View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_16 (Length: 429)
Name: NF6636_low_16
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_16 |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 3769 - 4170
Alignment:
| Q |
14 |
agacaccagatcaatctctaaaatgaaaatatcttaaaagaaacacaaattttgcggaacttcaacgagaatgtgagaatgaatttcgattttgttacct |
113 |
Q |
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| T |
3769 |
agacaccagatcaatctctaaaatgaacatatcttaagagaaacacaaattttgcggaacttcaacgagaatgtgagaatgaatttcgattttgttacct |
3868 |
T |
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| Q |
114 |
tcaattttgacggtcttcaattatgaaccggttaaagatgttccatgattaaggatttagggttcttactcttccaagcttcaatgatttggtcttccct |
213 |
Q |
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| T |
3869 |
tcgattttgacggtcttcagttatgaaccggttaaggatgttcgatgattggggatttagggttcttactcttccaagcttcaacgatttggtcttccct |
3968 |
T |
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| Q |
214 |
tgtaactgcaagttcagcgccaattttctcgaggatgtgcaatactgaagagaagaagtggattttgacggttttcttaagaatatcacggaaaacaagt |
313 |
Q |
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| T |
3969 |
tgtaactgcaagttcagcgccggttttcttaaggatgtgcaatattgaagaggagaagttgattttgacggttttcttaagaacatcacggaaaacaagt |
4068 |
T |
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| Q |
314 |
agctggaaccaaggaatataagaccatactcaaggaataacttgttttattttacgtaatattattttttgtatgaatgaaattgtctccaaattaatta |
413 |
Q |
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| T |
4069 |
agctggaatcaaggaatataagaccatactcaaggaataacttgttctattttacgtaatattattttttgtatgaatgaaattgtctccaaattaatta |
4168 |
T |
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| Q |
414 |
at |
415 |
Q |
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| T |
4169 |
at |
4170 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 414
Target Start/End: Complemental strand, 24694106 - 24694047
Alignment:
| Q |
351 |
taacttgttttattttacgtaatattattttttgtatgaatgaaattgtctccaaattaattaa |
414 |
Q |
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| T |
24694106 |
taacttgttttattttacct----tttttttttgtatgaaagaaattgcctccaaattaattaa |
24694047 |
T |
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