View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_26 (Length: 383)
Name: NF6636_low_26
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 143 - 213
Target Start/End: Original strand, 21305019 - 21305092
Alignment:
| Q |
143 |
aaatattagatttctaat--ctctcaatccaattctagaagcctttgaa-gatgttgaaccaatctactcccaa |
213 |
Q |
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| T |
21305019 |
aaatattatatttctaatatctctcaatccatttttagaagccttggaaagatgttgaaccaatctactcccaa |
21305092 |
T |
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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 21275444 - 21275484
Alignment:
| Q |
184 |
tttgaagatgttgaaccaatctactcccaactacacttcct |
224 |
Q |
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| T |
21275444 |
tttgaagatgtcgaaccaatctactcccaactacacttcct |
21275484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 359
Target Start/End: Original strand, 21305091 - 21305211
Alignment:
| Q |
232 |
aaaattggttatgtgactaatattgttctctactgtgtata-ggattctatgtggttgttggttggactgagttttttccgagttgaatcgaactcgtct |
330 |
Q |
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| T |
21305091 |
aaaattggttatgcgactaaaattgttgtctacggtgtatttggattctaagt---tgttggtaggactgaaattttttcga-----atcgaactcgtct |
21305182 |
T |
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| Q |
331 |
cggttgcactcaacttattaagaattagt |
359 |
Q |
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| T |
21305183 |
cggttgaactcgacttgttaagaattagt |
21305211 |
T |
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