View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_41 (Length: 244)
Name: NF6636_low_41
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 43230343 - 43230111
Alignment:
| Q |
1 |
ttccattttttctttatttcgtaatttgcttcagataaaacacccaacatattgtaaacacttgtatttacaatctgcaagaagaaaattttcaaatgta |
100 |
Q |
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| T |
43230343 |
ttccattttttctttatttcgtaatttgcttcagataaaacaccctacatattgtaaacacttgtatttacaatctgcaagaagaaaattttcaaatgta |
43230244 |
T |
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| Q |
101 |
gagtaaaacaccctacatattgaatataatgcgggatacatttactcaagatcattgaaaaaaccaatgtagatatgataaggcatttattacgccagat |
200 |
Q |
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| T |
43230243 |
gagtaaaacaccctacatattgaatataatgcgggatacatttactcaagatcattgaaaaaaccaatgtagatatgataaggcatttattacgccagat |
43230144 |
T |
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| Q |
201 |
tttatattatgatatttaacacttaagttgatg |
233 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
43230143 |
tttatattatgacatttaacacttaagttgatg |
43230111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 43240945 - 43240874
Alignment:
| Q |
119 |
attgaatataatgcgggatacatttactcaagatcattgaaaaaaccaatgtagatatgataaggcatttat |
190 |
Q |
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| T |
43240945 |
attgaatataatacgggagacatttatttaagatcatcgaaaaagccaatgtagatatgataaggcatttat |
43240874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 43246942 - 43246890
Alignment:
| Q |
142 |
ttactcaagatcattgaaaaaaccaatgtagatatgataaggcatttattacg |
194 |
Q |
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| T |
43246942 |
ttactcaagatcttcgaaaaagccaatgtagatatgataaggcatgtattacg |
43246890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 43253407 - 43253355
Alignment:
| Q |
142 |
ttactcaagatcattgaaaaaaccaatgtagatatgataaggcatttattacg |
194 |
Q |
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| T |
43253407 |
ttactcaagatcttcgaaaaagccaatgtagatatgataaggcatgtattacg |
43253355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 43235735 - 43235683
Alignment:
| Q |
68 |
ttacaatctgcaagaagaaaattttcaaatgtagagtaaaacaccctacatat |
120 |
Q |
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||||| |||||||||||||| |||||||||| ||||||| ||||||||||| |
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| T |
43235735 |
ttacattctgcaagaagaaataattcaaatgtaaagtaaaataccctacatat |
43235683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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