View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6636_low_22 (Length: 399)
Name: NF6636_low_22
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 103 - 382
Target Start/End: Original strand, 42615768 - 42616047
Alignment:
| Q |
103 |
ttattattaattaaagtgatactgacaactattctagatgaaatttgaactcggctgcttgaagttttaatatcaaactcttatcatcgaattaacaccc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42615768 |
ttattattaattaaagtgatactgacaactattctagatgaaatttgaactcggctgcttgaagttttaatatcaaactcttatcatcgaattaacaccc |
42615867 |
T |
|
| Q |
203 |
gataaacgaaaacaacacattcaatggttgaaaacttacataaacaaaaaagaagtaacataccaacaagaccaaacatagatgtaccatatcctcatat |
302 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42615868 |
gataaacgaaaacaacacattcaatagttgaaaacttacataaacaaaaaagaagtaacataccaacaagaccaaacatagatgtaccatatcctcatat |
42615967 |
T |
|
| Q |
303 |
gcaaatagtggcctaaaattgacaagcacagataagcaattacctaaccatttattctccaaaatactcccttccaattg |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42615968 |
gcaaatagtggcctaaaattgacaagcacagataagcaattacctaaccatttattctccaaaatactcccttccaattg |
42616047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 42615666 - 42615737
Alignment:
| Q |
1 |
ccaattccttttgtctcttacccacatcatgaccctccccttccaagctccaatcacaggaacaatatattt |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42615666 |
ccaattccttttgtctcttacccacatcatgaccctccccttccaagctccaatcacaggaacaatatattt |
42615737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 10208608 - 10208553
Alignment:
| Q |
315 |
ctaaaattgacaagcacagataagcaattacctaaccatttattctccaaaatact |
370 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10208608 |
ctaaaattgacatgcacgtataagcaattacctaaccatttattctccaaaatact |
10208553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University