View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6636_low_8 (Length: 555)
Name: NF6636_low_8
Description: NF6636
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6636_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 289
Target Start/End: Complemental strand, 46276437 - 46276166
Alignment:
| Q |
14 |
caaaggaaaagataagattgcatagcatagcatatagaatagaatagctaggagtcctttatatggctggtttgtatttagcagcaaagaaagagaccaa |
113 |
Q |
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| T |
46276437 |
caaaggaaaagataagattgcatagcatagcatatagaatagaatagctaggagtcctttatatggctggtttgtatttagcagcaaagaaagataccaa |
46276338 |
T |
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| Q |
114 |
attttatactgtatttgttcagagtatcaactgcactgccactccctctcgtgtggtgtggctgatttgtgtcttcttatttctaccaaagaaagaatct |
213 |
Q |
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| T |
46276337 |
attttatactgtatttgttcagagtatcaactgcactgccactccctctcgtgtggtgtggctgatttgtgtcttcttatttctaccaaagaaagaatct |
46276238 |
T |
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| Q |
214 |
ataaagtttcaatttcacaacaggaataattttcannnnnnnncttctaaatttcctgttaaataataagaattta |
289 |
Q |
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| T |
46276237 |
ataaagtttcaatttcacaacagg---aattttca-tttttttcttctaaatttcctgttaaataataataattta |
46276166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 336 - 537
Target Start/End: Complemental strand, 46276052 - 46275855
Alignment:
| Q |
336 |
aaatgcattgggacgcaagaaactagggttaaacgcttatctaagcattgtgtaacttgtgacttgtaaggggtactgcaatacaacaaatattccaacc |
435 |
Q |
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| T |
46276052 |
aaatgcattgggacgcaagaaactagggttaaacgcgtatctaagcattgtgtaatttgtgacttgtaaggggtactgcaatacaacaaatattccaacc |
46275953 |
T |
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| Q |
436 |
ttttacacaatagaactttagacatcctataaatcaagataatatatagactacaacaccagccagaagcccataatattttggagtggtatgcctaaga |
535 |
Q |
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| T |
46275952 |
ttttacacaatagaactttagacatcctataaatcaagata----atagactacaacaccagccagaagcccataatatgttggagtggtatgcctaaga |
46275857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 337
Target Start/End: Complemental strand, 46276133 - 46276082
Alignment:
| Q |
286 |
tttagattatacggtgagatgttattcgaacgcacgaatactcagaagctaa |
337 |
Q |
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| T |
46276133 |
tttagattatacggtgagatgttattcgaacgcacgaatactcagaagctaa |
46276082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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