View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6636_low_18 (Length: 427)

Name: NF6636_low_18
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6636_low_18
NF6636_low_18
[»] chr8 (3 HSPs)
chr8 (280-420)||(43658909-43659049)
chr8 (287-420)||(38640642-38640775)
chr8 (280-378)||(43654317-43654415)
[»] chr7 (3 HSPs)
chr7 (289-420)||(41455372-41455503)
chr7 (289-420)||(41451688-41451820)
chr7 (289-420)||(32355239-32355370)
[»] scaffold0067 (1 HSPs)
scaffold0067 (289-420)||(7972-8103)
[»] chr2 (5 HSPs)
chr2 (297-420)||(8363301-8363424)
chr2 (288-365)||(8365593-8365670)
chr2 (361-420)||(33357996-33358055)
chr2 (286-420)||(27529086-27529220)
chr2 (295-415)||(40862766-40862886)
[»] chr4 (5 HSPs)
chr4 (280-420)||(6799126-6799266)
chr4 (281-418)||(8986594-8986733)
chr4 (280-418)||(8996066-8996206)
chr4 (289-410)||(42528323-42528436)
chr4 (305-364)||(6806927-6806985)
[»] chr1 (4 HSPs)
chr1 (281-420)||(13016342-13016481)
chr1 (280-420)||(47323268-47323405)
chr1 (280-394)||(47326868-47326982)
chr1 (290-333)||(291364-291407)
[»] chr3 (5 HSPs)
chr3 (289-420)||(28703673-28703804)
chr3 (292-400)||(36611959-36612068)
chr3 (371-420)||(32893797-32893846)
chr3 (280-352)||(32893717-32893789)
chr3 (341-415)||(8878855-8878929)
[»] chr5 (3 HSPs)
chr5 (280-420)||(40254861-40254998)
chr5 (289-413)||(26050014-26050140)
chr5 (289-413)||(26053428-26053554)
[»] chr6 (2 HSPs)
chr6 (289-413)||(27074981-27075107)
chr6 (289-411)||(27078346-27078470)
[»] scaffold0012 (1 HSPs)
scaffold0012 (342-410)||(206191-206259)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 280 - 420
Target Start/End: Complemental strand, 43659049 - 43658909
Alignment:
Q  280 ttgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccg 379  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||    
T  43659049 ttgttgtttgcggataactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcatgacaatgtcactaaactaaggaattatccg 43658950  T
Q  380 cagaattgcgcaactcccccagagtacaacaggttcatctc 420  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  43658949 cagaattgcgcaactcccccagagtacaaccggttcttctc 43658909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 287 - 420
Target Start/End: Original strand, 38640642 - 38640775
Alignment:
Q  287 tcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaatt 386  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||    
T  38640642 tcgcggatgactgaaggatcacaacctgcaaaataataaaataaaacgtaaaacctgaggcgtgactatgtcactgaactaaggaattatccgcagaatt 38640741  T
Q  387 gcgcaactcccccagagtacaacaggttcatctc 420  Q
    | ||||||||||||||||||||||||||||||||    
T  38640742 gtgcaactcccccagagtacaacaggttcatctc 38640775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 280 - 378
Target Start/End: Complemental strand, 43654415 - 43654317
Alignment:
Q  280 ttgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatcc 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||| ||||||||||||    
T  43654415 ttgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacataaaacatgaggcgtgacaatgtcactgaactaaggaattatcc 43654317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 41455372 - 41455503
Alignment:
Q  289 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaattgc 388  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  41455372 gcggatgactgaaggatcataacctacaaaacaagaaaataaaaagtaaaatctgaggcgtgactatgtcactgaactaaggaattatccgcagaattgc 41455471  T
Q  389 gcaactcccccagagtacaacaggttcatctc 420  Q
    |||||||||||| |||||||||||||||||||    
T  41455472 gcaactcccccaaagtacaacaggttcatctc 41455503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 41451688 - 41451820
Alignment:
Q  289 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaattgc 388  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| ||||||  ||||||||||| |||||||| ||| |||||||||||||||||||||     
T  41451688 gcggatgactgaaggatcataacctgcaaaacaagaaaataaaaagtaaaacatgaggcgtgactatgtcactaaactaaggaattatccgcagaattgt 41451787  T
Q  389 gcaact-cccccagagtacaacaggttcatctc 420  Q
    |||||| ||||||||||||||||||||||||||    
T  41451788 gcaactccccccagagtacaacaggttcatctc 41451820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 32355370 - 32355239
Alignment:
Q  289 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaattgc 388  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||| ||| |||||| ||||||||| |    
T  32355370 gcggatgactgaaggatcataacctgcaaaacaagaaaataaaaagtaaaacctgaggcgtgacaatatcactgaactaagaaattattcgcagaattac 32355271  T
Q  389 gcaactcccccagagtacaacaggttcatctc 420  Q
    |||||| | |||||||||||||||||||||||    
T  32355270 gcaacttctccagagtacaacaggttcatctc 32355239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 289 - 420
Target Start/End: Complemental strand, 8103 - 7972
Alignment:
Q  289 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaattgc 388  Q
    ||||||||| ||||||||| |||||||||||||||||||| ||| |||||| |||||| ||||| |||||||||||| ||||||||||||||| ||||||    
T  8103 gcggatgacggaaggatcataacctgcaaaacaagaaaataaaaagtaaaacctgaggtgtgactatgtcactgaactaaggaattatccgcaaaattgc 8004  T
Q  389 gcaactcccccagagtacaacaggttcatctc 420  Q
    ||||||||||||||||||||||||||||||||    
T  8003 gcaactcccccagagtacaacaggttcatctc 7972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 297 - 420
Target Start/End: Complemental strand, 8363424 - 8363301
Alignment:
Q  297 ctgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaattgcgcaactcc 396  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  8363424 ctgaaggatcacaacctgcaaaacaagaaaatgaaaggtaaaacctgatgcgtgactatgtcactgaactaaggaattatccgcagaattgcgcaactcc 8363325  T
Q  397 cccagagtacaacaggttcatctc 420  Q
     ||||||||||||||| |||||||    
T  8363324 tccagagtacaacagggtcatctc 8363301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 288 - 365
Target Start/End: Complemental strand, 8365670 - 8365593
Alignment:
Q  288 cgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaac 365  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||  ||||| |||||||||||| ||||||||||||    
T  8365670 cgcggatgactgaaggatcacaacctgaaaaacaagaacatgaaaaataaaacctgaggcgtgactatgtcactgaac 8365593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 361 - 420
Target Start/End: Complemental strand, 33358055 - 33357996
Alignment:
Q  361 tgaacaaaggaattatccgcagaattgcgcaactcccccagagtacaacaggttcatctc 420  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  33358055 tgaactaaggaattatccgtagaattgcgcaactcctccagagtacaacaggttcatctc 33357996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 286 - 420
Target Start/End: Complemental strand, 27529220 - 27529086
Alignment:
Q  286 ttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaat 385  Q
    |||||||||||| ||| |||||||| || |||||||| |||||| ||  | |||  ||||||||||| | ||||||  || ||||||||||||||| |||    
T  27529220 ttcgcggatgaccgaatgatcacaaactacaaaacaataaaatgtaaactgaaaaatgaggcgtgactacgtcactagactaaggaattatccgcataat 27529121  T
Q  386 tgcgcaactcccccagagtacaacaggttcatctc 420  Q
    ||| |||||| |||| | ||||| |||||||||||    
T  27529120 tgcacaactcacccataatacaataggttcatctc 27529086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 415
Target Start/End: Original strand, 40862766 - 40862886
Alignment:
Q  295 gactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaattgcgcaact 394  Q
    ||||||| |||||||||||  ||||||| |||||| || ||||||| ||||| |||||    ||||||||| ||| |||||||||||  ||| | ||| |    
T  40862766 gactgaaagatcacaacctataaaacaataaaatgtaaagtaaaatatgaggtgtgacgtaatcactgaactaagtaattatccgcatgattacacaatt 40862865  T
Q  395 cccccagagtacaacaggttc 415  Q
    || ||| | ||||||||||||    
T  40862866 cctccaaaatacaacaggttc 40862886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 280 - 420
Target Start/End: Complemental strand, 6799266 - 6799126
Alignment:
Q  280 ttgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccg 379  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| ||| |||||| ||| |||||||| |||||||||||| |||||||||||||    
T  6799266 ttgttgtttgcggatgactgaaggatcacaacctgcaaaataagaaaataaaaagtaaaacctgtggcgtgactatgtcactgaactaaggaattatccg 6799167  T
Q  380 cagaattgcgcaactcccccagagtacaacaggttcatctc 420  Q
    ||||||||||| ||||||||| ||||| |||||||| ||||    
T  6799166 cagaattgcgcgactcccccaaagtactacaggttcttctc 6799126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 281 - 418
Target Start/End: Original strand, 8986594 - 8986733
Alignment:
Q  281 tgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaa--tgtcactgaacaaaggaattatcc 378  Q
    |||||| || ||||||| ||||||||||| ||||||||||||  |||| ||||||||||||||||||||||| |  |||||||| || ||||||||||||    
T  8986594 tgttgtacgtggatgaccgaaggatcacaccctgcaaaacaatgaaataaaacgtaaaatctgaggcgtgactacgtgtcactggactaaggaattatcc 8986693  T
Q  379 gcagaattgcgcaactcccccagagtacaacaggttcatc 418  Q
    | |||||||||||||||||||||  ||||| |||||||||    
T  8986694 gtagaattgcgcaactcccccagcatacaaaaggttcatc 8986733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 280 - 418
Target Start/End: Original strand, 8996066 - 8996206
Alignment:
Q  280 ttgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaa--tgtcactgaacaaaggaattatc 377  Q
    |||||||  ||||||||||||||||||||| ||||||||||||  |||| ||||||||||||| ||| ||||  |  |||||||| || |||||||||||    
T  8996066 ttgttgtatgcggatgactgaaggatcacatcctgcaaaacaatgaaataaaacgtaaaatctaaggtgtgattacgtgtcactggactaaggaattatc 8996165  T
Q  378 cgcagaattgcgcaactcccccagagtacaacaggttcatc 418  Q
    ||||||||||| ||||||||||| | |||||||||||||||    
T  8996166 cgcagaattgcacaactcccccaaaatacaacaggttcatc 8996206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 410
Target Start/End: Original strand, 42528323 - 42528436
Alignment:
Q  289 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaattgc 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||         ||||||||||| ||||||||||    
T  42528323 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaacttgaggcgtgactatgt--------taaggaattatctgcagaattgc 42528414  T
Q  389 gcaactcccccagagtacaaca 410  Q
    |||||||||||| | |||||||    
T  42528415 gcaactcccccaaaatacaaca 42528436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 364
Target Start/End: Complemental strand, 6806985 - 6806927
Alignment:
Q  305 tcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaa 364  Q
    ||||||||| |||||||||||||| ||| |||||| |||||||||||| |||||||||||    
T  6806985 tcacaacctacaaaacaagaaaataaaa-gtaaaacctgaggcgtgactatgtcactgaa 6806927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 281 - 420
Target Start/End: Original strand, 13016342 - 13016481
Alignment:
Q  281 tgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgc 380  Q
    |||| ||||||||||||| |||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  13016342 tgttattcgcggatgactaaaggatcataacctgcaaaaacagaaaataaaacgtaaaatctgaggcgtgacaatgtcactgaactaaggaattatctgc 13016441  T
Q  381 agaattgcgcaactcccccagagtacaacaggttcatctc 420  Q
    ||||||||| |||| ||||| |||||||||||||| ||||    
T  13016442 agaattgcgtaacttccccatagtacaacaggttcttctc 13016481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 280 - 420
Target Start/End: Complemental strand, 47323405 - 47323268
Alignment:
Q  280 ttgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccg 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||   ||||||| ||||||| |||| |||||||||||||    
T  47323405 ttgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaataaaaagtaaaacct---gcgtgactatgtcaccgaactaaggaattatccg 47323309  T
Q  380 cagaattgcgcaactcccccagagtacaacaggttcatctc 420  Q
    || |||||||||| ||||| ||||||||||| |||| ||||    
T  47323308 caaaattgcgcaattccccaagagtacaacatgttcttctc 47323268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 280 - 394
Target Start/End: Complemental strand, 47326982 - 47326868
Alignment:
Q  280 ttgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccg 379  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| | ||  ||||||| ||||||||||| ||||||| |||| |||||| ||||||    
T  47326982 ttgttgttcgcggatgacagaaggatcacaacctgcaaaacaagaaagtaaagagtaaaatttgaggcgtgactatgtcacagaactaaggaaatatccg 47326883  T
Q  380 cagaattgcgcaact 394  Q
    |||||||||||||||    
T  47326882 cagaattgcgcaact 47326868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 291407 - 291364
Alignment:
Q  290 cggatgactgaaggatcacaacctgcaaaacaagaaaatgaaac 333  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||    
T  291407 cggatgactgaaggatcacaacctgcaaaacgataaaataaaac 291364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 289 - 420
Target Start/End: Original strand, 28703673 - 28703804
Alignment:
Q  289 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaattgc 388  Q
    |||||||| |||||||||| |||||||||||||||||||| ||| ||||||| |||||| |||  |||||||||||| ||||||||||||||||||||||    
T  28703673 gcggatgagtgaaggatcataacctgcaaaacaagaaaataaaaagtaaaatttgaggcatgattatgtcactgaactaaggaattatccgcagaattgc 28703772  T
Q  389 gcaactcccccagagtacaacaggttcatctc 420  Q
    |||||||||||| ||||||||| |||||||||    
T  28703773 gcaactcccccaaagtacaacaagttcatctc 28703804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 400
Target Start/End: Original strand, 36611959 - 36612068
Alignment:
Q  292 gatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgac-aatgtcactgaacaaaggaattatccgcagaattgcgc 390  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |  ||||||| || ||| |||||| | |||||||||||    
T  36611959 gatgactgaaggatcacaacctgcaaaacaataaaatgaaacgtaaaatctaaggcgtgactaccgtcactggactaagaaattattcacagaattgcgc 36612058  T
Q  391 aactccccca 400  Q
    ||||||||||    
T  36612059 aactccccca 36612068  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 371 - 420
Target Start/End: Original strand, 32893797 - 32893846
Alignment:
Q  371 aattatccgcagaattgcgcaactcccccagagtacaacaggttcatctc 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32893797 aattatccgcagaattgcgcaactcccccagagtacaacaggttcatctc 32893846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 280 - 352
Target Start/End: Complemental strand, 32893789 - 32893717
Alignment:
Q  280 ttgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgac 352  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| | | |||||| ||||||||||||    
T  32893789 ttgttgtttgcggatgactgaaggatcataacctgcaaaacaagaaaataacaagtaaaacctgaggcgtgac 32893717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 341 - 415
Target Start/End: Original strand, 8878855 - 8878929
Alignment:
Q  341 ctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaattgcgcaactcccccagagtacaacaggttc 415  Q
    |||||||||||| | |||||||||| ||  ||||||| |||  ||||||||| ||||||||| ||||||||||||    
T  8878855 ctgaggcgtgactacgtcactgaactaaacaattatcagcaagattgcgcaattcccccagaatacaacaggttc 8878929  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 280 - 420
Target Start/End: Complemental strand, 40254998 - 40254861
Alignment:
Q  280 ttgttgttcgcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacgtaaaatctgaggcgtgacaatgtcactgaacaaaggaattatccg 379  Q
    ||||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||    ||||||||| |||||||||||| ||||||||||||     
T  40254998 ttgttgttcgcggatgactgaaggatcacaacctgtaaaataataaaataaaacgtaaaac---aggcgtgactatgtcactgaactaaggaattatcca 40254902  T
Q  380 cagaattgcgcaactcccccagagtacaacaggttcatctc 420  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  40254901 cagaattgcgcaactcctccatagtacaacaggttcatctc 40254861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 289 - 413
Target Start/End: Complemental strand, 26050140 - 26050014
Alignment:
Q  289 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacg-taaaatc-tgaggcgtgacaatgtcactgaacaaaggaattatccgcagaatt 386  Q
    |||||||||||||| ||||||||||||||||||  ||| | ||| | ||||| | ||||||||||| | ||||||| || ||||||||||||||||||||    
T  26050140 gcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgcagaatt 26050041  T
Q  387 gcgcaactcccccagagtacaacaggt 413  Q
    |||||||||||||||| ||||||||||    
T  26050040 gcgcaactcccccagaatacaacaggt 26050014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 289 - 413
Target Start/End: Complemental strand, 26053554 - 26053428
Alignment:
Q  289 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacg-taaaatc-tgaggcgtgacaatgtcactgaacaaaggaattatccgcagaatt 386  Q
    |||||||||||||| ||||||||||||||||||  ||| | ||| | ||||| | ||||||||||| | ||||||| || ||||||||||||| ||||||    
T  26053554 gcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgtagaatt 26053455  T
Q  387 gcgcaactcccccagagtacaacaggt 413  Q
    |||||||||||||||| ||||||||||    
T  26053454 gcgcaactcccccagaatacaacaggt 26053428  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 289 - 413
Target Start/End: Complemental strand, 27075107 - 27074981
Alignment:
Q  289 gcggatgactgaaggatcacaacctgcaaaacaagaaaat-gaaacgtaaaa-tctgaggcgtgacaatgtcactgaacaaaggaattatccgcagaatt 386  Q
    |||||||||||||| ||||||||||||||||||| ||| |  ||| ||||||  |||||||||||| | ||||||| || ||||||||||||||||||||    
T  27075107 gcggatgactgaagtatcacaacctgcaaaacaataaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgcagaatt 27075008  T
Q  387 gcgcaactcccccagagtacaacaggt 413  Q
    |||||||||||||||| ||||||||||    
T  27075007 gcgcaactcccccagaatacaacaggt 27074981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 289 - 411
Target Start/End: Complemental strand, 27078470 - 27078346
Alignment:
Q  289 gcggatgactgaaggatcacaacctgcaaaacaagaaaatgaaacg-taaaatc-tgaggcgtgacaatgtcactgaacaaaggaattatccgcagaatt 386  Q
    |||||||||||||| ||||||||||||||||||  ||| | ||| | ||||| | ||||||||||| | ||||||| || ||||||||||||||||||||    
T  27078470 gcggatgactgaagtatcacaacctgcaaaacagtaaactaaaaaggtaaaaccctgaggcgtgactaagtcactggactaaggaattatccgcagaatt 27078371  T
Q  387 gcgcaactcccccagagtacaacag 411  Q
    |||||||||||||||| ||||||||    
T  27078370 gcgcaactcccccagaatacaacag 27078346  T

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Target: scaffold0012 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 206259 - 206191
Alignment:
Q  342 tgaggcgtgacaatgtcactgaacaaaggaattatccgcagaattgcgcaactcccccagagtacaaca 410  Q
    ||||||||||| | |||| || || |||||||||||| || ||| |||||||||||||||| |||||||    
T  206259 tgaggcgtgactaggtcattggactaaggaattatccacataatagcgcaactcccccagaatacaaca 206191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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