View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6636_low_11 (Length: 467)

Name: NF6636_low_11
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6636_low_11
NF6636_low_11
[»] chr2 (1 HSPs)
chr2 (17-424)||(40819829-40820236)
[»] chr4 (5 HSPs)
chr4 (249-386)||(21173769-21173906)
chr4 (18-157)||(21173502-21173641)
chr4 (18-149)||(53557002-53557133)
chr4 (18-82)||(40254617-40254681)
chr4 (262-308)||(43560557-43560603)
[»] chr7 (3 HSPs)
chr7 (17-139)||(41208793-41208915)
chr7 (265-326)||(41208565-41208626)
chr7 (262-302)||(44678316-44678356)
[»] chr3 (1 HSPs)
chr3 (18-83)||(47847051-47847116)
[»] chr5 (1 HSPs)
chr5 (18-145)||(5113168-5113295)
[»] chr1 (4 HSPs)
chr1 (18-149)||(4685350-4685481)
chr1 (262-304)||(16138929-16138971)
chr1 (262-305)||(16127418-16127461)
chr1 (18-83)||(4612023-4612088)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 424
Target Start/End: Complemental strand, 40820236 - 40819829
Alignment:
Q  17 aatgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatgga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40820236 aatgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccatggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatgga 40820137  T
Q  117 actggtggaaattggatttctcttcctcaaaaagctggtaagaactcttggtatttcatgaaaaatgcttgatcaagttatataattgttatatagtttt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40820136 actggtggaaattggatttctcttcctcaaaaagctggtaagaattcttggtatttcatgaaaaatgcttgatgaagttatataattgttatatagtttt 40820037  T
Q  217 aaacctaacaaatctcatgttatatatatctttttaggtctaaggagatgtggaaaaagttgtagattgagatggcttaactatttaaggccaaacatta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40820036 aaacctaacaaatctcatgttatatatatctttttaggtctaaggagatgtggaaaaagttgtcgattgagatggcttaactatttaaggccaaacatta 40819937  T
Q  317 agcatggagaattttcagatgaagaagacagaatcatttgcactctttatgctaatattggaagcaggtattagttattatactaatatttttatacact 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40819936 agcatggagaattttcagatgaagaagacagaatcatttgcactctttatgctaatattggaagcaggtattagttattatactaatatttttatacact 40819837  T
Q  417 atatatag 424  Q
    ||||||||    
T  40819836 atatatag 40819829  T

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Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 249 - 386
Target Start/End: Original strand, 21173769 - 21173906
Alignment:
Q  249 tttaggtctaaggagatgtggaaaaagttgtagattgagatggcttaactatttaaggccaaacattaagcatggagaattttcagatgaagaagacaga 348  Q
    ||||||||| | ||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| || ||||||||||| |||||||||    
T  21173769 tttaggtctcaagagatgtggaaaaagttgtagattgagatggctaaactatcttaggccaaacattaagcatggtgatttttcagatgaggaagacaga 21173868  T
Q  349 atcatttgcactctttatgctaatattggaagcaggta 386  Q
    || ||||||| ||| |||| ||||||||||||||||||    
T  21173869 ataatttgcagtctctatgttaatattggaagcaggta 21173906  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 21173502 - 21173641
Alignment:
Q  18 atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaa 117  Q
    |||||||||||||| || ||||||||| ||| ||| |||| ||| || |||||||||||||||||| ||||||| ||||| || ||||| || ||||| |    
T  21173502 atgggaagagctccatgttgtgacaaaacaagtgttaagagaggtccatggtcaccagaagaagattcaaagcttaaagattacatagagaaacatggca 21173601  T
Q  118 ctggtggaaattggatttctcttcctcaaaaagctggtaa 157  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  21173602 ctggtggaaattggatttctcttcctcataaagctggtaa 21173641  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 53557002 - 53557133
Alignment:
Q  18 atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaa 117  Q
    ||||| |||||||| ||||||||||| || || |||||||||||||| ||||| || ||||||||| | |  ||||||   || || ||||   ||||||    
T  53557002 atgggtagagctccatgctgtgacaaggctaacgtgaagaaaggaccttggtctcctgaagaagatgctacactcaaatcttacattgaaacaaatggaa 53557101  T
Q  118 ctggtggaaattggatttctcttcctcaaaaa 149  Q
    |||| |||||||||||| ||||||||||||||    
T  53557102 ctggaggaaattggattgctcttcctcaaaaa 53557133  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 40254681 - 40254617
Alignment:
Q  18 atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaaga 82  Q
    ||||| ||||||||||| ||||||||||| ||||| |||| ||| || |||||||| ||||||||    
T  40254681 atggggagagctccttgttgtgacaaagccaatgtcaagagaggtccatggtcacctgaagaaga 40254617  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 43560603 - 43560557
Alignment:
Q  262 agatgtggaaaaagttgtagattgagatggcttaactatttaaggcc 308  Q
    ||||||||||| |||||||||||||||||| | |||||||| |||||    
T  43560603 agatgtggaaagagttgtagattgagatggataaactatttgaggcc 43560557  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 41208915 - 41208793
Alignment:
Q  17 aatgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatgga 116  Q
    |||||||||| ||||||||||||||||||| ||||| |||||||| || ||||| || ||||||||| |||| || || || || ||||| || ||||||    
T  41208915 aatgggaagatctccttgctgtgacaaagctaatgtaaagaaaggtccatggtctcctgaagaagatgcaaaactaaaggaatacatagagaaacatgga 41208816  T
Q  117 actggtggaaattggatttctct 139  Q
    ||||| ||||| |||||| ||||    
T  41208815 actggaggaaactggattactct 41208793  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 41208626 - 41208565
Alignment:
Q  265 tgtggaaaaagttgtagattgagatggcttaactatttaaggccaaacattaagcatggaga 326  Q
    ||||| || ||||||||| | ||||||||||||||| | || ||||||||||||||||||||    
T  41208626 tgtggcaagagttgtagactaagatggcttaactatctcagaccaaacattaagcatggaga 41208565  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 44678356 - 44678316
Alignment:
Q  262 agatgtggaaaaagttgtagattgagatggcttaactattt 302  Q
    |||||||| |||||||||||||| |||||| ||||||||||    
T  44678356 agatgtggtaaaagttgtagattaagatggattaactattt 44678316  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 47847116 - 47847051
Alignment:
Q  18 atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagat 83  Q
    |||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  47847116 atgggaagggcaccttgctgtgacaaagcaaacgtgaagaaaggaccttggtcaccagaagaagat 47847051  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 5113168 - 5113295
Alignment:
Q  18 atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaa 117  Q
    ||||||||||||||||||||||||||||| ||||| || ||||| || |||||||| ||||||||| | || |||||    || |||||| |  |||| |    
T  5113168 atgggaagagctccttgctgtgacaaagccaatgtcaaaaaaggtccatggtcacctgaagaagatgctaaactcaagtcttacatagaacaaaatggta 5113267  T
Q  118 ctggtggaaattggatttctcttcctca 145  Q
    ||||||||||||||||| |||| |||||    
T  5113268 ctggtggaaattggattgctctacctca 5113295  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 4685350 - 4685481
Alignment:
Q  18 atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagatacaaagctcaaagagtatatagaaaagcatggaa 117  Q
    ||||| ||||||||||| |||||||||||||| ||||||||||| || ||||| |||||||||||| | || ||||||   || |||||| | ||||| |    
T  4685350 atgggtagagctccttgttgtgacaaagcaaacgtgaagaaaggtccatggtctccagaagaagattctaaactcaaatcttacatagaacaacatggta 4685449  T
Q  118 ctggtggaaattggatttctcttcctcaaaaa 149  Q
    ||||||| || |||||| |||| || ||||||    
T  4685450 ctggtggtaactggattgctctcccacaaaaa 4685481  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 16138971 - 16138929
Alignment:
Q  262 agatgtggaaaaagttgtagattgagatggcttaactatttaa 304  Q
    ||||||||||| |||||||||||||||||| ||||||||||||    
T  16138971 agatgtggaaagagttgtagattgagatggattaactatttaa 16138929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 16127461 - 16127418
Alignment:
Q  262 agatgtggaaaaagttgtagattgagatggcttaactatttaag 305  Q
    ||||||||||| |||||||||||||||||| |||| ||||||||    
T  16127461 agatgtggaaagagttgtagattgagatggattaattatttaag 16127418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 4612088 - 4612023
Alignment:
Q  18 atgggaagagctccttgctgtgacaaagcaaatgtgaagaaaggaccctggtcaccagaagaagat 83  Q
    ||||||||||||||||| |||||||||| ||| || |||| |||||| ||||| || || ||||||    
T  4612088 atgggaagagctccttgttgtgacaaagaaaaagttaagagaggaccatggtctcctgatgaagat 4612023  T

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