View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_31 (Length: 344)
Name: NF6636_low_31
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 34506381 - 34506051
Alignment:
| Q |
1 |
atgtgttgttcatatacctgttctatgtcaatgcttcagtagttttttatattccttatttatgtctaagaaaataaacgttacatgtagttatttttat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506381 |
atgtgttgttcatatacctgttctatgtcaatgcttcagtagttttttatattccttacttatgtctaagaaaataaacgttacatgtagttatttttat |
34506282 |
T |
|
| Q |
101 |
tttctgtgtccatagacttatattatcattgttttgtgcaggttatttgtgtgatttctatagttttgatatttggatcactagcagaatgcaaccttga |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506281 |
tttctgtgtccataaacttatattatcattgttttgtgcaggttatttgtgtgatttctatagttttgatatttggatcactagcagaatgcaaccttga |
34506182 |
T |
|
| Q |
201 |
ttaccttgcaatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatactgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506181 |
ttaccttgcaatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatactgca |
34506082 |
T |
|
| Q |
301 |
ataaccaaacttagccagtatgcaaatgatg |
331 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
34506081 |
ataaccaaacttagccagtatgcaaatgatg |
34506051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 291
Target Start/End: Original strand, 29762867 - 29762920
Alignment:
| Q |
238 |
ttgacagattttggtggtgttggtgatggaaaaacctctaacacaaaagctttt |
291 |
Q |
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| T |
29762867 |
ttgacagattttggtggtgttggagatggaaatacatctaatacaaaggctttt |
29762920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 192 - 331
Target Start/End: Complemental strand, 45079518 - 45079379
Alignment:
| Q |
192 |
caaccttgattaccttgcaatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacctctaacacaaaagctttt |
291 |
Q |
| |
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|||| ||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||||||||| |
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| T |
45079518 |
caactttgattatcctgcaatcaattgcagaaaacacagtgcagttttaacagattttggtgctgttggtgatggcaaaacccttaacacaaaagctttt |
45079419 |
T |
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| Q |
292 |
aatactgcaataaccaaacttagccagtatgcaaatgatg |
331 |
Q |
| |
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||| | ||||||||||| |||||||| ||||||||||||| |
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| T |
45079418 |
aatgcagcaataaccaaccttagccaatatgcaaatgatg |
45079379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 45076375 - 45076255
Alignment:
| Q |
211 |
atcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatactgcaataaccaaac |
310 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| | ||||||||||| | |
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| T |
45076375 |
atcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatc |
45076276 |
T |
|
| Q |
311 |
ttagccagtatgcaaatgatg |
331 |
Q |
| |
|
||||||| ||||||||||||| |
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| T |
45076275 |
ttagccaatatgcaaatgatg |
45076255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 45083790 - 45083670
Alignment:
| Q |
211 |
atcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatactgcaataaccaaac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||| | ||||||||||| | |
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| T |
45083790 |
atcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacccttaacacaaaggcatttaattcagcaataaccaatc |
45083691 |
T |
|
| Q |
311 |
ttagccagtatgcaaatgatg |
331 |
Q |
| |
|
||||||| ||||||||||||| |
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| T |
45083690 |
ttagccaatatgcaaatgatg |
45083670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 331
Target Start/End: Complemental strand, 45068752 - 45068618
Alignment:
| Q |
197 |
ttgattaccttgcaatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatac |
296 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| ||||||||| || |||||| ||||||||| || |||||| | |
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| T |
45068752 |
ttgactaccatgcaatcaattgccgaaaacacaatgcagttttaacagattttggtgctgttggtgacggcaaaacccttaacacaaaggcatttaattc |
45068653 |
T |
|
| Q |
297 |
tgcaataaccaaacttagccagtatgcaaatgatg |
331 |
Q |
| |
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||||||||||| |||||||| ||||||||||||| |
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| T |
45068652 |
agcaataaccaatcttagccaatatgcaaatgatg |
45068618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 61 - 193
Target Start/End: Complemental strand, 45068913 - 45068783
Alignment:
| Q |
61 |
tatgtctaagaaaataaacgttacatgtagttatttttattttctgtgtccatagacttatattatcattgttttgtgcaggttatttgtgtgatttcta |
160 |
Q |
| |
|
|||||||||||||||||| |||||| || ||| |||||||||||||| | |||||| ||| |||| ||||||| |||||||||||||||||||||||| |
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| T |
45068913 |
tatgtctaagaaaataaatgttacaggtggttgtttttattttctgtatgcataga-tta-attactgttgttttatgcaggttatttgtgtgatttcta |
45068816 |
T |
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| Q |
161 |
tagttttgatatttggatcactagcagaatgca |
193 |
Q |
| |
|
||||||||||||| | ||||||||||||||||| |
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| T |
45068815 |
tagttttgatattggtatcactagcagaatgca |
45068783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 45079715 - 45079544
Alignment:
| Q |
19 |
tgttctatgtcaatgcttcagtagttttttatattccttatttatgtctaagaaaataaacgttacatgtagttatttttattttctgtgtccatagact |
118 |
Q |
| |
|
||||||||| ||||| ||| |||||||||| || | ||||||| || ||||| ||||||||||||||| |||||| ||||||||| || | |||||| |
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| T |
45079715 |
tgttctatgacaatgtctcaaaagttttttatgttgcctatttatatccaagaatataaacgttacatgtgattatttatattttctgcgtgc-tagact |
45079617 |
T |
|
| Q |
119 |
tatattatcattgttttgtgcaggttatttgtgtgatttctatagttttgatatttggatcactagcagaatgca |
193 |
Q |
| |
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|||| | ||||||||||||||||||||| ||||||| ||| ||||| ||||||| ||||||||||||||||||| |
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|
| T |
45079616 |
tata--accattgttttgtgcaggttattggtgtgatatctgtagttctgatattgggatcactagcagaatgca |
45079544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 45076485 - 45076419
Alignment:
| Q |
128 |
attgttttgtgcaggttatttgtgtgatttctatagttttgatatttggatcactagcagaatgcaa |
194 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||| || || |||||||||| ||| ||||||||||||| |
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| T |
45076485 |
attgttttgtgcaggttattggtgtgatctctgtacttctgatatttggttcattagcagaatgcaa |
45076419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 45083900 - 45083835
Alignment:
| Q |
128 |
attgttttgtgcaggttatttgtgtgatttctatagttttgatatttggatcactagcagaatgca |
193 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| ||||| ||||||| ||| ||||||||||||||| |
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|
| T |
45083900 |
attgttttgtgcaggttatacgtgtgatctctgtagttgtgatattgggaacactagcagaatgca |
45083835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 244 - 304
Target Start/End: Complemental strand, 11065196 - 11065136
Alignment:
| Q |
244 |
gattttggtggtgttggtgatggaaaaacctctaacacaaaagcttttaatactgcaataa |
304 |
Q |
| |
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||||||||||||||||| ||||||||||| || |||||||| |||||||| ||||||||| |
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|
| T |
11065196 |
gattttggtggtgttggagatggaaaaacatcaaacacaaaggcttttaaatctgcaataa |
11065136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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