |
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| T |
11663750 |
catcattaaataagttaagtagttaatttactttgttatttatctagttgtaaatattattatctaataaaccactg----tattcatgcaaaaattgat |
11663655 |
T |
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| Q |
110 |
gtatctgattccatgt |
125 |
Q |
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| T |
11663654 |
gtaactgattccatgt |
11663639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 219
Target Start/End: Original strand, 7344763 - 7344887
Alignment:
| Q |
91 |
tattcatgcaaaaattgatgtatctgattccatgttttatttaagactttaaacgcaaattttgagatgtaacaaaatatatatgaagacttactgcaaa |
190 |
Q |
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| T |
7344763 |
tattcttgcaaaaattgatgtaattgattccaagtttaatgtaagactttaaatgcaaattttgagacgtaacaaaatatat----agacttacagcaaa |
7344858 |
T |
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| Q |
191 |
taggtttgcaagaggcacactccacagtg |
219 |
Q |
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| T |
7344859 |
ttggtttgcaagaagcacactccacagtg |
7344887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 11663642 - 11663581
Alignment:
| Q |
157 |
atgtaacaaaatatatatgaagacttactgcaaataggtttgcaagaggcacactccacagt |
218 |
Q |
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| T |
11663642 |
atgtaacaaaatatatatgaagacttactgcaaataggtttgcaagaggcacactccacagt |
11663581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 11655067 - 11655012
Alignment:
| Q |
145 |
gcaaattttgagatgtaacaaaatatatatgaagacttactgcaaataggtttgcaag |
202 |
Q |
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| T |
11655067 |
gcaaattttgagatgtaa--aaatatatataaagacttactacaaattggtttgcaag |
11655012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 11668835 - 11668780
Alignment:
| Q |
145 |
gcaaattttgagatgtaacaaaatatatatgaagacttactgcaaataggtttgcaag |
202 |
Q |
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| T |
11668835 |
gcaaattttgagatgtaa--aaatatatataaagacttactacaaattggtttgcaag |
11668780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 218
Target Start/End: Complemental strand, 11654232 - 11654201
Alignment:
| Q |
187 |
caaataggtttgcaagaggcacactccacagt |
218 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11654232 |
caaataggtttgcaagaggcacactccacagt |
11654201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 218
Target Start/End: Complemental strand, 11667997 - 11667966
Alignment:
| Q |
187 |
caaataggtttgcaagaggcacactccacagt |
218 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
11667997 |
caaataggtttgcaagaggcacactccacagt |
11667966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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