View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6636_low_37 (Length: 293)

Name: NF6636_low_37
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6636_low_37
NF6636_low_37
[»] chr6 (10 HSPs)
chr6 (22-159)||(31055775-31055912)
chr6 (183-286)||(31056786-31056891)
chr6 (186-276)||(31080662-31080752)
chr6 (183-269)||(31045963-31046049)
chr6 (183-240)||(31027122-31027179)
chr6 (183-270)||(31096265-31096352)
chr6 (183-240)||(31035533-31035590)
chr6 (191-260)||(31059173-31059242)
chr6 (183-240)||(31110547-31110604)
chr6 (183-274)||(31070017-31070109)
[»] scaffold0018 (1 HSPs)
scaffold0018 (183-274)||(170676-170767)
[»] scaffold0202 (1 HSPs)
scaffold0202 (210-257)||(4968-5015)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 31055775 - 31055912
Alignment:
Q  22 tatacgatcatttctcacatcactcatgatttttcaaaagcttattgattgtcatccaacatatcatgattcagtagttggacgacaaaatattgttgaa 121  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31055775 tatacgatcatttctcgcatcactcatgatttttcaaaagcttattgattgtcatccaacatatcatgattcagtagttggacgacaaaatattgttgaa 31055874  T
Q  122 cccatgatcatttatacttcactaaatgtgatcaagca 159  Q
    |||||||||||||||||| |||||||||||||||||||    
T  31055875 cccatgatcatttatactccactaaatgtgatcaagca 31055912  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 31056786 - 31056891
Alignment:
Q  183 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttgg--cacccaatctcatattgatg 280  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||| ||    
T  31056786 atcgagtatgtgttaaaacaggcaggaaggtttacatataaaataagattgtatatcaaatattaactcatagtttggcacacccaatctcatattgctg 31056885  T
Q  281 atgtcc 286  Q
     |||||    
T  31056886 ctgtcc 31056891  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 276
Target Start/End: Original strand, 31080662 - 31080752
Alignment:
Q  186 gagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatctcatatt 276  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||| ||||||| | |||| ||||||||||| |  || ||||||||||||    
T  31080662 gagtatgtgttaaaacatgcacgaaggtttacctataaaataagagtgtatataacttatcaactcatagttggagactcaatctcatatt 31080752  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 31045963 - 31046049
Alignment:
Q  183 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatc 269  Q
    |||||||||||||||||||| ||| |||| ||| | |||||||||||| |||||||||   |||| ||||||||| || ||||||||    
T  31045963 atcgagtatgtgttaaaacaggcatgaagatttccctataaaataagagtgtatatcacccattatctcatagttggggacccaatc 31046049  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 31027122 - 31027179
Alignment:
Q  183 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatca 240  Q
    |||||||||||||||||||| |||   |||||||| |||||||||||| |||||||||    
T  31027122 atcgagtatgtgttaaaacaggcacagaggtttacctataaaataagagtgtatatca 31027179  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 31096352 - 31096265
Alignment:
Q  183 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatct 270  Q
    |||||||||  ||||||| | |||  ||| ||||| |||||||||||| |||| |||| |||||||| ||||||| || |||||||||    
T  31096352 atcgagtatacgttaaaataggcactaagttttacttataaaataagagtgtacatcacttattaacacatagttggggacccaatct 31096265  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 31035533 - 31035590
Alignment:
Q  183 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatca 240  Q
    ||||||||||||||||||||  || |||||||| | ||||||| |||| |||||||||    
T  31035533 atcgagtatgtgttaaaacagtcatgaaggttttcctataaaagaagagtgtatatca 31035590  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 31059173 - 31059242
Alignment:
Q  191 tgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttgg 260  Q
    ||||| |||||| |||  ||| ||||| |||||||||||| ||||||||| ||| | |||||||||||||    
T  31059173 tgtgtaaaaacaggcacaaagatttacctataaaataagagtgtatatcatttacttactcatagtttgg 31059242  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 31110547 - 31110604
Alignment:
Q  183 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatca 240  Q
    |||||||||||||||||||| | | ||| |||||| |||||||||||  |||||||||    
T  31110547 atcgagtatgtgttaaaacatgtatgaatgtttacctataaaataagggtgtatatca 31110604  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 31070017 - 31070109
Alignment:
Q  183 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcac-ccaatctcata 274  Q
    |||||| |||||| ||||||  ||| ||| ||||| |||||||||||| |||||||||   ||||| |||||||| || || |||||||||||    
T  31070017 atcgaggatgtgtcaaaacagtcagaaagatttacctataaaataagagtgtatatcaccaattaagtcatagttggggactccaatctcata 31070109  T

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Target: scaffold0018 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 274
Target Start/End: Complemental strand, 170767 - 170676
Alignment:
Q  183 atcgagtatgtgttaaaacaagcaggaaggtttacatataaaataagaatgtatatcaattattaactcatagtttggcacccaatctcata 274  Q
    ||||||||| ||||||||||   | |||||||||| |||||||||||| ||| ||||| |||||||| ||||||| || |||||||||||||    
T  170767 atcgagtatatgttaaaacatagaagaaggtttacctataaaataagagtgtgtatcacttattaacccatagttggggacccaatctcata 170676  T

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Target: scaffold0202 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 5015 - 4968
Alignment:
Q  210 aggtttacatataaaataagaatgtatatcaattattaactcatagtt 257  Q
    |||||||  |||||||||||| ||||||||| ||||||||||||||||    
T  5015 aggtttatctataaaataagagtgtatatcacttattaactcatagtt 4968  T

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