View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6636_low_32 (Length: 335)

Name: NF6636_low_32
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6636_low_32
NF6636_low_32
[»] chr5 (5 HSPs)
chr5 (1-145)||(1083356-1083500)
chr5 (265-316)||(17064323-17064374)
chr5 (266-316)||(37976546-37976596)
chr5 (265-313)||(20983084-20983132)
chr5 (265-315)||(35237104-35237154)
[»] chr8 (10 HSPs)
chr8 (265-316)||(4840140-4840191)
chr8 (265-316)||(19723311-19723362)
chr8 (265-314)||(27881069-27881118)
chr8 (265-314)||(28021250-28021299)
chr8 (266-314)||(29767190-29767238)
chr8 (265-315)||(11404002-11404052)
chr8 (265-314)||(32296720-32296769)
chr8 (265-298)||(17095568-17095601)
chr8 (265-301)||(24475077-24475113)
chr8 (265-313)||(28739642-28739690)
[»] chr3 (14 HSPs)
chr3 (265-316)||(7417798-7417849)
chr3 (265-316)||(8400855-8400906)
chr3 (265-315)||(22855888-22855938)
chr3 (265-316)||(35198765-35198816)
chr3 (265-316)||(43334135-43334186)
chr3 (265-316)||(50823698-50823749)
chr3 (265-316)||(50852111-50852162)
chr3 (265-315)||(48078022-48078072)
chr3 (265-315)||(55468000-55468050)
chr3 (265-305)||(52545332-52545372)
chr3 (265-316)||(34824556-34824607)
chr3 (266-316)||(50726079-50726129)
chr3 (266-316)||(50786719-50786769)
chr3 (265-301)||(29635883-29635919)
[»] chr2 (19 HSPs)
chr2 (265-316)||(45137051-45137102)
chr2 (265-316)||(6672874-6672925)
chr2 (265-316)||(25987743-25987794)
chr2 (265-316)||(40156040-40156091)
chr2 (265-315)||(21637898-21637948)
chr2 (265-314)||(17136389-17136438)
chr2 (265-316)||(7860227-7860278)
chr2 (265-315)||(10745313-10745363)
chr2 (265-316)||(36836410-36836461)
chr2 (265-313)||(3200884-3200932)
chr2 (265-316)||(2357156-2357207)
chr2 (265-316)||(2754132-2754183)
chr2 (265-316)||(44650393-44650444)
chr2 (265-315)||(26690155-26690205)
chr2 (265-315)||(30372761-30372811)
chr2 (265-315)||(36380213-36380263)
chr2 (267-316)||(5039420-5039469)
chr2 (265-294)||(558520-558549)
chr2 (265-301)||(20961496-20961532)
[»] chr1 (11 HSPs)
chr1 (265-316)||(30054523-30054574)
chr1 (265-316)||(20014458-20014509)
chr1 (265-316)||(4573379-4573430)
chr1 (265-316)||(45324006-45324057)
chr1 (265-315)||(21090116-21090166)
chr1 (265-315)||(30370141-30370191)
chr1 (266-316)||(30850922-30850972)
chr1 (265-315)||(12025182-12025232)
chr1 (265-304)||(44438631-44438670)
chr1 (270-316)||(15034455-15034501)
chr1 (265-303)||(33763335-33763373)
[»] chr7 (14 HSPs)
chr7 (265-316)||(16059434-16059485)
chr7 (265-316)||(35109691-35109742)
chr7 (265-316)||(38265318-38265369)
chr7 (265-316)||(41151172-41151223)
chr7 (266-316)||(12472121-12472171)
chr7 (265-316)||(18117025-18117076)
chr7 (265-316)||(21577179-21577230)
chr7 (265-316)||(34721834-34721885)
chr7 (265-316)||(48176399-48176450)
chr7 (265-314)||(11216771-11216820)
chr7 (265-316)||(45278452-45278503)
chr7 (265-316)||(38405235-38405286)
chr7 (265-303)||(245345-245383)
chr7 (265-298)||(37095291-37095324)
[»] chr6 (6 HSPs)
chr6 (265-316)||(14496352-14496403)
chr6 (265-316)||(35163831-35163882)
chr6 (265-314)||(19686908-19686957)
chr6 (265-316)||(14505604-14505655)
chr6 (265-316)||(2711815-2711866)
chr6 (265-295)||(20685346-20685376)
[»] chr4 (13 HSPs)
chr4 (265-316)||(8740448-8740499)
chr4 (265-316)||(46494479-46494530)
chr4 (265-315)||(36192542-36192592)
chr4 (266-316)||(51066493-51066543)
chr4 (266-316)||(51714047-51714097)
chr4 (265-316)||(32139164-32139215)
chr4 (265-316)||(39863859-39863910)
chr4 (265-316)||(50905748-50905799)
chr4 (265-316)||(30970465-30970516)
chr4 (265-316)||(7173666-7173717)
chr4 (265-315)||(2294791-2294841)
chr4 (265-316)||(47627074-47627127)
chr4 (265-305)||(50399723-50399763)
[»] scaffold0021 (1 HSPs)
scaffold0021 (265-315)||(107772-107822)
[»] scaffold0691 (1 HSPs)
scaffold0691 (265-314)||(7050-7099)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 1083356 - 1083500
Alignment:
Q  1 aaactgaagacactactcaacaaagggacggttttgcttctggaggttagtatcttattttcttcctttaaattaaaaattcactttttatgaacaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1083356 aaactgaagacactactcaacaaagggacggttttgcttctggaggttagtatcttattttcttcctttaaattaaaaattcactttttatgaacaaaat 1083455  T
Q  101 caaaggaaccaagatgcaaatgcaaaagggttgtgttgtgtataa 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1083456 caaaggaaccaagatgcaaatgcaaaagggttgtgttgtgtataa 1083500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 17064374 - 17064323
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17064374 catttacctccctccaaaggcactagcgaggctcgaacccgggttctctcgg 17064323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 37976596 - 37976546
Alignment:
Q  266 atttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||||||||    
T  37976596 atttacctcccttcaaatgcactagcggggctcgaacccaggttctctcgg 37976546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 20983084 - 20983132
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctct 313  Q
    |||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  20983084 catttacctctctccgaaggcactagcggggctcgaacccggattctct 20983132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 35237104 - 35237154
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    ||||||||||||| ||||| ||||||||||||||||| || | ||||||||    
T  35237104 catttacctcccttcaaagacactagcggggctcgaatccagattctctcg 35237154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 4840191 - 4840140
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4840191 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 4840140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 19723362 - 19723311
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19723362 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 19723311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 27881069 - 27881118
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctc 314  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27881069 catttacctcccttcaaaggcactagcggggctcgaacccgggttctctc 27881118  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 28021250 - 28021299
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctc 314  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28021250 catttacctcccttcaaaggcactagcggggctcgaacccgggttctctc 28021299  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 314
Target Start/End: Complemental strand, 29767238 - 29767190
Alignment:
Q  266 atttacctccctccaaaggcactagcggggctcgaacccgggttctctc 314  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  29767238 atttacctcccttcaaaggcactagcggggctcgaccccgggttctctc 29767190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 11404052 - 11404002
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    ||||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  11404052 catttacctccctccaaagacactagcgaggctcgaacccaggttctctcg 11404002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 32296720 - 32296769
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctc 314  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  32296720 catttacctcccttcaaaggcactagcagggcttgaacccgggttctctc 32296769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 298
Target Start/End: Complemental strand, 17095601 - 17095568
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctc 298  Q
    ||||||||||||||||||||||||||||||||||    
T  17095601 catttacctccctccaaaggcactagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 24475077 - 24475113
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaa 301  Q
    ||||||||||||||||||||||||||||| |||||||    
T  24475077 catttacctccctccaaaggcactagcggagctcgaa 24475113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 313
Target Start/End: Original strand, 28739642 - 28739690
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctct 313  Q
    ||||||| | |||||||||||||||| |||||| |||||| ||||||||    
T  28739642 catttactttcctccaaaggcactagtggggcttgaacccaggttctct 28739690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 7417849 - 7417798
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7417849 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 7417798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 8400906 - 8400855
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400906 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 8400855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 22855938 - 22855888
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  22855938 catttacctccctccaaagacactagcggggctcgaacctgggttctctcg 22855888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 35198816 - 35198765
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||| |||||||| ||| |||||||||||||||||||||||||    
T  35198816 catttacctccctgcaaaggcattagtggggctcgaacccgggttctctcgg 35198765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 43334135 - 43334186
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||| ||| |||||||||||||||||| |||||||||||||    
T  43334135 catttacctccctcccaagacactagcggggctcgaactcgggttctctcgg 43334186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 50823749 - 50823698
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  50823749 catttacctccctccaaaggcactaacgggactcgaacccggattctctcgg 50823698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 50852111 - 50852162
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||||||    
T  50852111 catttacctccctccaaaggcactaacgggactcgaacccggattctctcgg 50852162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 48078022 - 48078072
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    ||||||||| |||||||||||||||| | |||||||||||| |||||||||    
T  48078022 catttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcg 48078072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 55468050 - 55468000
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    |||||||||||||||||| ||| ||| ||||||||||||||| ||||||||    
T  55468050 catttacctccctccaaacgcattagtggggctcgaacccggattctctcg 55468000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 52545372 - 52545332
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccg 305  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  52545372 catttacctccctttaaaggcactagcggggctcgaacccg 52545332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 34824607 - 34824556
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||| ||||||||||| |||| ||||||| | |||||||||||    
T  34824607 catttacctcccttcaaaggcactaacgggactcgaactcaggttctctcgg 34824556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 50726079 - 50726129
Alignment:
Q  266 atttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||| ||||||||| ||||| |||||||||||||||  |||||||||    
T  50726079 atttaccttcctccaaagacactaacggggctcgaacccgaattctctcgg 50726129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 50786769 - 50786719
Alignment:
Q  266 atttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||| ||||||||| ||||| |||||||||||||||  |||||||||    
T  50786769 atttaccttcctccaaagacactaacggggctcgaacccgaattctctcgg 50786719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 29635919 - 29635883
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaa 301  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  29635919 catttacctcccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 45137051 - 45137102
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45137051 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 45137102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 6672874 - 6672925
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6672874 catttacctccctccaaaggcactagcggggcttgaacccgggttctctcgg 6672925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 25987743 - 25987794
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25987743 catttacctccctccaaaggcactagcggggctcgaacccgagttctctcgg 25987794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 40156091 - 40156040
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40156091 catttacctccctccaaaggcactagcggggctcgaacccggattctctcgg 40156040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 21637948 - 21637898
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21637948 catttacctccctccaaaggcactagcggggctcaaacccgggttctctcg 21637898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 17136438 - 17136389
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctc 314  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17136438 catttacctccctccaaaggcactaacggggctcgaacccgggttctctc 17136389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 7860227 - 7860278
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  7860227 catttacctccctccaaaggcactagcggggctcaaacccaggttctctcgg 7860278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 10745313 - 10745363
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  10745313 catttacctccctctaaaggcactagcggggctcggacccgggttctctcg 10745363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 36836410 - 36836461
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  36836410 catttacctccctccaaaggcaccagcgggactcgaactcgggttctctcgg 36836461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 265 - 313
Target Start/End: Complemental strand, 3200932 - 3200884
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctct 313  Q
    |||||||||||||||||||||||||||| |||||||| || ||||||||    
T  3200932 catttacctccctccaaaggcactagcgaggctcgaatccaggttctct 3200884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 2357156 - 2357207
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||| ||||| ||  |||||||||||||||||||||    
T  2357156 catttacctccctccaaaggtactagtggaactcgaacccgggttctctcgg 2357207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 2754132 - 2754183
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||| ||| ||| |||||| ||||||||||||||    
T  2754132 catttacctccctccaaaggcattagtgggactcgaatccgggttctctcgg 2754183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 44650444 - 44650393
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||| ||| |||||||  |||||||||||||    
T  44650444 catttacctccctccaaaggcactaacggagctcgaaatcgggttctctcgg 44650393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 26690205 - 26690155
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    |||||||||||||||||| ||||||||||| ||||||||| | ||||||||    
T  26690205 catttacctccctccaaaagcactagcgggactcgaacccagattctctcg 26690155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 30372761 - 30372811
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    ||||||||||| ||||||||||||||||| |||||||||| || |||||||    
T  30372761 catttacctccttccaaaggcactagcggagctcgaacccaggatctctcg 30372811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 36380213 - 36380263
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    ||||||||||||||||||||||||||||||| || |||||| ||| |||||    
T  36380213 catttacctccctccaaaggcactagcggggttcaaacccgagttttctcg 36380263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 5039469 - 5039420
Alignment:
Q  267 tttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||| ||| |||||||||| ||||||||||| ||||||||||    
T  5039469 tttacctccctctaaaagcactagcggagctcgaacccgagttctctcgg 5039420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 558520 - 558549
Alignment:
Q  265 catttacctccctccaaaggcactagcggg 294  Q
    ||||||||||||||||||||||||||||||    
T  558520 catttacctccctccaaaggcactagcggg 558549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 20961532 - 20961496
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaa 301  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  20961532 catttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 30054523 - 30054574
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30054523 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 30054574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 20014509 - 20014458
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  20014509 catttacctccctccaaaggtactagcgggactcgaacccgggttctctcgg 20014458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 4573430 - 4573379
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||| || ||| |||||||||||||||||||||||||    
T  4573430 catttacctccctccaaagacattagtggggctcgaacccgggttctctcgg 4573379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 45324057 - 45324006
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  45324057 catttacctccctccaaaagcactagcggggctggaacccaggttctctcgg 45324006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 21090166 - 21090116
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    ||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  21090166 catttacctccctccaacggcactagcggggctcgaacccgaattctctcg 21090116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 30370141 - 30370191
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    ||||||||||||||||||| |||||| ||||||||||||||| ||||||||    
T  30370141 catttacctccctccaaagacactagtggggctcgaacccggattctctcg 30370191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 30850922 - 30850972
Alignment:
Q  266 atttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  30850922 atttacctccctccaaagacactaacggggctcgaacccgagttctctcgg 30850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 12025232 - 12025182
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    ||||||||| |||||||||||||||  ||||||||||||| ||||||||||    
T  12025232 catttaccttcctccaaaggcactaatggggctcgaacccaggttctctcg 12025182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 44438631 - 44438670
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaaccc 304  Q
    |||||||||||||||||||||| |||||| ||||||||||    
T  44438631 catttacctccctccaaaggcattagcggagctcgaaccc 44438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 15034501 - 15034455
Alignment:
Q  270 acctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcgg 15034455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 33763335 - 33763373
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacc 303  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  33763335 catttgcctccctctaaaggcactagcggggctcgaacc 33763373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 16059434 - 16059485
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16059434 catttacctccctgcaaaggcactagcggggctcgaacccgggttctctcgg 16059485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 35109742 - 35109691
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35109742 catttacctccctccaaaggcactagtggggctcgaacccgggttctctcgg 35109691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 38265318 - 38265369
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38265318 catttacctccctccaaaggcactagcggggctcgaacccaggttctctcgg 38265369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 41151223 - 41151172
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41151223 catttacctccctccaaagacactagcggggctcgaacccgggttctctcgg 41151172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 12472171 - 12472121
Alignment:
Q  266 atttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12472171 atttacctccctccaaaggcactagtggggctcgaacccgggttctctcgg 12472121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 18117025 - 18117076
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  18117025 catttacctccctctaaaggcactagcgtggctcgaacccgggttctctcgg 18117076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 21577179 - 21577230
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  21577179 catttacctccctccaaaggcattagtggggctcgaacccgggttctctcgg 21577230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 34721885 - 34721834
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  34721885 catttacctccctccaaaggcactagcggggcttgaatccgggttctctcgg 34721834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 48176450 - 48176399
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  48176450 catttacctccttccaaaggcactagcggggctcgaacccggattctctcgg 48176399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 11216820 - 11216771
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctc 314  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  11216820 catttacctccctccaaaggcactaatggggctcgaacccgggttctctc 11216771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 45278503 - 45278452
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| ||||||    
T  45278503 catttacttcccttcaaaggcactagcggggctcgaacccgggttatctcgg 45278452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 38405235 - 38405286
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||||||||| ||||||||| ||  |||||||||    
T  38405235 catttacctccctccaaaggcactagcgaggctcgaactcgaattctctcgg 38405286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 245345 - 245383
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacc 303  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  245345 catttacctccctccaagggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 298
Target Start/End: Original strand, 37095291 - 37095324
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctc 298  Q
    ||||||||||||||||||| ||||||||||||||    
T  37095291 catttacctccctccaaagacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 14496403 - 14496352
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14496403 catttacctccctccaaaggcactagtggggctcgaacccgggttctctcgg 14496352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 35163831 - 35163882
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  35163831 catttacctccctccaaaggcattagtggggctcgaaccctggttctctcgg 35163882  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 19686908 - 19686957
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctc 314  Q
    ||||||||||||| |||||||||||| ||||||||||||| |||||||||    
T  19686908 catttacctccctacaaaggcactagaggggctcgaacccaggttctctc 19686957  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 14505604 - 14505655
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||| ||||||||||||||||||  |||| ||||||||    
T  14505604 catttacctccctccaaaagcactagcggggctcgaattcgggatctctcgg 14505655  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 2711815 - 2711866
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||| ||||    
T  2711815 catttacctccctccaaaagcactagtggggctcgaatccaggttctatcgg 2711866  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 295
Target Start/End: Complemental strand, 20685376 - 20685346
Alignment:
Q  265 catttacctccctccaaaggcactagcgggg 295  Q
    |||||||||||||||||||||||||||||||    
T  20685376 catttacctccctccaaaggcactagcgggg 20685346  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 8740499 - 8740448
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8740499 catttacctccctccaaaggcactagcggggctcgaacccgggatctctcgg 8740448  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 46494479 - 46494530
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  46494479 catttacctccctccaaaggcactagtggggctcgaacccgggttctctcgg 46494530  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 265 - 315
Target Start/End: Complemental strand, 36192592 - 36192542
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36192592 catttacctccctccaaaggcactagtggggctcgaacccgggttctctcg 36192542  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 51066543 - 51066493
Alignment:
Q  266 atttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  51066543 atttacctccctccaaaggcactagcggagctcgaacccgagttctctcgg 51066493  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Original strand, 51714047 - 51714097
Alignment:
Q  266 atttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  51714047 atttacctcccttcaaaggcactagtggggctcgaacccgggttctctcgg 51714097  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 32139215 - 32139164
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  32139215 catttacctccctccaaagacactagcggggttcgaacccaggttctctcgg 32139164  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 39863859 - 39863910
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||| |||||||||||||||||||||||  |||||||||||||||||||    
T  39863859 catttacttccctccaaaggcactagcggggtccgaacccgggttctctcgg 39863910  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 316
Target Start/End: Complemental strand, 50905799 - 50905748
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    |||||||||| ||||||||||||||||||||||||||||| | |||||||||    
T  50905799 catttacctctctccaaaggcactagcggggctcgaacccagattctctcgg 50905748  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 30970465 - 30970516
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||||| |||||||||||| | ||||||||||||| |||||||||    
T  30970465 catttacctcccttcaaaggcactagtgaggctcgaacccggattctctcgg 30970516  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 7173666 - 7173717
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 316  Q
    ||||||||||| |||||||||||||||||| || |||||  |||||||||||    
T  7173666 catttacctccttccaaaggcactagcgggtcttgaacctaggttctctcgg 7173717  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 2294791 - 2294841
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    ||||||||| ||||||||||||||||||   |||||||||| |||||||||    
T  2294791 catttaccttcctccaaaggcactagcgaaactcgaacccgagttctctcg 2294841  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 316
Target Start/End: Original strand, 47627074 - 47627127
Alignment:
Q  265 catttacctccctccaaaggcactagcgggg--ctcgaacccgggttctctcgg 316  Q
    ||||||||||||| |||||||||||| ||||  |||||| ||||||||||||||    
T  47627074 catttacctcccttcaaaggcactagtggggctctcgaatccgggttctctcgg 47627127  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 305
Target Start/End: Original strand, 50399723 - 50399763
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccg 305  Q
    ||||||||| |||||||  ||||||||||||||||||||||    
T  50399723 catttaccttcctccaagagcactagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 107772 - 107822
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 315  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  107772 catttacctccctccaaaggcactagcggggctcgaactcgggttctctcg 107822  T

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Target: scaffold0691 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 7050 - 7099
Alignment:
Q  265 catttacctccctccaaaggcactagcggggctcgaacccgggttctctc 314  Q
    ||||||| |||||||||| ||||||||||| ||||||||||| |||||||    
T  7050 catttacttccctccaaacgcactagcgggactcgaacccggattctctc 7099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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