View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_51 (Length: 204)
Name: NF6636_low_51
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_51 |
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| [»] chr5 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 204
Target Start/End: Complemental strand, 15284726 - 15284534
Alignment:
| Q |
12 |
atgaatgaaagacacaaccaataatgtacttgtctcgtatacaatcatcggctaatcattcacaagtatacacattaactcataagatattctaatcgtt |
111 |
Q |
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| T |
15284726 |
atgaatgaaagacacagtcaataatgtacttttatcgtatacaatcatcgactaatcattcacaagtatacacattaacacataagatattctaatcgtt |
15284627 |
T |
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| Q |
112 |
ttccccattctttacgtatccggatcatctcctcgaggatccaattttcttcttcatcatctccaaaataatctcattccaagtatctatagg |
204 |
Q |
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| T |
15284626 |
ttcccccttctttacgtatccggatcatctcctcgatgatccagatttcttcttcatcatctccaacaaaatctcattccaagtatctatagg |
15284534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 15263089 - 15263045
Alignment:
| Q |
160 |
cttcttcatcatctccaaaataatctcattccaagtatctatagg |
204 |
Q |
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| T |
15263089 |
cttcttcatcatctctagaaaaatctcattccaagtatctatagg |
15263045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 15287339 - 15287381
Alignment:
| Q |
162 |
tcttcatcatctccaaaataatctcattccaagtatctatagg |
204 |
Q |
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| T |
15287339 |
tcttcatcatctctacaaaaatctcattccaagtatctatagg |
15287381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 11806900 - 11806944
Alignment:
| Q |
160 |
cttcttcatcatctccaaaataatctcattccaagtatctatagg |
204 |
Q |
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| T |
11806900 |
cttcttcatcatctccaaaaaaatctcattccaagtatcaatagg |
11806944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 51383763 - 51383719
Alignment:
| Q |
160 |
cttcttcatcatctccaaaataatctcattccaagtatctatagg |
204 |
Q |
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| T |
51383763 |
cttcttcatgatctccaaaaaaatctcattccaagtgtctatagg |
51383719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 44247983 - 44248026
Alignment:
| Q |
161 |
ttcttcatcatctccaaaataatctcattccaagtatctatagg |
204 |
Q |
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||||||||||||| ||||| ||||||||||||| |||||||||| |
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| T |
44247983 |
ttcttcatcatctgcaaaaaaatctcattccaaatatctatagg |
44248026 |
T |
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