View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_6 (Length: 607)
Name: NF6636_low_6
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_6 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 572; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 18 - 601
Target Start/End: Complemental strand, 37119693 - 37119110
Alignment:
| Q |
18 |
acttgatactgatgctcctttctcagttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119693 |
acttgatactgatgctcctttctcagttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacg |
37119594 |
T |
|
| Q |
118 |
gttttgttggttagtgcggttggtcaagctcgttatttaacacacattgcgcgtactcacatgatgccaccttggtttgctcttgttgatgaaagaacag |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119593 |
gttttgttggttagtgcggttggtcaagctcgttacttaacacacattgcacgtactcacatgatgccaccttggtttgctcttgttgatgaaagaacag |
37119494 |
T |
|
| Q |
218 |
gaacacctatgaatgctacgatctcaatgcttattgctactgctatcgttgctttcttcaccaatcttagtattctatctagccttttgtcgatttctac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119493 |
gaacacctatgaatgctacgatctcaatgcttattgctactgctatcgttgctttcttcaccaatcttagtattctatctagccttttgtcgatttctac |
37119394 |
T |
|
| Q |
318 |
tttgtttatcttttcacttgtggcattggcacttctagtaaggagatattattcaagtggggtaactacaaaaaggaaccaagtaaatctcattgtgtgt |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119393 |
tttgtttatcttttcacttgtggcattggcacttctagtaaggagatattattcaagtggggtaactacaaaaaggaaccaagtaaatctcattgtgtgt |
37119294 |
T |
|
| Q |
418 |
attttgttgattattggatcttcaattggaatttcagcttattgggctaatagtagtgagcataagtggattggatatacaatctttgttccattgtggt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119293 |
attttgttgattattggatcttcaattggaatttcagcttattgggctaatagtagtgagcataagtggattggatatacaatctttgttccattgtggt |
37119194 |
T |
|
| Q |
518 |
ttttagggacaggtgctctttggctttttgttccaatggcaaagaagcctaagttatggggagttcctttggttcctttgctac |
601 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37119193 |
ttttagggacaggtgctctttggctttttgttccaatggcaaagaagcctaagttatggggagttcctttggttccttggctac |
37119110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 27 - 601
Target Start/End: Complemental strand, 37111429 - 37110858
Alignment:
| Q |
27 |
tgatgctcctttctcagttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacggttttgttg |
126 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
37111429 |
tgatgctcctttctctgttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggcgctttaaaaggaatgacaacggttttgttg |
37111330 |
T |
|
| Q |
127 |
gttagtgcggttggtcaagctcgttatttaacacacattgcgcgtactcacatgatgccaccttggtttgctcttgttgatgaaagaacaggaacaccta |
226 |
Q |
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||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
37111329 |
gttggtgctgttggtcaagctcgttatttaactcacattgcacgtactcacatgatgccgccttggtttgctcatgttgatgaaagaacaggaacaccta |
37111230 |
T |
|
| Q |
227 |
tgaatgctacgatctcaatgcttattgctactgctatcgttgctttcttcaccaatcttagtattctatctagccttttgtcgatttctactttgtttat |
326 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||||||||||||| ||| ||||| | |||||||| | ||| ||||||||| ||||||||||||| |
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| T |
37111229 |
tgaatgctacaatctcaatgcttgcagcgactgctatcgttgctttctttaccgatcttgggattctatcgaacctcttgtcgattgctactttgtttat |
37111130 |
T |
|
| Q |
327 |
cttttcacttgtggcattggcacttctagtaaggagatattattcaagtggggtaactacaaaaaggaaccaagtaaatctcattgtgtgtattttgttg |
426 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
37111129 |
cttttcgcttgtggcattggcacttctagtgaggagatattattcaagtgaggtaactacaaaagggaaccaagtaaatctcattgtgtgtcttgtgttg |
37111030 |
T |
|
| Q |
427 |
attattggatcttcaattggaatttcagcttattgggctaatagtagtgagcataagtggattggatatacaatctttgttccattgtggtttttaggga |
526 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37111029 |
attattggatcttcaattggactttcagcttcttgggctaa---cagtgagcatggatggattggatacgcaatctttgttccattgtggtttttaggga |
37110933 |
T |
|
| Q |
527 |
caggtgctctttggctttttgttccaatggcaaagaagcctaagttatggggagttcctttggttcctttgctac |
601 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
37110932 |
caggtgctctttggctttttgttccaatggcaaagaagcctaaactatggggagttcctttggttccttggctac |
37110858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 43 - 314
Target Start/End: Original strand, 37136585 - 37136856
Alignment:
| Q |
43 |
gttgcttttagtgctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacggttttgttggttagtgcggttggtc |
142 |
Q |
| |
|
||||| |||||| |||||||| || |||||||| ||||||||| |||| || || ||||| |||||||| || ||||||||||||| || || ||| |
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| T |
37136585 |
gttgcatttagttctgttggatggggatgggctaaatacattgttgcattgggagcattgaagggaatgacgactgttttgttggttaatgttgtcggtg |
37136684 |
T |
|
| Q |
143 |
aagctcgttatttaacacacattgcgcgtactcacatgatgccaccttggtttgctcttgttgatgaaagaacaggaacacctatgaatgctacgatctc |
242 |
Q |
| |
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| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||| |||| | ||| || |||||| |||||||||| || | |
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| T |
37136685 |
cctcacgttatttaactcacattgctcgtactcacatgatgcctccttggtttgctcttgttcatgagaaaaccgggacacctttgaatgctacaattgc |
37136784 |
T |
|
| Q |
243 |
aatgcttattgctactgctatcgttgctttcttcaccaatcttagtattctatctagccttttgtcgatttc |
314 |
Q |
| |
|
|||| ||| |||||| || | ||||| || ||||| ||||| ||||||| || | ||| ||||||||||| |
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| T |
37136785 |
aatggttacagctacttctgtggttgcatttttcactgatcttcgtattctttcaaacctattgtcgatttc |
37136856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 364 - 441
Target Start/End: Original strand, 37136906 - 37136983
Alignment:
| Q |
364 |
tattattcaagtggggtaactacaaaaaggaaccaagtaaatctcattgtgtgtattttgttgattattggatcttca |
441 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||| || |||||||| ||| || | |||||||||||||||||| |
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| T |
37136906 |
tattattcaactggggtaactacaaaagataatcaagttaagctcattgtatgtgttgttttgattattggatcttca |
37136983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 496 - 601
Target Start/End: Original strand, 29258661 - 29258766
Alignment:
| Q |
496 |
acaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaagcctaagttatggggagttcctttggttcctt |
595 |
Q |
| |
|
||||| |||||||||||||||||||| || || |||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| | ||||| ||| |
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| T |
29258661 |
acaatttttgttccattgtggttttttggaaccggtggtctttggctttgtgttccaatggcaaagaagcctaaattatggggagttcatgtggtttctt |
29258760 |
T |
|
| Q |
596 |
tgctac |
601 |
Q |
| |
|
|||||| |
|
|
| T |
29258761 |
tgctac |
29258766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 496 - 569
Target Start/End: Original strand, 2991 - 3064
Alignment:
| Q |
496 |
acaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaagcctaa |
569 |
Q |
| |
|
||||| |||||||||||||||||||| || || |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
2991 |
acaatttttgttccattgtggttttttggaaccggtggtctttggctttgtgttccaatggcaaagaagcctaa |
3064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 10681104 - 10681195
Alignment:
| Q |
55 |
gctgttggaatggattgggctaagtacattgtttcattaggtgctttgaaaggaatgacaacggttttgttggttagtgcggttggtcaagc |
146 |
Q |
| |
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|||||||||||| | ||||||||||| |||||| |||| ||||| |||||||||||||| | ||||| | ||| |||| ||||||||||| |
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| T |
10681104 |
gctgttggaatgaaatgggctaagtatattgttgcatttggtgcattgaaaggaatgactagtgttttacttgttggtgctgttggtcaagc |
10681195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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