View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_25 (Length: 386)
Name: NF6636_low_25
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 27763068 - 27762862
Alignment:
| Q |
1 |
tgatgatgaaaaatgaaatattagaaaaaaggatatataaaccacgtgagaaagtgcagaaaaggtgtagtgcttttcagaaatcagaaaggtgtactta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27763068 |
tgatgatgaaaaatgaaatattagaaaaaaggatatataaaccacgtgagaaggtgcagaaaaggtgtagtgcttttcagaaatcagaaaggtgtactta |
27762969 |
T |
|
| Q |
101 |
gtaaaacgaaaacacactctcnnnnnnnccttacaccttctttgatatgctttggtttcttcccttcctaatttcgtagatgctgtcacacccttatgcc |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27762968 |
gtaaaacgaaaacacactctctttttttccttacaccttctttgatatgctttggtttcttcccttcctaatttcgtagatgctgtcacacccttatgcc |
27762869 |
T |
|
| Q |
201 |
aatgaac |
207 |
Q |
| |
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||||||| |
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| T |
27762868 |
aatgaac |
27762862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 246 - 374
Target Start/End: Complemental strand, 27762812 - 27762684
Alignment:
| Q |
246 |
gtggacccaaatctatatagaaataagcataaaaacaacataacaagctgtgtaatagctacacctcacattcaaatctgtgttggagtttgtaggaaat |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27762812 |
gtggacccaaatctatatagaaataagcataaaaacaacataacaagctgtgtaatagctacacctcacattcaaatctgtgttggagtttgtaggaaat |
27762713 |
T |
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| Q |
346 |
ataatcaaatcaaatggctcttgtaccta |
374 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
27762712 |
ataatcaaatcaaatggctcttgtaccta |
27762684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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