View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6636_low_28 (Length: 378)
Name: NF6636_low_28
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 74 - 361
Target Start/End: Complemental strand, 4369238 - 4368951
Alignment:
| Q |
74 |
tgttgataatatcatttctgcatgattttgcatatattaatatgaattcaatatacaatttgtatgattttctttgatgttttgtttgttttctgattat |
173 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4369238 |
tgttgatagtatcatttctgcatgattttgcatatattaatatgaattcaatatacaatttgcatgattttctttgatgttttgtttgttttctgattat |
4369139 |
T |
|
| Q |
174 |
gtttacgaatttgcagaaacttataaacacgcctttaatttgccggtagcgaagataacaagtaaacaggaaatcaattgttctactatggaagatgtca |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4369138 |
gtttacgaatttgcagaaacttataaacacgcctttaatttgtgggtagcaaagataacaagtaaacaggaaatcaattgttctactatggaagatgtca |
4369039 |
T |
|
| Q |
274 |
atataaaagctggtgtgaatgaagaagatggtttatatacagaagatggaacaattgacattcacaaaaaccctgccaacaagaaaaa |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4369038 |
atataaaagctggtgtgaatgaagaagatggtttatatacagaagatggaacaattgacattcacaaaaaccctgccaacaagaaaaa |
4368951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4369351 - 4369274
Alignment:
| Q |
1 |
tttaattatttttctttatatatggtccagtaatattgtgatatctgtcaccttgatgttaatctgatatatttgttg |
78 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4369351 |
tttaattatttttctttatgtatggtccagaaatattgtgatatttgtcaccttgatgttaatctgatatatttgttg |
4369274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University