View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_15 (Length: 438)
Name: NF6636_low_15
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 13 - 420
Target Start/End: Complemental strand, 8448977 - 8448570
Alignment:
| Q |
13 |
aaaataattcagtgaaaattaattagatttgaggcatttaaaatgcaggatttgaggcctgaaattccaagggatactcatccaaagttagtcgagttac |
112 |
Q |
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| T |
8448977 |
aaaataattcagtgaaaattaattagatttgaggcatttaaaatgcaggatttgaggcctgaaattccaagggatactcatccaaagttagtcgagttac |
8448878 |
T |
|
| Q |
113 |
ttcaccgctgttggcacaaagatccctccttaaggcccgacttcgcagaaattattaagtttctacatcacattaacaacatggtatggggaggaatata |
212 |
Q |
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| T |
8448877 |
ttcaccgctgttggcacaaagatccctccttaaggcccgacttctcagaaattattaagtttctacatcacattaacaacatggtatggggaggaatata |
8448778 |
T |
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| Q |
213 |
gctagatagacttcttgttaccgttgccnnnnnnnaacttctaaaatgctttgttttcccccttatgtacttgtacagattgcagggaagaaaaagaagg |
312 |
Q |
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| T |
8448777 |
gctagatagacttcttgttaccgttgcctttttttaacttctaaaatgctttgttttcgcccttatgtacttgtacagattgcagggaagaaaaagaagg |
8448678 |
T |
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| Q |
313 |
tgaaggttaaaggcaaagggaatgcatgggcatgcacgatatagtcattggccaaaggccacggcgtggtgaaaagcttgaagacacatgtacatatgtg |
412 |
Q |
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| T |
8448677 |
tgaaggttaaaggcaaagggaatgcatgggcatgcacgatatagtcattggccaaaggccacggcgtggtgaaaagcttgaagacacatgtacatatgtg |
8448578 |
T |
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| Q |
413 |
gaaaaacg |
420 |
Q |
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| T |
8448577 |
gaaaaacg |
8448570 |
T |
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