View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_39 (Length: 271)
Name: NF6636_low_39
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_39 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 3293077 - 3292816
Alignment:
| Q |
10 |
aagaatatcatctttcaaactatgttatggtcacaattttctgtcctagagaaccaactccaaatgtgacacttcctaattcaattcacctttattatcc |
109 |
Q |
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| T |
3293077 |
aagaaaatcatccttcaaactatgttatggtcacaattttctgtcctagagaaccaactccaaatgtgacacttcctaattcaattcacctttattatcc |
3292978 |
T |
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| Q |
110 |
atccatgaacacatggacaaatgttggtagaatccctggcctagttgatgaccaagtattaaagggcttttccatgatttcattaggagactttatttat |
209 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3292977 |
atccatgaacacatggacaaatgttggtagaattcctggcctagttgatgaccaagtattaaagggcttttccatgatttcattgggagactttatttat |
3292878 |
T |
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| Q |
210 |
ataattggtggccaaatttgtaacaaagaaaaagttcatgttaatgatgactcagctgaatt |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3292877 |
ataattggtggccaaatttgtaacaaagaaaaagttcatgttaatgatgactcagctgaatt |
3292816 |
T |
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