View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6636_low_3 (Length: 711)
Name: NF6636_low_3
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 626; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 18 - 705
Target Start/End: Original strand, 49203201 - 49203879
Alignment:
| Q |
18 |
cacttcagtcctcactttaattccctccttgtcaccctctccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203201 |
cacttcagtcctcactttaattccctccttgtcaccctatccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
49203300 |
T |
|
| Q |
118 |
gtttttccttgcctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
217 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203301 |
gtttttccttgcctcaatttcgaa----tttcacctttcatcttagcctctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
49203396 |
T |
|
| Q |
218 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203397 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
49203496 |
T |
|
| Q |
318 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
417 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203497 |
gtcgaata-ttcttgtttaaactgtttcgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
49203595 |
T |
|
| Q |
418 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgttaacacgaggaccaatagtga |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
49203596 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgtcaacacgaggaccaatagtga |
49203695 |
T |
|
| Q |
518 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203696 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
49203795 |
T |
|
| Q |
618 |
gggaataatccatgctttctttgcaagttttatgtctttgatgagaataaatacctgttatcacaaggtattctgatgcctttgctac |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203796 |
gggaataatccatgctttctttgcaagttttatgtctttgatgag----aatacctgttatcacaaggtattctgatgcctttgctac |
49203879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 18 - 696
Target Start/End: Original strand, 49188359 - 49189033
Alignment:
| Q |
18 |
cacttcagtcctcactttaattccctccttgtcaccctctccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||||||| || |||||||||||||| || ||||||||||||||| |
|
|
| T |
49188359 |
cacttcagtcctcactttaattccctccttctcaccctctccagctctctgcatcgcaataaccttcgtctctgcatcaatttttgctgcattctgcagc |
49188458 |
T |
|
| Q |
118 |
gtttttccttgcctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
217 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
49188459 |
gtttgtccttccctcaattttgaaccaatttcacctttcatcttagcttctgacacgtcaaccctagcttgattcttggcttccatctgcgtcttttgac |
49188558 |
T |
|
| Q |
218 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
317 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49188559 |
ccaaatatgagaaatactcatgaccgggcacatccaccaattgcttaacattcgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
49188658 |
T |
|
| Q |
318 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
417 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||||||||| |
|
|
| T |
49188659 |
gtcaaatacttcttgtttaaactgtttcgttcctctgaaaacctcctccatggtcatggaagcagcgaggacacgtgtctccccttcgatgattccttga |
49188758 |
T |
|
| Q |
418 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgttaacacgaggaccaatagtga |
517 |
Q |
| |
|
|| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
49188759 |
acgagttcattaacgtgattggagtgtcgatcatgaggtgaaataagtttggcgtatttgagaaggctttcctgatcgtcaacacgaggaccaattgtga |
49188858 |
T |
|
| Q |
518 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
617 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
49188859 |
agacggcggggagaacaaaaggaagtttctcggcactcatagcttgaacttcaaaggtgtagtttaccggtgagaggtccaagacagtgcaggattgacc |
49188958 |
T |
|
| Q |
618 |
gggaataatccatgctttctttgcaagttttatgtctttgatgagaataaatacctgttatcacaaggtattctgatgc |
696 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49188959 |
gggaaaaatccatgctttctttttgagtttgatgtctttgatga----aaatacctgttatcacaaggtattctgatgc |
49189033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 653
Target Start/End: Original strand, 49213212 - 49213847
Alignment:
| Q |
18 |
cacttcagtcctcactttaattccctccttgtcaccctctccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
117 |
Q |
| |
|
||||||||| |||||||||||||||| ||| |||| ||||| | ||| |||| || ||||| || |||||||||||||| || ||||||||||||||| |
|
|
| T |
49213212 |
cacttcagttctcactttaattccctgcttctcactttctcctgccctttgcatcgctataaccttcgtctctgcatcaatttttgctgcattctgcagc |
49213311 |
T |
|
| Q |
118 |
gtttttccttgcctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
217 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||| | |
|
|
| T |
49213312 |
gtttgtcctaccctcaatttcgaaccaatttcacctttcatcttagcttctgccacatcaaccttagcttgattcgctgcttccatctgcgtcttttgtc |
49213411 |
T |
|
| Q |
218 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49213412 |
ccagatatgagaaatactcgtgaccaggcacatccaccaattgcttaacattcgcattataaatcaataacccgaattgattcaactcaagttgaacttt |
49213511 |
T |
|
| Q |
318 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
417 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| || |||||||||||||||||| |
|
|
| T |
49213512 |
atcaaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatagtcatggaggcagctaggacacgtgtctcaccttcaatgattccttga |
49213611 |
T |
|
| Q |
418 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgttaacacgaggaccaatagtga |
517 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
49213612 |
acaagttcattaacatgattggagtgtctatcatggggtgaaataagtttggcgtatttgaggaggctttcctgatcgtcaacacgaggaccgatagtga |
49213711 |
T |
|
| Q |
518 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
617 |
Q |
| |
|
| || ||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||| ||||| | ||| || ||||| |
|
|
| T |
49213712 |
agacagcagggagaacgaaagggagtttttcggcactcatggcttgaacttcgaaggtatagttcaccggtgaaaggtcgaagaccgtgcatgattgacc |
49213811 |
T |
|
| Q |
618 |
gggaataatccatgctttctttgcaagttttatgtc |
653 |
Q |
| |
|
||| | |||||||||||||||| ||||||||||| |
|
|
| T |
49213812 |
ggggaaaatccatgctttcttttggagttttatgtc |
49213847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 649
Target Start/End: Original strand, 49208372 - 49209003
Alignment:
| Q |
18 |
cacttcagtcctcactttaattccctccttgtcaccctctccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||| | |||||||| |||||||| || |||||||||||||| |||||||| ||||| | | |
|
|
| T |
49208372 |
cacttcagtcctcactttaattccctgtttctcaccttctccagccctctgcatcgcaataaccttcgtctctgcatcaattttcgctgcgttctggatc |
49208471 |
T |
|
| Q |
118 |
gtttttccttgcctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
217 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| | |
|
|
| T |
49208472 |
gtttgtccttccctcaattttgaaccaatttcacctttcatcttggcttctgccacgtcaaccctagcttgatttgctgcttccatttgcgtcttttgtc |
49208571 |
T |
|
| Q |
218 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
317 |
Q |
| |
|
||| |||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||| ||||||||||||| ||||| |||||||||||||| |
|
|
| T |
49208572 |
ccaaatatgagaaatattcatgacccggcacatccaccaattgcttaacattggcgttgtaaatccataatccgaattggttcaattcaagttgaacttt |
49208671 |
T |
|
| Q |
318 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
417 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||| |||||| | || |||||||| || ||||| |||||||||||| |
|
|
| T |
49208672 |
gtcgaatacttcttgtttaaattcttttgttcctctgaaaacctcttccatcgtcattgaagcaacgaggacacgtgtctcgccttcgatgattccttga |
49208771 |
T |
|
| Q |
418 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgttaacacgaggaccaatagtga |
517 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||| || ||||| |||||||| |||||||| |||||||| | ||||| |||||||||||| || |||| |
|
|
| T |
49208772 |
acaagttcattaacgtgattggagagtttatcatgaggggaaattagtttggcatatttgaggaggctttcgtaatcgtcaacacgaggaccgattgtga |
49208871 |
T |
|
| Q |
518 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
617 |
Q |
| |
|
| ||||||||||| || ||||| ||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| ||||| | |||||| ||||| |
|
|
| T |
49208872 |
agacggcagggaggacgaaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacc |
49208971 |
T |
|
| Q |
618 |
gggaataatccatgctttctttgcaagtttta |
649 |
Q |
| |
|
|||| |||||||||||||||| |||| |||| |
|
|
| T |
49208972 |
tggaaaaatccatgctttcttttcaagcttta |
49209003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 659
Target Start/End: Original strand, 49192095 - 49192736
Alignment:
| Q |
18 |
cacttcagtcctcactttaattccctccttgtcaccctctccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| | |||||||| ||||||| ||||||||||||||||| || |||||||| || || |
|
|
| T |
49192095 |
cacttcagtcctcactttaattccctccttgtcgccctctccagccctctgcatcgcaataatctttgtctctgcatcaatttttgctgcattttgtagt |
49192194 |
T |
|
| Q |
118 |
gtttttccttgcctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
217 |
Q |
| |
|
|||| ||||| ||||||||| |||||||| |||||||||||||||||||||| || |||||||| |||||||||||||| ||||| || |||||||| | |
|
|
| T |
49192195 |
gtttgtccttccctcaatttcgaaccaatctcacctttcatcttagcttctgatacatcaacccttgcttgattcgctgcttccatttgtgtcttttgac |
49192294 |
T |
|
| Q |
218 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
317 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||| || || || |||||||| ||||||||||||||||| |||||||| || | || ||||||||||| |
|
|
| T |
49192295 |
ccaaatatgagaaatactcatgacctggcacatcaactaactgtttaacattagcattgtaaatcaataaaccgaattggtttagttcgagttgaacttt |
49192394 |
T |
|
| Q |
318 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
417 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||| || |||||||| || ||||| |||||||||||| |
|
|
| T |
49192395 |
tccaaatacttcttgtttaaactcttttgttcctctgaaaacctcttccatggtcattgatgcagcgaggacacgtgtctcgccttcgatgattccttga |
49192494 |
T |
|
| Q |
418 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgttaacacgaggaccaatagtga |
517 |
Q |
| |
|
|| ||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||| |
|
|
| T |
49192495 |
acgagttccttaacatgattggagagtttatcgtgcggtgaaataagtttggcgtatttgagaaggctttccttatcatccacacgaggaccgatagtga |
49192594 |
T |
|
| Q |
518 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
617 |
Q |
| |
|
| || || ||||||||||||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||| |||| ||||| |
|
|
| T |
49192595 |
agacagcggggagaacaaaaggaagtttctctgcgctcattgcttgaacttcaaaggtgtaatttacaggtgagaggtcgaagacggagtaggattgacc |
49192694 |
T |
|
| Q |
618 |
gggaataatccatgctttctttgcaagttttatgtctttgat |
659 |
Q |
| |
|
||| | |||||||||||||||||| || |||||||||||||| |
|
|
| T |
49192695 |
gggtagaatccatgctttctttgcgagctttatgtctttgat |
49192736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 253 - 469
Target Start/End: Complemental strand, 29623081 - 29622865
Alignment:
| Q |
253 |
accaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaactttgtcgaatacttcttgtttaaactgttttgttcctc |
352 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||| |||||||||||| | |||||||||| | |||||||||||||||||||| || |||||||| |
|
|
| T |
29623081 |
accaattgtttgacattcacattgtaaatcaataactcgaattgattcagtttgtgttgaactttcttgaatacttcttgtttaaactcttctgttcctc |
29622982 |
T |
|
| Q |
353 |
tgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttgaacaagttcattaacatgattggagagtcgatcatg |
452 |
Q |
| |
|
| |||||||| ||||| ||||||||||| || || ||| |||| || ||||| ||| |||| |||||||||||||| || ||||| |||||| ||| || |
|
|
| T |
29622981 |
taaaaacctcttccatagtcatggaagctgcgaggacatgtgtctcaccttcgatgtttccctgaacaagttcattgacgtgatttgagagtttatcgtg |
29622882 |
T |
|
| Q |
453 |
tggtgaaataagtttgg |
469 |
Q |
| |
|
||| ||||| ||||||| |
|
|
| T |
29622881 |
tggggaaattagtttgg |
29622865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 533 - 640
Target Start/End: Complemental strand, 29622834 - 29622725
Alignment:
| Q |
533 |
caaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtg--agaggtccaagacggagcaggactgaccgggaataatccat |
630 |
Q |
| |
|
|||| |||||||| ||| | ||||| ||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||| || | ||||| ||| ||| |
|
|
| T |
29622834 |
caaagggaagtttatcgacgctcattgcttgaacttcgaaggtgtagttcaccggtgagagaggtcgaagacggtgcaggattgcctgggaagaattcat |
29622735 |
T |
|
| Q |
631 |
gctttctttg |
640 |
Q |
| |
|
| |||||||| |
|
|
| T |
29622734 |
gatttctttg |
29622725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 674 - 705
Target Start/End: Original strand, 49209024 - 49209055
Alignment:
| Q |
674 |
gttatcacaaggtattctgatgcctttgctac |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
49209024 |
gttatcacaaggtattctgatgcctttgctac |
49209055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 696
Target Start/End: Original strand, 37030870 - 37031544
Alignment:
| Q |
18 |
cacttcagtcctcactttaattccctccttgtcaccctctccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| | ||||||| ||||||||| || |||||||||||||| |||||||||||||||||| |
|
|
| T |
37030870 |
cacttcagtcctcactttaattccctccttctcaccctctccagctctctgcattgcaataaccttcgtctctgcatcaattttcgctgcattctgcagc |
37030969 |
T |
|
| Q |
118 |
gtttttccttgcctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
217 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
37030970 |
gtttgtccttccctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcttggcttccatctgcgtcttttgac |
37031069 |
T |
|
| Q |
218 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
317 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37031070 |
ccaaatatgagaaatactcatgaccgcgcacatccaccaattgcttaacattcgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
37031169 |
T |
|
| Q |
318 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| |||||||| |||||||||||| |
|
|
| T |
37031170 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatcgtcatggaagcagcgaggacacgtgtctccccttcgatgattccttga |
37031269 |
T |
|
| Q |
418 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgttaacacgaggaccaatagtga |
517 |
Q |
| |
|
|||||||||||||||||||||||| ||| | |||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| |
|
|
| T |
37031270 |
acaagttcattaacatgattggagtgtctagcatgcggtgaaataagtttggcgtatttgagaaggctttccttatcatccacacgaggaccaatagtga |
37031369 |
T |
|
| Q |
518 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
617 |
Q |
| |
|
| || || ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
37031370 |
agacagcggggagaacaaaaggaagtttctccgcgctcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacagagcaggattgacc |
37031469 |
T |
|
| Q |
618 |
gggaataatccatgctttctttgcaagttttatgtctttgatgagaataaatacctgttatcacaaggtattctgatgc |
696 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
37031470 |
gggaagaatccatgctttctttgcaagtttgatgtctttgatcag----aatacctgttatcacaaggtattctgatgc |
37031544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 655
Target Start/End: Original strand, 51824880 - 51825517
Alignment:
| Q |
18 |
cacttcagtcctcactttaattccctccttgtcaccctctccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
117 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||| || |||||| | |||||||| ||||||||||| |||||||| ||||| || |||||||||||||| |
|
|
| T |
51824880 |
cacttcagtcctaactctaaatccctccttgttactctctccagccctctgcatcgcaataactttcgtctctgcgtcaatttttgctgcattctgcagt |
51824979 |
T |
|
| Q |
118 |
gtttttccttgcctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
217 |
Q |
| |
|
|||| ||||| ||| |||| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
51824980 |
gtttgtccttccctagatttcgaaccaacttcacctttcatctcagcttctgccacatcaaccctagcttgattcgctgcttccatttgcgtcttttgcc |
51825079 |
T |
|
| Q |
218 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
317 |
Q |
| |
|
| | |||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51825080 |
ctaaatatgagaaatattcatgcccaggcacgtccaccaattgcttaacattcgcattgtaaatcaataatccgaattgattcaactcgagttgaacttt |
51825179 |
T |
|
| Q |
318 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
417 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||| ||||||||||| |||||||| || |||||||| || |||||||||||||||||| |
|
|
| T |
51825180 |
ctcgaatacttcttgtttaaactcttttgttcctttgaaaacctcttccatggtcatcgaagcagcgaggacacgtgtctcaccttcaatgattccttga |
51825279 |
T |
|
| Q |
418 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgttaacacgaggaccaatagtga |
517 |
Q |
| |
|
|| ||||| || || || || |||||| |||||| || ||||| ||||| ||||||||||| |||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
51825280 |
acgagttccttgacgtggttcgagagtttatcatgaggggaaatcagtttagcgtatttgaggaggctttcgtgatcgtcaacacgaggaccaattgtga |
51825379 |
T |
|
| Q |
518 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
617 |
Q |
| |
|
| || ||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| | | | || ||||| |
|
|
| T |
51825380 |
agaccgcaggaagaacgaaaggcagtttttcggcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtggaagattgacc |
51825479 |
T |
|
| Q |
618 |
gggaataatccatgctttctttgcaagttttatgtctt |
655 |
Q |
| |
|
|| | |||||||| ||||||||||||||| ||||||| |
|
|
| T |
51825480 |
agggaaaatccatgatttctttgcaagtttgatgtctt |
51825517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 655
Target Start/End: Complemental strand, 32592454 - 32591817
Alignment:
| Q |
18 |
cacttcagtcctcactttaattccctccttgtcaccctctccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
117 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||| |||||| | |||||||| ||||||| ||| ||||| || | ||| || |||||||||||||| |
|
|
| T |
32592454 |
cacttcagtcctaactctaaatccctccttgtcactctctccagccctctgcatagcaataattttcgtctccgcgttaatttttgctgcattctgcagt |
32592355 |
T |
|
| Q |
118 |
gtttttccttgcctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
217 |
Q |
| |
|
|||| ||||| ||| ||||||| |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
32592354 |
gtttgtccttccctagattttgagccaacttcacctttcatcttagcttctgacacttcaaccctagcttgattcgctgcttccatttgcgtcttttgcc |
32592255 |
T |
|
| Q |
218 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
317 |
Q |
| |
|
| | ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || | || ||||||||||| |
|
|
| T |
32592254 |
ctaaataggagaaatattcatgaccaggcacatccaccaattgcttaacattcgcattgtaaatcaataacccgaattggtttagttcgagttgaacttt |
32592155 |
T |
|
| Q |
318 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
417 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| || |||||||| ||||||||||||||||||||| |
|
|
| T |
32592154 |
ctcgaatacttcttgtttaaactcttttgttcctctgaaaacctcttccatggtcatcgaagcagcgaggacacgtgtctccccttcaatgattccttga |
32592055 |
T |
|
| Q |
418 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgttaacacgaggaccaatagtga |
517 |
Q |
| |
|
|| ||||| || |||||||| |||||| |||||| || ||||| ||||| ||||||||||| |||||||||||||| | ||||||||||||||| |||| |
|
|
| T |
32592054 |
acgagttccttgacatgattcgagagtttatcatgaggggaaatcagtttagcgtatttgaggaggctttcctgatcatcaacacgaggaccaattgtga |
32591955 |
T |
|
| Q |
518 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
617 |
Q |
| |
|
| || || || ||||| ||||| ||||| || |||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||| ||| || ||||| |
|
|
| T |
32591954 |
agacagcgggaagaacgaaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgacc |
32591855 |
T |
|
| Q |
618 |
gggaataatccatgctttctttgcaagttttatgtctt |
655 |
Q |
| |
|
|| | || ||||| ||||||||||||||| ||||||| |
|
|
| T |
32591854 |
agggaaaacccatgatttctttgcaagtttgatgtctt |
32591817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 655
Target Start/End: Original strand, 31527477 - 31528114
Alignment:
| Q |
18 |
cacttcagtcctcactttaattccctccttgtcaccctctccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
117 |
Q |
| |
|
|||||||||||| ||| ||| |||||||||||||| |||||| | |||||||| ||||||| ||| ||||| || ||||| || |||||||||||||| |
|
|
| T |
31527477 |
cacttcagtcctaactctaaatccctccttgtcactctctccagccctctgcatagcaataattttcgtctccgcgtcaatttttgctgcattctgcagt |
31527576 |
T |
|
| Q |
118 |
gtttttccttgcctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
217 |
Q |
| |
|
|||| ||||| ||| ||||||| |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
31527577 |
gtttgtccttccctagattttgagccaacttcacctttcatcttagcttctgacacatcaaccctagcttgattcgctgcttccatttgcgtcttttgcc |
31527676 |
T |
|
| Q |
218 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
317 |
Q |
| |
|
| | ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||| || | || ||||||||||| |
|
|
| T |
31527677 |
ctaaataggagaaatattcatgaccaggcacatccaccaattgcttaacattcgcattgtaaatcaataacccaaattggtttagttcgagttgaacttt |
31527776 |
T |
|
| Q |
318 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
417 |
Q |
| |
|
| ||||| |||||||||||||| |||||||||||||||||| || ||||||||||| |||||||| || |||||||| || ||||| |||||||||||| |
|
|
| T |
31527777 |
cttgaatatttcttgtttaaactcttttgttcctctgaaaacttcttccatggtcatcgaagcagcgaggacacgtgtctcaccttcgatgattccttga |
31527876 |
T |
|
| Q |
418 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgttaacacgaggaccaatagtga |
517 |
Q |
| |
|
|| ||||| ||||| ||||| |||||| |||||| || ||||| ||||| ||||||||||| |||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
31527877 |
acgagttccttaacgtgattcgagagtttatcatgaggggaaatcagtttagcgtatttgaggaggctttcctgatcgtcaacacgaggaccaattgtga |
31527976 |
T |
|
| Q |
518 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
617 |
Q |
| |
|
| || || || ||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||||| || |||| ||| || ||||| |
|
|
| T |
31527977 |
agacagcgggaagaacgaaaggcagtttttcggcactcatggcttgaacttcgaaggtgtagttcaccggagagaggtcgaaaacggtgcaagattgacc |
31528076 |
T |
|
| Q |
618 |
gggaataatccatgctttctttgcaagttttatgtctt |
655 |
Q |
| |
|
|| | |||||||| ||||||||||||||| ||||||| |
|
|
| T |
31528077 |
agggaaaatccatgatttctttgcaagtttgatgtctt |
31528114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 659
Target Start/End: Original strand, 26756738 - 26757378
Alignment:
| Q |
18 |
cacttcagtcctcactttaattccctccttgtcaccctctccggtcctctgcagtgcaataacttttgtctctgcatcaatcttcgctgcattctgcagc |
117 |
Q |
| |
|
|||||||||||| ||||||||| | ||||| ||| ||||||| | ||||||| ||||| ||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
26756738 |
cacttcagtcctaactttaatttcttccttctcagcctctccagccctctgcgtcgcaatgactttcgtctctgcatcaattttcgctgcattctgcagc |
26756837 |
T |
|
| Q |
118 |
gtttttccttgcctcaattttgaaccaatttcacctttcatcttagcttctgccacgtcaaccctagcttgattcgctgcctccatctgcgtcttttgcc |
217 |
Q |
| |
|
|||| ||||| |||| |||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || |||||||||| |
|
|
| T |
26756838 |
gtttgtcctttcctcgatttcgatccaacttcacctttcatcttagcttctgccacgtcaactttagcttgattcgctgcttccatttgtgtcttttgcc |
26756937 |
T |
|
| Q |
218 |
ccagatatgagaaatactcatgaccaggcacatccaccaattgcttaacatttgcattgtaaatcaataatccgaattgattcaactcaagttgaacttt |
317 |
Q |
| |
|
| | || ||||||||||| ||||| || ||||| ||||||||||||||||| |||||||||||||||| ||||| | ||||| || ||||||||||| |
|
|
| T |
26756938 |
ctaagtaagagaaatactcgtgacctggaacatctaccaattgcttaacattcacattgtaaatcaataacccgaactaattcagttcgagttgaacttt |
26757037 |
T |
|
| Q |
318 |
gtcgaatacttcttgtttaaactgttttgttcctctgaaaacctcctccatggtcatggaagcagccagtacacgtgtttccccttcaatgattccttga |
417 |
Q |
| |
|
| ||||||||||| | |||||| ||||||||||||||| ||||| ||||| |||||||||||||| || |||||||| || | ||| |||||||||||| |
|
|
| T |
26757038 |
cttgaatacttcttttataaactcttttgttcctctgaagacctcttccatagtcatggaagcagcgaggacacgtgtctcgctttcgatgattccttga |
26757137 |
T |
|
| Q |
418 |
acaagttcattaacatgattggagagtcgatcatgtggtgaaataagtttggcgtatttgagaaggctttcctgatcgttaacacgaggaccaatagtga |
517 |
Q |
| |
|
|||||||||||||| ||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
26757138 |
acaagttcattaacgtgattggagtgtctatcatgctgtgaaattagtttggcgtatttgagaaggctttcatgatcgtccacacgaggacctatagtga |
26757237 |
T |
|
| Q |
518 |
aaacggcagggagaacaaaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgacc |
617 |
Q |
| |
|
| || || |||||||| || || ||||| || |||||||| |||||||||| ||||||||||||||| ||||||| || || ||| | | || | ||| |
|
|
| T |
26757238 |
acacagcggggagaacgaatgggagtttttcagcactcattgcttgaactttgaaggtgtagtttactggtgaga-gttgaaaacgctgtacgatttacc |
26757336 |
T |
|
| Q |
618 |
gggaataatccatgctttctttgcaagttttatgtctttgat |
659 |
Q |
| |
|
||||| |||||||||||| ||| | ||||| ||||||||||| |
|
|
| T |
26757337 |
gggaagaatccatgctttgtttacgagtttgatgtctttgat |
26757378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University