View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6637_low_1 (Length: 458)
Name: NF6637_low_1
Description: NF6637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6637_low_1 |
 | |
|
| [»] scaffold1408 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 16 - 448
Target Start/End: Original strand, 33644539 - 33644971
Alignment:
| Q |
16 |
agaatgacgatgtctggatttcaggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgataca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644539 |
agaatgacgatgtctggatttcaggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgataca |
33644638 |
T |
|
| Q |
116 |
attcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644639 |
attcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagt |
33644738 |
T |
|
| Q |
216 |
gtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccac |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33644739 |
gtgggttattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccac |
33644838 |
T |
|
| Q |
316 |
gtcgtaggcgggttccatcgtcaaccattatggaactagtttttcctaaggattcctatatgaatttttggaaaataagtgttccagtaattctcgatgg |
415 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33644839 |
gtcgtaggcgggttccatcgtcgaccattatggaactagttttacctaagaattcctatatgaatttttggagaataagtgttccagtaattctcgatgg |
33644938 |
T |
|
| Q |
416 |
tggtcttattacgaccaaatcaagtcacctatg |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
33644939 |
tggtcttattacgaccaaatcaagtcacctatg |
33644971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 37 - 313
Target Start/End: Complemental strand, 33304472 - 33304196
Alignment:
| Q |
37 |
caggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctaca |
136 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||| ||| |
|
|
| T |
33304472 |
caggattgttcattttcaactgtccaaaattgggtgagagggaacgttgcagtagcatgacattttcatggttgacacaattcattgaggcaaactcaca |
33304373 |
T |
|
| Q |
137 |
atcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaata |
236 |
Q |
| |
|
||||||||| || | ||||||| ||| ||||||||| |||||||||| ||||||||||| ||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
33304372 |
atcctaccctacgtcctttgattggattcaaattgttactccaggaaatgaaataccaatttggatcaacaataagagcgtgggtgattcaatacaaata |
33304273 |
T |
|
| Q |
237 |
gacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
313 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||||| |||||||||| |
|
|
| T |
33304272 |
gaccgatctcctattatgcatgacaataacaattatatcattggctttctatgttgtgcggtattttccatggcacc |
33304196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 37 - 313
Target Start/End: Complemental strand, 33262614 - 33262338
Alignment:
| Q |
37 |
caggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctaca |
136 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||| ||| ||| ||| |
|
|
| T |
33262614 |
caggattggtcattttcaactgtccaaaattgggtgagagggaacgttgcagtagcatgacattttcatggacgacacaattcattcaagcataccaaca |
33262515 |
T |
|
| Q |
137 |
atcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaata |
236 |
Q |
| |
|
||||||||| || || || ||| | ||||||||| | |||||||| ||||||||||||||||||||||||||| || ||||||||||||||| | || |
|
|
| T |
33262514 |
atcctaccctacttatttggatgagtttcaaattgttagtccaggaaatgaaataccaagttggatcaacaatcagagcatgggtgattcaataccagta |
33262415 |
T |
|
| Q |
237 |
gacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
313 |
Q |
| |
|
||| || |||||||||||||||| |||||||||||||||||||| ||| ||||||||| |||||| ||||| |||| |
|
|
| T |
33262414 |
gaccaaactcctattatgcatgataataacaataatatcattggctttctatgttgtgttgtattttccatgacacc |
33262338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 37 - 309
Target Start/End: Complemental strand, 33388142 - 33387870
Alignment:
| Q |
37 |
caggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctaca |
136 |
Q |
| |
|
|||||||| || ||||||||||| ||||| ||||||| ||||| ||||||| |||||||||||||||||||||| |||||| ||| ||||||||| ||| |
|
|
| T |
33388142 |
caggattgatcgttttcaactgtccaaaactgggtgatagggagtgttgcagtagcatgacattttcatggatgacacaatttattaaggcaaaccgaca |
33388043 |
T |
|
| Q |
137 |
atcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaata |
236 |
Q |
| |
|
| ||||||| |||| ||||||| || ||||||||| ||| |||||||||||||||| ||||||||||||||||| || ||||||||||||||| |||| |
|
|
| T |
33388042 |
aacctaccctgcctattttgatacgattcaaattgttactacaggaagtgaaataccgagttggatcaacaatcagagcatgggtgattcaatactaata |
33387943 |
T |
|
| Q |
237 |
gacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatgg |
309 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
33387942 |
gacaaattgcctattatgcatgacaataacaataatatcattggctttctatgttgtgcagtatttacaatgg |
33387870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 33399063 - 33398788
Alignment:
| Q |
16 |
agaatgacgatgtctggatttcaggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgataca |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
33399063 |
agaatgacgatgactggatttcaggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcagtagcatgacattttcatggatgataca |
33398964 |
T |
|
| Q |
116 |
attcattcaggcaaacctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagt |
215 |
Q |
| |
|
|||||||| ||| || | ||||||| |||| |||||||||| | |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33398963 |
attcattctggccaatccacaatcc------acct------------ctcaaattgttattccaggaagtgaaataccaagttggatcaacaatcagtgt |
33398882 |
T |
|
| Q |
216 |
gtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatgg |
309 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| ||||||||| | | | | |||||||||||||||||||||||||||| |
|
|
| T |
33398881 |
gtgggtgattcaatacaaatagacctatctcctgctatgcatgataataacaatcagagccattactttgtatgttgtgcagtatttaccatgg |
33398788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 41 - 313
Target Start/End: Complemental strand, 33285581 - 33285306
Alignment:
| Q |
41 |
attggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcc |
140 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||||||| |||||| ||| ||| | |
|
|
| T |
33285581 |
attggtcattttcaactgtccaaaattaggtgaaagggaacgttgcagtagcatggcattttcatggatgatacaattcatccaggcataccaacacttt |
33285482 |
T |
|
| Q |
141 |
tacccaacctactt---tgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatag |
237 |
Q |
| |
|
||||| | | ||| ||| ||| ||| ||||| ||||||||||||||||||||||||||||| || ||||| || |||||| |||||||| ||||| |
|
|
| T |
33285481 |
taccctgcgtccttatttgaagggattcatattgttactccaggaagtgaaataccaagttggattaataatcagagcgtgggtagttcaataccaatag |
33285382 |
T |
|
| Q |
238 |
acgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
313 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| || ||||||| |
|
|
| T |
33285381 |
acagatctcctattatgcatgacaataacaataatatcattggctttgtatgttgtgcagtgttttccgtggcacc |
33285306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 37 - 313
Target Start/End: Complemental strand, 9166740 - 9166473
Alignment:
| Q |
37 |
caggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctaca |
136 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||| | ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||| || |
|
|
| T |
9166740 |
caggattggtcattttcaactgtccagaattgagtgataaggaacattgcagtagcatgacattttcatggatgatgcaatttattcaggcaaacccacc |
9166641 |
T |
|
| Q |
137 |
atcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaata |
236 |
Q |
| |
|
|||| || |||||||||| ||||||||| || ||||||| |||||||||||||||||||||||||| || |||| || ||| |||| |||| |
|
|
| T |
9166640 |
atcccac---------tttgataggattcaaattgttacgccaggaattgaaataccaagttggatcaacaatcggagcgtggatggttcgataccaata |
9166550 |
T |
|
| Q |
237 |
gacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
313 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
9166549 |
gacctaactcctattatgcatgacaataacaataatatcattggctttgtatgttgtgcagtattctccatggcacc |
9166473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 37 - 294
Target Start/End: Original strand, 28870189 - 28870446
Alignment:
| Q |
37 |
caggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctaca |
136 |
Q |
| |
|
|||| ||| |||||||||||||| |||| || ||||||||||||||||| | |||||| ||||||||||||||| ||||||||||| |||| ||| ||| |
|
|
| T |
28870189 |
caggtttgatcattttcaactgtccaaatttaggtgagagggaacgttgttgtagcatggcattttcatggatgaaacaattcattcgggcataccgaca |
28870288 |
T |
|
| Q |
137 |
atcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaata |
236 |
Q |
| |
|
|||||||| ||| || ||| | | | ||||| ||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||||| |
|
|
| T |
28870289 |
atcctaccttgtctatttggatgcgtttaatattgttactccaggaagtgaaataccaagttggattaacaatcagagcatgggtggttcaatacaaata |
28870388 |
T |
|
| Q |
237 |
gacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtg |
294 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
28870389 |
gacgaatctcctattataaatgacaataacaataatatcattggctttgtatgttgtg |
28870446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 37 - 313
Target Start/End: Complemental strand, 33057554 - 33057290
Alignment:
| Q |
37 |
caggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctaca |
136 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||| ||||||||| || |
|
|
| T |
33057554 |
caggattgctcattttcaactgtccaaaattgggtgagagggaacattgcaggagcatgacacttttatggatgaaacaattcattaaggcaaacccacg |
33057455 |
T |
|
| Q |
137 |
atcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaata |
236 |
Q |
| |
|
|||| || || ||| |||||| || | |||||||||||||||||||||||||||||||||||| || ||||| |||||||| |||| |
|
|
| T |
33057454 |
ttcct-------cttctgagat-----tcaaatagttaatccaggaagtgaaataccaagttggatcaacaatcagaggatgggttattcaatagcaata |
33057367 |
T |
|
| Q |
237 |
gacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
313 |
Q |
| |
|
||| ||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
33057366 |
gaccgatctcctattaggcatgacaatgacaataatatcattggtattgtatgttgtgcagcatttacgatggcacc |
33057290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 38 - 313
Target Start/End: Complemental strand, 33409959 - 33409690
Alignment:
| Q |
38 |
aggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaa |
137 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||| ||| ||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
33409959 |
aggattgttcattttcaactgtccaaaattggttgagagggaacgttgcagtagcatcacaatttcatggatggcacatttcattcaggcaaaccaacaa |
33409860 |
T |
|
| Q |
138 |
tcctacccaacctactttgataggact-caaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaata |
236 |
Q |
| |
|
|||||| | ||| | || ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||| |
|
|
| T |
33409859 |
-----cccaacaaa--ttgtcggcgcttcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcagagcgtgggtgcttcaatatcaatt |
33409767 |
T |
|
| Q |
237 |
gacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
313 |
Q |
| |
|
|| ||||||||| |||| ||||||||||||||||||| ||||| |||||| |||||| | || || |||||||||| |
|
|
| T |
33409766 |
gatgaatctcctgttataaatgacaataacaataatattattggctttgtaagttgtgtattaatttccatggcacc |
33409690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 37 - 302
Target Start/End: Original strand, 31562838 - 31563109
Alignment:
| Q |
37 |
caggattggtcattttcaactgttcaaaattgg------gtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaa |
130 |
Q |
| |
|
|||||||||||||||| |||||| | ||||||| |||||||||| | |||||||||||||||||||||||||||| |||||||||| ||||| | |
|
|
| T |
31562838 |
caggattggtcatttttaactgtccgaaattggctgagagtgagagggagcattgcaggagcatgacattttcatggatggcacaattcattaaggcata |
31562937 |
T |
|
| Q |
131 |
cctacaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaata |
230 |
Q |
| |
|
| ||| |||||||| |||| || ||| | ||| ||||| |||||||||||||||||| | ||||||||||||||| || |||||||||||||| |
|
|
| T |
31562938 |
tccacactcctaccctgcctatttggatgagtttcatattgttgttccaggaagtgaaataccgaattggatcaacaatcatagcatgggtgattcaata |
31563037 |
T |
|
| Q |
231 |
caaatagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtattt |
302 |
Q |
| |
|
| |||||| |||||| |||||||||||||| |||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
31563038 |
ccaatagagttctctcctcctatgcatgacaatatcaatgatatcattggctttgtatgttgtgcagtattt |
31563109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 238
Target Start/End: Complemental strand, 33271785 - 33271582
Alignment:
| Q |
32 |
gatttcaggattggtcattttcaactgttcaaaattgg------gtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcag |
125 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |
|
|
| T |
33271785 |
gattacaggattggtcattttcaactgtccaaaattggctgactgtgagagggaacgttgcagtagcttgacattttcatggatgatacaattcattatg |
33271686 |
T |
|
| Q |
126 |
gcaaacctacaatcctacccaacctactttgatag-gactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgat |
224 |
Q |
| |
|
||||||| ||||| || ||||| | | ||| ||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
33271685 |
gcaaacccgcaatctta----------tttgaatgagtttcatattataactccaggaagtgaaataccaagttggatcaacaatcagagcatgggtgat |
33271596 |
T |
|
| Q |
225 |
tcaatacaaataga |
238 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
33271595 |
tcgataccaataga |
33271582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 242 - 445
Target Start/End: Complemental strand, 33358716 - 33358513
Alignment:
| Q |
242 |
atctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgtcaacc |
341 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |||| | | | || ||||| ||| || |
|
|
| T |
33358716 |
atctcctattaggcatgacaataacaataatgtcattggttttgtatgttgtgcagtattttccatgacacctcagcatgggtattttccaccgtggtcc |
33358617 |
T |
|
| Q |
342 |
attatggaactagtttttcctaaggattcctatatgaatttttggaaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtc |
441 |
Q |
| |
|
|||||||||| ||| ||| |||||| ||| | ||| ||||||| |||||||||||||||||| |||| |||||||||||| |||||||||||| |
|
|
| T |
33358616 |
cttatggaactgactttaactacagattccaatagtattttgaggaaaatgagtgttccagtaattctcaatggaggtcttattacgcccaaatcaagtc |
33358517 |
T |
|
| Q |
442 |
acct |
445 |
Q |
| |
|
|||| |
|
|
| T |
33358516 |
acct |
33358513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 203
Target Start/End: Complemental strand, 33358849 - 33358714
Alignment:
| Q |
72 |
gagagggaacgttgcaggagcatgacattttcatggatgatacaattcattca----ggcaaacctacaatcctacccaacctactttgataggactcaa |
167 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||| |||||||||||| |||||||| || ||||||||| ||| ||| |||| | |||| |
|
|
| T |
33358849 |
gagagggaacgttgcagtagcatgacactttcatggatgaaacaattcattcattctggcaaacccaccatcctaccctgactattttcatagcattcaa |
33358750 |
T |
|
| Q |
168 |
attgtaactccaggaagtgaaataccaagttggatc |
203 |
Q |
| |
|
|| || ||||||||||||||||| | |||||||||| |
|
|
| T |
33358749 |
atagttactccaggaagtgaaatgctaagttggatc |
33358714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 448
Target Start/End: Complemental strand, 33387810 - 33387749
Alignment:
| Q |
387 |
aaaataagtgttccagtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
448 |
Q |
| |
|
||||| ||||||||||| |||||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
33387810 |
aaaatgagtgttccagtcattctcaatggaggtcttgttacgaccaaatcaagtcacctatg |
33387749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 28870548 - 28870594
Alignment:
| Q |
402 |
gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
448 |
Q |
| |
|
|||||| ||||| | | |||||||||||||||||||||||||||||| |
|
|
| T |
28870548 |
gtaattatcgatagagatcttattacgaccaaatcaagtcacctatg |
28870594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 448
Target Start/End: Complemental strand, 33271447 - 33271417
Alignment:
| Q |
418 |
gtcttattacgaccaaatcaagtcacctatg |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33271447 |
gtcttattacgaccaaatcaagtcacctatg |
33271417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 33304119 - 33304073
Alignment:
| Q |
402 |
gtaattctcgatggtggtcttattacgaccaaatcaagtcacctatg |
448 |
Q |
| |
|
||||||||| |||| |||||| ||| ||||||||||||||||||||| |
|
|
| T |
33304119 |
gtaattctcaatggaggtcttgttatgaccaaatcaagtcacctatg |
33304073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1408 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold1408
Description:
Target: scaffold1408; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 38 - 313
Target Start/End: Complemental strand, 631 - 356
Alignment:
| Q |
38 |
aggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaa |
137 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||| || ||||| |||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
631 |
aggattggtcattttcaactgtccaaaattgggtgagagggaatgttgtagtagcataacattttcatggatgaaacaattcattcaggcaaaccaacaa |
532 |
T |
|
| Q |
138 |
tcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatag |
237 |
Q |
| |
|
|||||| | || || || | ||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| ||||| |
|
|
| T |
531 |
tcctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatag |
432 |
T |
|
| Q |
238 |
acgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
313 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
431 |
acgaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacc |
356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 38 - 313
Target Start/End: Complemental strand, 6377 - 6102
Alignment:
| Q |
38 |
aggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaa |
137 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||| || ||||| |||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
6377 |
aggattggtcattttcaactgtccaaaattgggtgagagggaatgttgtagtagcataacattttcatggatgaaacaattcattcaggcaaaccaacaa |
6278 |
T |
|
| Q |
138 |
tcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatag |
237 |
Q |
| |
|
|||||| | || || || | ||||||||| ||||||||||||||||||||||| |||||||||||||| || |||||| |||||||| ||||| |
|
|
| T |
6277 |
tcctacggtccgtatttgtatgagcttcaaattgttactccaggaagtgaaataccaagctggatcaacaatcagagcatgggtggttcaatactaatag |
6178 |
T |
|
| Q |
238 |
acgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
313 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
6177 |
acgaatctcctgttatacatgacaataagaataatatcattggctttgtattttgtgcagtattttgcatggcacc |
6102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 38 - 302
Target Start/End: Original strand, 31479029 - 31479293
Alignment:
| Q |
38 |
aggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaa |
137 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31479029 |
aggattgttcattttcaactgtcctaaattgggtgaaacggaacgttggagtagcatgacattttcatggatgatacaattcattcaggcaaaccgacaa |
31479128 |
T |
|
| Q |
138 |
tcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatag |
237 |
Q |
| |
|
| || || || || ||||||| ||||||||| |||||||| |||||||| ||||||||| |||||||||| || |||| ||| ||||| ||||| |
|
|
| T |
31479129 |
ttctcccatgactcctctgatagggttcaaattgttactccaggtagtgaaatgccaagttggttcaacaatcagagcaagggtaatttaatacgaatag |
31479228 |
T |
|
| Q |
238 |
acgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtattt |
302 |
Q |
| |
|
| ||||| |||||||| |||||||||||||||||| |||| | ||||||||||| ||||||| |
|
|
| T |
31479229 |
attcttctccgattatgcacgacaataacaataatatcgttggctgtgtatgttgtgtagtattt |
31479293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 37 - 302
Target Start/End: Original strand, 31472567 - 31472835
Alignment:
| Q |
37 |
caggattggtcattttcaactgttcaaaattgggtgagagggaac---gttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacct |
133 |
Q |
| |
|
|||||||| |||||||||||||| | || |||||||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
31472567 |
caggattgctcattttcaactgtcctaatttgggtgagagggaacattgttgcactaacatgacattttcatggatgatacaactcattcaggcaaatcc |
31472666 |
T |
|
| Q |
134 |
acaatcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaa |
233 |
Q |
| |
|
|||||||| ||| || | ||||| | ||| ||||| ||||||||||||||||||||||||||| |||||||||| | ||||||||| |||| | |
|
|
| T |
31472667 |
acaatccttccctgactgttatgatataattcagattgttactccaggaagtgaaataccaagttggttcaacaatcagaacaagggtgattcgatacga |
31472766 |
T |
|
| Q |
234 |
atagacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtattt |
302 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||| | | ||||||||| ||||||| |
|
|
| T |
31472767 |
ttagactcatctcccattatgcatgacaataacaataatatcattggttgtatatgttgtgtagtattt |
31472835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 168 - 313
Target Start/End: Original strand, 31499206 - 31499351
Alignment:
| Q |
168 |
attgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataaca |
267 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| | || ||||| || |||||||||||||| ||||||| |||||| ||||| ||||||||||||| |
|
|
| T |
31499206 |
attgttactccaggaagtgaaatatcaagttggtttaagaatcagagcaagggtgattcaatacgaatagactcatctcccattatccatgacaataaca |
31499305 |
T |
|
| Q |
268 |
ataatatcattggatttgtatgttgtgcagtatttaccatggcacc |
313 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
31499306 |
ataatatcattggctttgtatgttgtgcagtattttctatggcacc |
31499351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 211
Target Start/End: Complemental strand, 31148268 - 31148111
Alignment:
| Q |
45 |
gtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcctacc |
144 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||| |||| | ||||||| ||||||||||||||||||| |||||| ||| |||| |||||||| |
|
|
| T |
31148268 |
gtcattttcaactgtcctaaattgggtgagagggaatgttggaatagcatgatattttcatggatgatacaactcattcgggcgaacccacaatcct--- |
31148172 |
T |
|
| Q |
145 |
caacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatca |
211 |
Q |
| |
|
|| | |||| || ||||||||| ||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
31148171 |
ca------tctgatgtgattcaaattgttactccgggaagtgaaataccaagttggttcaacaatca |
31148111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 320
Target Start/End: Original strand, 31504224 - 31504490
Alignment:
| Q |
48 |
attttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctacaatcct-accca |
146 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||| | | || || |||||||||||||||||||||||||||||| ||||||||| |||||||| | || |
|
|
| T |
31504224 |
attttcaactgtcctaaattggatgagagggaatgctacattagaatgacattttcatggatgatacaattcattaaggcaaacccacaatcctcatccg |
31504323 |
T |
|
| Q |
147 |
acctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctc |
246 |
Q |
| |
|
| ||||||| || || || ||| || ||||| |||| |||||||||||||||| |||||||| | || |||| || ||||||||||| || |
|
|
| T |
31504324 |
a-ctactttcatgtgattc-aatcgttactcctggaaatgaaataccaagttggttcaacaattagagcaagggtcgctccatacaaataga-----ctg |
31504416 |
T |
|
| Q |
247 |
ctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgt |
320 |
Q |
| |
|
| ||||||||||| ||| |||||||||||||| | ||||||||||| ||||||| |||||| ||| |||||| |
|
|
| T |
31504417 |
gtcttatgcatgactttaaaaataatatcattggttgtgtatgttgtgtagtattttccatggaacctcgtcgt |
31504490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 38 - 129
Target Start/End: Complemental strand, 31157213 - 31157122
Alignment:
| Q |
38 |
aggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaa |
129 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||| ||||| |||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
31157213 |
aggattggtcattttcaactgtcctaaattgggtgagagtgaagattgcaatagcatggcattttcatggatgatacaattgattcaggcaa |
31157122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 166 - 301
Target Start/End: Complemental strand, 31157082 - 31156947
Alignment:
| Q |
166 |
aaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaatagacgaatctcctattatgcatgacaataa |
265 |
Q |
| |
|
||||||| | ||| |||||||||||||||| |||| |||||||||| || | ||||||||||||| ||| ||| ||||| |||||| | ||||| | |
|
|
| T |
31157082 |
aaattgttattcctggaagtgaaataccaatttggttcaacaatcagagcgagggtgattcaataagaatggacctatctcagattatggacaacaatga |
31156983 |
T |
|
| Q |
266 |
caataatatcattggatttgtatgttgtgcagtatt |
301 |
Q |
| |
|
|||| || ||||||| ||| |||||||||||||| |
|
|
| T |
31156982 |
caatgatttcattggcattgcttgttgtgcagtatt |
31156947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 31484918 - 31484966
Alignment:
| Q |
166 |
aaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaag |
214 |
Q |
| |
|
||||||| | |||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
31484918 |
aaattgttattccaggcagtgaaataccaagctggttcaacaatcaaag |
31484966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 37 - 358
Target Start/End: Original strand, 17440900 - 17441203
Alignment:
| Q |
37 |
caggattggtcattttcaactgttcaaaattgggtgagagggaacgttgcaggagcatgacattttcatggatgatacaattcattcaggcaaacctaca |
136 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
17440900 |
caggattgttcatcttcaactgtccaaaattgggtgagagggaatgttacagtagcatgacattttcatggatgatgcaattcattaaggcaa------- |
17440992 |
T |
|
| Q |
137 |
atcctacccaacctactttgataggactcaaattgtaactccaggaagtgaaataccaagttggatcaacaatcaaagtgtgggtgattcaatacaaata |
236 |
Q |
| |
|
|||| ||| || |||||| ||| ||||| | ||||||||| |||||||||||||||||||||||| | || ||||||||||||||| |||| |
|
|
| T |
17440993 |
-----accctttctatttgaataggattcatattgttagtccaggaagcgaaataccaagttggatcaacaataagagcgtgggtgattcaataagaata |
17441087 |
T |
|
| Q |
237 |
gacgaatctcctattatgcatgacaataacaataatatcattggatttgtatgttgtgcagtatttaccatggcaccacgtcgtaggcgggttccatcgt |
336 |
Q |
| |
|
||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||| | |||| || || ||||||||| |
|
|
| T |
17441088 |
gaccaatctcctattaagcatg------acaataatatcattggttttgtatgttgtgcagtattttccatggcacctcatcgtgggaggtttccatcgt |
17441181 |
T |
|
| Q |
337 |
caaccattatggaactagtttt |
358 |
Q |
| |
|
| || ||||||||| ||||| |
|
|
| T |
17441182 |
cggcccatatggaactggtttt |
17441203 |
T |
|
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