View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_40 (Length: 251)
Name: NF6636_low_40
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_40 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 31057272 - 31057031
Alignment:
| Q |
9 |
gaagaaaataatttattttttctgggtttgatctttttcaatgaaaatatttatttaaaggataagaagataaagcatccaagtgagaaaaaagaagatg |
108 |
Q |
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| T |
31057272 |
gaagaaaataatttattttttctaggtttgatctgtttcaatgaaaatatttatttaaaggataagaagataaaggatccaagtgaga-aaaagaagata |
31057174 |
T |
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| Q |
109 |
aagaaaatatttagtt---aaacataaatgtttttaaataacaagttaaattaagagaattaaaatattagtttaaagaccgt---nnnnnnnnnntcta |
202 |
Q |
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| T |
31057173 |
aagaaaatatttagttataatacataaacgttttcaaataacaag-----ttaagagaatt-aaatattagtctaaagattgtaaaaaaaaaaaaatcta |
31057080 |
T |
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| Q |
203 |
aaaggaaggaccataagattttttatcaacccaacattaaagcacaaaa |
251 |
Q |
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| T |
31057079 |
aaaggaaggaccgtaagattttttatcaacccaacattaaagcgcaaaa |
31057031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 31111254 - 31111161
Alignment:
| Q |
9 |
gaagaaaataatttattttttctgggtttgatcttttt-caatgaaaatatttatttaaaggataagaagataaagcatccaagtgagaaaaaa |
101 |
Q |
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| T |
31111254 |
gaagaaaattatttattttttctaggttgtattttttttcaatgaaaatatttatttaaaaaataagaagataaaggacccaagtaagaaaaaa |
31111161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 31111096 - 31111068
Alignment:
| Q |
141 |
aaataacaagttaaattaagagaattaaa |
169 |
Q |
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| T |
31111096 |
aaataacaagttaaattaagagaattaaa |
31111068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 15405 - 15511
Alignment:
| Q |
9 |
gaagaaaataatttattttttctgggtttgatcttttt-caatgaaaatatttatttaaaggataagaagataaagcatccaagtgagaaaaaagaagat |
107 |
Q |
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||||||||||||||| ||||||| || | ||| ||||| | |||||||||||||||| ||||||||||| |||||| | |||||| |||||||| || || |
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| T |
15405 |
gaagaaaataatttagtttttctaggatagattttttttctatgaaaatatttatttgaaggataagaaaataaagaacccaagtaagaaaaaaaaatat |
15504 |
T |
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| Q |
108 |
gaagaaa |
114 |
Q |
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|||||| |
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| T |
15505 |
aaagaaa |
15511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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