View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_1 (Length: 858)
Name: NF6636_low_1
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 17 - 431
Target Start/End: Original strand, 40234978 - 40235414
Alignment:
| Q |
17 |
agttcctcaccctaagcttaagaaaa-tgagctaattactcatctaacaatgctccaatgttacnnnnnnncaatgcatatacacatcagagaaatgaca |
115 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||| |
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| T |
40234978 |
agttcctcaccctaagcttaagaaaaatgagctaattactcatctaacaatgctccgatgttacaaaaaaacaatgcatatacacatcaaagaaatgaca |
40235077 |
T |
|
| Q |
116 |
aagcacaaaatcgaagtagagtatataaagaactaaaccaattcgttgggtctgtagtgttttgcacagaagtatggatttcctggctgaatatacattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
40235078 |
aagcacaaaatcgaagtagagtatataaagaactaaaccaattcgttgggtctgtagtgttttgcatagaagtaaggatttcctggctgaatatacattt |
40235177 |
T |
|
| Q |
216 |
------------catcatcttcatgttttggagctgcagagctgcttccaatgctccctaaaccacagtcaatcattaggtaaatgtcgactctcaaata |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
40235178 |
caacatcaatttcatcatcttcatgttttggagctgcagagctgcttccaatgctccctaaaccacagtcaatcattaggtaaatgttgactctcgaata |
40235277 |
T |
|
| Q |
304 |
aatatacaactgaaaaaacaaaatagtattttcttcttcttattcttcagtatgatgtcaaaaacatacatgctttgcaggttctacaatgt---tgttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40235278 |
aatatacaactgaaaaaacaaaatagtattttcttcttattattcttcagtatgatgtcaaaaacatacatgctttgcaggttctacaatgttgatgttc |
40235377 |
T |
|
| Q |
401 |
acag------ctgattcccttgtcaactcctttattc |
431 |
Q |
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|||| ||||||||||||||||||||||||||| |
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| T |
40235378 |
acagcttctactgattcccttgtcaactcctttattc |
40235414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 590 - 848
Target Start/End: Original strand, 40235579 - 40235836
Alignment:
| Q |
590 |
ctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaata |
689 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235579 |
ctccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaata |
40235678 |
T |
|
| Q |
690 |
tgtctgaaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgct |
789 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235679 |
tgtctgaaaa-caaggaagtcattgtcctctaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgct |
40235777 |
T |
|
| Q |
790 |
ttgacatgccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
848 |
Q |
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| T |
40235778 |
ttgacatgccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
40235836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 2e-79; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 598 - 848
Target Start/End: Complemental strand, 17461042 - 17460793
Alignment:
| Q |
598 |
tattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaatatgtctgaa |
697 |
Q |
| |
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||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
17461042 |
tattagtattttcctcctcgtccattaccttcatcttttgacacattgatgatagttcaaggattttgaacttgaatacattgttttcaatatgcgtgaa |
17460943 |
T |
|
| Q |
698 |
aaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgctttgacatg |
797 |
Q |
| |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||| |
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| T |
17460942 |
aa-caaggaagtcattgtcctctaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagtttgttgccaatagaacacactttgacatg |
17460844 |
T |
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| Q |
798 |
ccaatctgttcctctatgatcccttaggataaaatatttcaataccctttg |
848 |
Q |
| |
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|||||| ||||||||||||| ||||||||||||| ||||||| |||||| |
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| T |
17460843 |
ccaatcacttcctctatgatctcttaggataaaatccttcaatagcctttg |
17460793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 591 - 832
Target Start/End: Complemental strand, 17454832 - 17454592
Alignment:
| Q |
591 |
tccaacatattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaatat |
690 |
Q |
| |
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|||| |||||||||||||||||| | ||||| ||| |||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
17454832 |
tccatcatattattattttcctcatcttccatcaccggcatcttttcacacattgatgatagttcaagaattttgaatttgaatacattgttttcaatat |
17454733 |
T |
|
| Q |
691 |
gtctgaaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgctt |
790 |
Q |
| |
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| | |||||||||||||||||| ||| |||| ||||||||| ||| ||| ||||| |||||||||||||| | || | ||||||| ||| |||| |
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| T |
17454732 |
gagt-aaaaacaaggaagtcattctccactaaacaattttcttgtctaaatttcttccagccatcatcaaaatagaactcgtcaccaatacgacgcgctt |
17454634 |
T |
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| Q |
791 |
tgacatgccaatctgttcctctatgatcccttaggataaaat |
832 |
Q |
| |
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|||||| ||||||| ||| |||| |||| ||||||||||||| |
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| T |
17454633 |
tgacataccaatctcttcttctacgatctcttaggataaaat |
17454592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 596 - 832
Target Start/End: Original strand, 17394002 - 17394237
Alignment:
| Q |
596 |
catattattattttcctccccatccattaccttcatctttttacacattgatgatagttcataaattttgaacttgaatacattgttttcaatatgtctg |
695 |
Q |
| |
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|||||| |||||||||||| | | |||||||| |||||| |||||| |||||||||||| |||||||||| ||||||| | |||||||||||| | |
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| T |
17394002 |
catattgttattttcctccacgacacttaccttcttcttttcacacatcgatgatagttcaagaattttgaacctgaatacggtattttcaatatgtgt- |
17394100 |
T |
|
| Q |
696 |
aaaaacaaggaagtcattgtcctttaaagaattttcttctctgaatagtttccaaccatcatcaaaataaagcttgcgaccaatagaacgtgctttgaca |
795 |
Q |
| |
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|||||||||||| |||| |||| |||||||||||| ||||| ||| | ||||| ||| | ||||||||||||| |||||| ||| ||||||||| |
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| T |
17394101 |
aaaaacaaggaaatcatcctcctctaaagaattttcctctctaaattgcttccagccaccgtcaaaataaagctcatcgccaataagacgagctttgaca |
17394200 |
T |
|
| Q |
796 |
tgccaatctgttcctctatgatcccttaggataaaat |
832 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||| |
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| T |
17394201 |
tgccaatctcttcctctacgatctcttaggataaaat |
17394237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 17461458 - 17461351
Alignment:
| Q |
173 |
tgttttgcacagaagtatggatttcctggctgaatatacatttca------------tcatcttcatgttttggagctgcagagctgcttccaatgctcc |
260 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||||||||||||| |
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| T |
17461458 |
tgttttgcatagaagtatggatttcctggctgaatatacatttcagcatcaatttcatcatcttcaagatttggagctgcagagctacttccaatgctcc |
17461359 |
T |
|
| Q |
261 |
ctaaacca |
268 |
Q |
| |
|
|||||||| |
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|
| T |
17461358 |
ctaaacca |
17461351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 347 - 397
Target Start/End: Complemental strand, 17455051 - 17455002
Alignment:
| Q |
347 |
tcttcagtatgatgtcaaaaacatacatgctttgcaggttctacaatgttg |
397 |
Q |
| |
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||||| |||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
17455051 |
tcttcggtatgatgtcaaaa-cttacatgctttgcaggttctacaatgttg |
17455002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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