View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6637_low_11 (Length: 281)
Name: NF6637_low_11
Description: NF6637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6637_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 120 - 262
Target Start/End: Complemental strand, 10852767 - 10852625
Alignment:
| Q |
120 |
gtcaaatcctctttattgaatatccagaaccacaaaaatcaaagttcacatcctctctctcttcccaaatccaatacacgtgcatctcttcttctttccg |
219 |
Q |
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| T |
10852767 |
gtcaaatcctctttattgaatatccagaaccacaaaaatcaaagttcacatcctctctctcttcccaaatccaatacacgtgcatctcttcttctttccc |
10852668 |
T |
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| Q |
220 |
aggttaagcgccgcctctccttctccctctcctaattaccagc |
262 |
Q |
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| T |
10852667 |
aggttaagcgccgcctctccttctccctctcctaattaccagc |
10852625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 10852883 - 10852830
Alignment:
| Q |
4 |
atcaacaacaaacaaaattcatctttcacaacaacccaaagaaaattcatatgg |
57 |
Q |
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| T |
10852883 |
atcaacaacaaacaaaattcatctttcacaacaacccaaacaaaattcatatgg |
10852830 |
T |
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