View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_29 (Length: 374)
Name: NF6636_low_29
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 47987665 - 47987959
Alignment:
| Q |
18 |
ctatcactatcattgtattttccgttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttacaatcagggtttcgacgtgcatt |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47987665 |
ctatcactatcattgtattttcctttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttacaattagggtttcgacgtgcatt |
47987764 |
T |
|
| Q |
118 |
gataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttcttacatgctcactctgaatgtat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47987765 |
gataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttcttacatgctcactctgaatgtat |
47987864 |
T |
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| Q |
218 |
cgtgcgtaacataaacttattgatactgtcgaatgaataccaatttggatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47987865 |
cgtgcgtaacataaacttattgatactgtcgaatgaataccaatttggatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggag |
47987959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 47996952 - 47997246
Alignment:
| Q |
18 |
ctatcactatcattgtattttccgttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttacaatcagggtttcgacgtgcatt |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47996952 |
ctatcactatcattgtattttcctttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttacaattagggtttcgacgtgcatt |
47997051 |
T |
|
| Q |
118 |
gataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttcttacatgctcactctgaatgtat |
217 |
Q |
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| T |
47997052 |
gataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttcttacatgctcactctgaatgtat |
47997151 |
T |
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| Q |
218 |
cgtgcgtaacataaacttattgatactgtcgaatgaataccaatttggatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47997152 |
cgtgcgtaacataaacttattgatactgtcgaatgaataccaatttggatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggag |
47997246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 48006239 - 48006533
Alignment:
| Q |
18 |
ctatcactatcattgtattttccgttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttacaatcagggtttcgacgtgcatt |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48006239 |
ctatcactatcattgtattttcctttatttattgcgtattgtttcaaattcagtgcagaacgttcaaattgcacttacaattagggtttcgacgtgcatt |
48006338 |
T |
|
| Q |
118 |
gataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttcttacatgctcactctgaatgtat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48006339 |
gataaaattcggatacgaattaaattcgaaaaccatgcacatttgtcgttattttcttactttttgcattagtgttcttacatgctcactctgaatgtat |
48006438 |
T |
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| Q |
218 |
cgtgcgtaacataaacttattgatactgtcgaatgaataccaatttggatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggag |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48006439 |
cgtgcgtaacataaacttattgatactgtcgaatgaataccaatttggatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggag |
48006533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 47997246 - 47997346
Alignment:
| Q |
265 |
gatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggagggagataacattctcgatgttatatacggcgatgataatttagatgatgatg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47997246 |
gatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggagggagataacattctcgatgttatatacggcgatgataatttagatgatgatg |
47997345 |
T |
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| Q |
365 |
t |
365 |
Q |
| |
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| |
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| T |
47997346 |
t |
47997346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 47987959 - 47988059
Alignment:
| Q |
265 |
gatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggagggagataacattctcgatgttatatacggcgatgataatttagatgatgatg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47987959 |
gatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggagggagataacattctcgatgttatatacgacgatgataatttagatgatgatg |
47988058 |
T |
|
| Q |
365 |
t |
365 |
Q |
| |
|
| |
|
|
| T |
47988059 |
t |
47988059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 265 - 365
Target Start/End: Original strand, 48006533 - 48006633
Alignment:
| Q |
265 |
gatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggagggagataacattctcgatgttatatacggcgatgataatttagatgatgatg |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
48006533 |
gatttcccttgatgcaggtttggtgtttgaccgtttgtcatggaggagggagataacattctcgatgttatatacgacgatgataatttagatgatgatg |
48006632 |
T |
|
| Q |
365 |
t |
365 |
Q |
| |
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| |
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| T |
48006633 |
t |
48006633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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