View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6637_high_11 (Length: 269)
Name: NF6637_high_11
Description: NF6637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6637_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 31 - 260
Target Start/End: Original strand, 32100105 - 32100330
Alignment:
| Q |
31 |
tagtatgtcttaaatattgtatcacctatcacacaattaatgacacaacagtttgaaaaatgactcatcaaaagattaaagtgtacttgaatccatggat |
130 |
Q |
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| T |
32100105 |
tagtatgtcttaaatattgtatcacctatcacacaattaatgacacaacagtttgaaaaatgactcatcaaaagattaaagtgtacttgaatccatggat |
32100204 |
T |
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| Q |
131 |
gttagtattttgccggtggtacatcnnnnnnnnnnnnnnnnnnngtacctaaatttgtttaggttgtcatatagtataaggccctgtatttaatactacc |
230 |
Q |
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| T |
32100205 |
gttagtattttgccggtggtacatc----aataataataatatagtacctaaatttgtttaggttgtcatatagtataaggccctgtatttaatactacc |
32100300 |
T |
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| Q |
231 |
aacttattttatcctacttgagagaataat |
260 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
32100301 |
aacttattttatcctacttgagagaataat |
32100330 |
T |
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