View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_high_9 (Length: 501)
Name: NF6636_high_9
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 17 - 488
Target Start/End: Complemental strand, 40734430 - 40733957
Alignment:
| Q |
17 |
aaaaatatcctttgaagaatgttgtcatataacatgggacaaaaaggttgttttcctcatctgttttcacactgatgcacctaccaccaacctagtatta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40734430 |
aaaaatatcctttgaagaatgttgtcatataacatgggacaaaaaggttgttttcctcatctgttttcacactgatgcacctaccaccaacctagtatta |
40734331 |
T |
|
| Q |
117 |
tattagaagataattgtccttatctgcatgatcaaacagcacactcatatatata--acctatgcacagtgatttcaagcttacaaccattttggtcgat |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40734330 |
tattagaagataattgtccttatctgcatgatcaaacagcacactcatatatatataacctatgcacagtgatttcaagcttacaaccattttggtcgat |
40734231 |
T |
|
| Q |
215 |
aatatcggcaactgaacaattaatttcctagtttcctacgtcgacattctaccttcatcttcatggacaaaaatcctcattcagaaattcaactccctcc |
314 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40734230 |
aatatcggcaactgaacaataaatttcctagtttcctacgtcgacattctaccttcatcttcatggacaaaaatcctcattcagaaattcaactccctcc |
40734131 |
T |
|
| Q |
315 |
tggatttagattccacccttctgatgaagaactcattgttcactatctaagaaacaaagtgacttcatctcctcttcctgcttcattcatagcagaaata |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40734130 |
tggatttagattccacccttctgatgaagaactcattgttcactatctaagaaacaaagtgacttcatctcctcttcctgcttcattcatagcagaaata |
40734031 |
T |
|
| Q |
415 |
aatctttacaagtacaatccgtgggagcttccaagtctgtctttaacaacttcactaattttatgctagtattc |
488 |
Q |
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| T |
40734030 |
aatctttacaagtacaatccgtgggagcttccaagtctgtctttaacaacttcactaattttatgctagtattc |
40733957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 37126386 - 37126429
Alignment:
| Q |
17 |
aaaaatatcctttgaagaatgttgtcatataacatgggacaaaa |
60 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37126386 |
aaaaatatcctttgaagaatgttgtcatataacatgggacaaaa |
37126429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 7e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 27 - 207
Target Start/End: Original strand, 95421 - 95603
Alignment:
| Q |
27 |
tttgaagaatgttgtcatataacatgggacaaaaaggttgttttcctcatctgttttcacactgatgcacctaccaccaacctagtattatattagaaga |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
95421 |
tttgaagaatgttgtcatataacatgggacaaaaaggttgttttcctcatctgttttcacactgatgcacctaccaccaaccgagtattatattagaaga |
95520 |
T |
|
| Q |
127 |
taattgtccttatctgcatgatcaaacagcacactc--atatatataacctatgcacagtgatttcaagcttacaaccatttt |
207 |
Q |
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||||||||||||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||| |||||||| |||||| |
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| T |
95521 |
taattgtccttatttgcatgatcaaacaacacactcatatatatataacctatgcatagtgatttcacgcttacaatcatttt |
95603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 362 - 488
Target Start/End: Original strand, 43326992 - 43327118
Alignment:
| Q |
362 |
taagaaacaaagtgacttcatctcctcttcctgcttcattcatagcagaaataaatctttacaagtacaatccgtgggagcttccaagtctgtctttaac |
461 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
43326992 |
taagaaacaaagtgacttcatctcctcttcctgcttcattcatagcagaaataaatctttacaagtacaatctgtgggagcttccaagtctgtctttaac |
43327091 |
T |
|
| Q |
462 |
aacttcactaattttatgctagtattc |
488 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43327092 |
aacttcactaattttatgctagtattc |
43327118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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