View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_21 (Length: 417)
Name: NF6636_low_21
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 32266864 - 32267100
Alignment:
| Q |
1 |
tcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctttcccacattctt |
100 |
Q |
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| T |
32266864 |
tcctccatcatagccttgttgatctttttctctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctttcccacattctt |
32266963 |
T |
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| Q |
101 |
tgcagaatttgatcatttcattttgttccaatgtggttnnnnnnnnnnnnnnnnnntgatgattataatgatgatgatgagaatgcacaaacctcattgt |
200 |
Q |
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| T |
32266964 |
tgcagaatttgatcatttcattttgttccaatgtggttgcagcagcagtagcagcatgatgattataatgatgatgatgagaatgcacaaacctcattgt |
32267063 |
T |
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| Q |
201 |
tttcttgggattttctcttagaccataaatgaggttt |
237 |
Q |
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| T |
32267064 |
tttcttgggattttctcttagaccataaatgaggttt |
32267100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 310 - 407
Target Start/End: Original strand, 32267170 - 32267267
Alignment:
| Q |
310 |
ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcctatg |
407 |
Q |
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| T |
32267170 |
ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcctatg |
32267267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 19301397 - 19301476
Alignment:
| Q |
31 |
tctttctcagaatgagaagccatgtgtccacaaagtgctttcaatgaaggaaaacctttcccacattctttgcagaattt |
110 |
Q |
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| T |
19301397 |
tctttctcagagtgacaagccatgtgaccacacagtgctttcaatgatggaaaaccttttccacattctttgcagaattt |
19301476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 19301508 - 19301560
Alignment:
| Q |
184 |
tgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtt |
236 |
Q |
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| T |
19301508 |
tgcacaaacctagttgttttcttgggattctctctaagaccataaataaggtt |
19301560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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