View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6637_high_9 (Length: 288)
Name: NF6637_high_9
Description: NF6637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6637_high_9 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 5 - 288
Target Start/End: Original strand, 3842138 - 3842421
Alignment:
| Q |
5 |
tgtccaataatatgtattctctttacatatagtatagatatatcttcgaaaaatgctaacaagtgtcctcttttttctaaagaacctaacaggtgtcctt |
104 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3842138 |
tgtccaaaaatatgtattctctttacctatagtatagatatatcttcgaaaaatgctaacaagtgtcctcttttttctaaagaagctaacaggtgtcctt |
3842237 |
T |
|
| Q |
105 |
gttataactataattatattcctacttgtattaaagacattttagtatggatgaaatgaagtaatttatgggattgagaggtattcattttaccagctct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3842238 |
gttataactataattatattcctacttgtattaaagacattttagtatggatgaaatgaagtaatttatgggattgagaggtattcattttaccagctct |
3842337 |
T |
|
| Q |
205 |
nnnnnnngattcattttcctcattgcgtttaccttttccaaaataaagttataggcatcaccacaaatccaattcaatcccagc |
288 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3842338 |
aaaaaaagattcattttcctcatttcttttaccttttccaaaataacgttataggcatcaccacaaatccaattctatcccagc |
3842421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University