View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_36 (Length: 308)
Name: NF6636_low_36
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 679520 - 679239
Alignment:
| Q |
17 |
gattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattc |
116 |
Q |
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| T |
679520 |
gattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattc |
679421 |
T |
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| Q |
117 |
tttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaa |
216 |
Q |
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| T |
679420 |
tttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaa |
679321 |
T |
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| Q |
217 |
atatagttatatgcctcattttca-nnnnnnnnnnctttctagttcttagaattagaagaatgctgcgtatatttgagtatt |
297 |
Q |
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| T |
679320 |
atgtagttatatgcctcattttcatttttttttttctttctagttctgagaattagaagaatgctgcgtatatttgagtatt |
679239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 51 - 297
Target Start/End: Complemental strand, 751290 - 751046
Alignment:
| Q |
51 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
150 |
Q |
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| T |
751290 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
751191 |
T |
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| Q |
151 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnn |
250 |
Q |
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| T |
751190 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- |
751092 |
T |
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| Q |
251 |
ctttctagttcttagaattagaagaatgctgcgtatatttgagtatt |
297 |
Q |
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| T |
751091 |
-tttctagttcttagaattagaagaatgctgcgtatatttgagtatt |
751046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 213
Target Start/End: Original strand, 2632504 - 2632659
Alignment:
| Q |
53 |
ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcag----attctttcaacacttgctcttttgattatcatagta |
148 |
Q |
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| T |
2632504 |
ttcaattctccaaaccctgcagttttaaaatcagcaca----ttgttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatag-- |
2632597 |
T |
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| Q |
149 |
tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt |
213 |
Q |
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| T |
2632598 |
tcatacacttcacatgtgtgtgaataattc---atatttagctttttgaaacttatagtgagttt |
2632659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 747438 - 747402
Alignment:
| Q |
17 |
gattattggacaagaatagagggcatcccacattatt |
53 |
Q |
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| T |
747438 |
gattattggaaaagaatagagggcatcccacattatt |
747402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 9594930 - 9594898
Alignment:
| Q |
17 |
gattattggacaagaatagagggcatcccacat |
49 |
Q |
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| T |
9594930 |
gattattggacaagaatagaggacatcccacat |
9594898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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