View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6637_low_12 (Length: 274)

Name: NF6637_low_12
Description: NF6637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6637_low_12
NF6637_low_12
[»] chr2 (10 HSPs)
chr2 (43-271)||(10852971-10853200)
chr2 (138-274)||(10851913-10852049)
chr2 (126-274)||(45413385-45413535)
chr2 (160-274)||(28851616-28851730)
chr2 (138-271)||(28847336-28847469)
chr2 (126-274)||(45412335-45412484)
chr2 (147-274)||(27552452-27552580)
chr2 (138-274)||(27553728-27553865)
chr2 (138-274)||(1389233-1389369)
chr2 (218-274)||(12812836-12812892)
[»] chr7 (7 HSPs)
chr7 (85-274)||(35080283-35080473)
chr7 (138-274)||(35081522-35081659)
chr7 (90-208)||(39428489-39428607)
chr7 (147-274)||(9805356-9805484)
chr7 (126-274)||(12961984-12962133)
chr7 (225-274)||(23621990-23622039)
chr7 (222-264)||(36903529-36903571)
[»] chr4 (16 HSPs)
chr4 (85-274)||(8747691-8747881)
chr4 (138-274)||(8748968-8749104)
chr4 (138-274)||(40168639-40168776)
chr4 (126-273)||(40169688-40169836)
chr4 (172-274)||(33997851-33997954)
chr4 (138-274)||(48157600-48157736)
chr4 (138-274)||(9178635-9178771)
chr4 (218-274)||(8896955-8897011)
chr4 (148-195)||(48157200-48157247)
chr4 (138-196)||(9180591-9180649)
chr4 (216-274)||(55986309-55986367)
chr4 (216-259)||(14835583-14835626)
chr4 (218-264)||(25909497-25909543)
chr4 (218-264)||(49185581-49185626)
chr4 (126-192)||(55984849-55984915)
chr4 (220-265)||(2836908-2836953)
[»] chr1 (12 HSPs)
chr1 (89-274)||(3000085-3000271)
chr1 (138-274)||(46312065-46312203)
chr1 (147-274)||(2999491-2999618)
chr1 (126-274)||(46313183-46313332)
chr1 (90-274)||(14204837-14205023)
chr1 (147-272)||(46524542-46524668)
chr1 (147-274)||(46525772-46525900)
chr1 (227-274)||(14512669-14512716)
chr1 (138-192)||(50379893-50379947)
chr1 (218-264)||(3377511-3377557)
chr1 (218-266)||(50226400-50226448)
chr1 (218-274)||(50379974-50380030)
[»] chr6 (12 HSPs)
chr6 (89-274)||(12181595-12181781)
chr6 (126-274)||(20409067-20409216)
chr6 (138-274)||(20410138-20410275)
chr6 (90-190)||(12182668-12182768)
chr6 (218-271)||(22417661-22417714)
chr6 (126-274)||(6977027-6977176)
chr6 (126-274)||(16859336-16859485)
chr6 (126-274)||(16864401-16864550)
chr6 (147-274)||(22418867-22418995)
chr6 (216-274)||(6978137-6978195)
chr6 (126-192)||(6978045-6978111)
chr6 (138-205)||(27447875-27447943)
[»] chr3 (16 HSPs)
chr3 (85-274)||(32830958-32831148)
chr3 (138-274)||(32829740-32829877)
chr3 (147-274)||(51220533-51220660)
chr3 (147-274)||(26722533-26722661)
chr3 (138-271)||(48053129-48053262)
chr3 (147-274)||(10584012-10584140)
chr3 (216-274)||(26723904-26723962)
chr3 (126-274)||(54539407-54539556)
chr3 (218-274)||(51219462-51219518)
chr3 (216-274)||(21326320-21326378)
chr3 (216-274)||(54539109-54539167)
chr3 (222-274)||(53157182-53157233)
chr3 (218-264)||(33329880-33329926)
chr3 (218-264)||(44586044-44586090)
chr3 (126-196)||(48059078-48059148)
chr3 (218-264)||(51315742-51315788)
[»] chr5 (16 HSPs)
chr5 (150-274)||(124463-124587)
chr5 (147-274)||(5504066-5504194)
chr5 (138-274)||(17414544-17414681)
chr5 (138-274)||(17415611-17415747)
chr5 (147-274)||(121349-121477)
chr5 (147-274)||(5502918-5503045)
chr5 (126-274)||(24242017-24242167)
chr5 (147-274)||(3598851-3598980)
chr5 (138-274)||(14190409-14190545)
chr5 (216-274)||(3597323-3597381)
chr5 (138-196)||(14189743-14189801)
chr5 (139-196)||(25369281-25369338)
chr5 (218-274)||(8061856-8061912)
chr5 (218-264)||(12406051-12406097)
chr5 (218-255)||(3333959-3333996)
chr5 (218-274)||(8067452-8067508)
[»] chr8 (8 HSPs)
chr8 (129-274)||(38613329-38613475)
chr8 (147-274)||(38612219-38612347)
chr8 (148-274)||(13883801-13883926)
chr8 (150-274)||(13882655-13882780)
chr8 (142-205)||(18655885-18655948)
chr8 (126-274)||(23039436-23039585)
chr8 (126-194)||(23039205-23039273)
chr8 (218-255)||(28349565-28349602)
[»] scaffold0047 (1 HSPs)
scaffold0047 (216-259)||(32417-32460)
[»] scaffold0005 (1 HSPs)
scaffold0005 (216-259)||(4073-4116)
[»] scaffold0515 (1 HSPs)
scaffold0515 (218-264)||(3649-3695)
[»] scaffold0306 (1 HSPs)
scaffold0306 (218-264)||(3649-3695)
[»] scaffold0003 (1 HSPs)
scaffold0003 (138-205)||(39415-39483)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 43 - 271
Target Start/End: Original strand, 10852971 - 10853200
Alignment:
Q  43 aattcttctatttacacgcgtgacattttgacttnnnnnnnntggtgaaatacacaagtggcgtgccagtaccattaatgaagtgacacctcagagttga 142  Q
    |||||||||||||||||||||| |||||||||||        |||||||||||||| |||||||||||| ||||||||| ||||||||| |||| |||||    
T  10852971 aattcttctatttacacgcgtggcattttgacttaaaaaaaatggtgaaatacacatgtggcgtgccagcaccattaataaagtgacacatcagtgttga 10853070  T
Q  143 cccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaacattg 241  Q
     |  ||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||        |||| |||| ||||||||||||||||    
T  10853071 tctggtcaaaattggccaaaaggtcacttttgcaaaggggctaaaccattgggggcaaaattttcattttttttaataaggggtcaaaatcgcaacattg 10853170  T
Q  242 gtaaagttagggggtcaaaactgtagttta 271  Q
     |||||||| ||||||||||||||||||||    
T  10853171 ataaagttaaggggtcaaaactgtagttta 10853200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 10852049 - 10851913
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaac 237  Q
    |||||||  ||||||||||  |||||  |||||||||||||||||||||||||||||||| ||||||||||       |||||||||  |||||||||||    
T  10852049 gttgacctggtcaaaattgaccaaaagttcacttttgcaaaggggctaaaacatagggggtaaaattttcatttttttaatagggggttaaaatcgcaac 10851950  T
Q  238 attggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||| ||||||||||||||||||||||||||||||||    
T  10851949 attgataaagttagggggtcaaaactgtagtttagcc 10851913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 45413385 - 45413535
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn--aatagggg 223  Q
    ||||||||| | |||||||| |||||||||| |||||  ||| |||||||||| |||||||||||||||||   |||||||||         ||||||||    
T  45413385 tgacacctccgcgttgacccggtcaaaattgatcaaatggtctcttttgcaaatgggctaaaacataggggtttaaattttcatttttttttaatagggg 45413484  T
Q  224 gccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||||||||| |||||  ||||||||||||||||||||| |||||||||    
T  45413485 gccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 45413535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 160 - 274
Target Start/End: Original strand, 28851616 - 28851730
Alignment:
Q  160 aaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaacattggtaaagttagggggtcaa 259  Q
    |||| ||||||||||||||||  ||||||||||||||   |||||||||       ||||||||| ||||||||||||||||  ||||||||||||||||    
T  28851616 aaaaggtcacttttgcaaaggaactaaaacataggggttcaaattttcattttttaaatagggggtcaaaatcgcaacattgtgaaagttagggggtcaa 28851715  T
Q  260 aactgtagtttagcc 274  Q
    ||||| |||||||||    
T  28851716 aactgcagtttagcc 28851730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 271
Target Start/End: Complemental strand, 28847469 - 28847336
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaac 237  Q
    ||||||||  |||||||||  ||||| |||||||||||||||||||||||||||||||    |||||||||       |||||||| ||||||| |||||    
T  28847469 gttgacccgatcaaaattgaccaaaaggtcacttttgcaaaggggctaaaacatagggattcaaattttcatttttttaataggggaccaaaattgcaac 28847370  T
Q  238 attggtaaagttagggggtcaaaactgtagttta 271  Q
    ||||  ||| ||||||||||||||||| ||||||    
T  28847369 attgtgaaaattagggggtcaaaactgcagttta 28847336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 45412484 - 45412335
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn-aataggggg 224  Q
    ||||||||| | |||||||| |||||||||| |||||  |||  |||||||||||||||||| ||||||||   |||||||||        |||||||||    
T  45412484 tgacacctccgcgttgacccggtcaaaattgatcaaatggtctattttgcaaaggggctaaatcataggggtttaaattttcattttttttaataggggg 45412385  T
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
     |||||||||| |||||  ||||||||||||||||||||| |||||||||    
T  45412384 tcaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 45412335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 274
Target Start/End: Complemental strand, 27552580 - 27552452
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaat-agggggccaaaatcgcaacattggtaa 245  Q
    ||||||||||  ||||| |||| | ||||||||||| |||| | |||||||| |||||||||        || |||| ||||||||||||||||||| ||    
T  27552580 gtcaaaattgaccaaaaggtcaatattgcaaaggggttaaatcttagggggctaaattttcattttttttattagggagccaaaatcgcaacattggcaa 27552481  T
Q  246 agttagggggtcaaaactgtagtttagcc 274  Q
    | |||||||||||||||||||||||||||    
T  27552480 atttagggggtcaaaactgtagtttagcc 27552452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 27553728 - 27553865
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaat-agggggccaaaatcgcaa 236  Q
    |||||| | ||||||||||  ||||| |||  | |||||||||||||||| | ||||||||||||||||||        || ||| ||||||||||||||    
T  27553728 gttgactcggtcaaaattgaccaaaaggtcgatattgcaaaggggctaaatcttagggggcaaaattttcattttttttattaggaggccaaaatcgcaa 27553827  T
Q  237 cattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||| | ||| ||||||||| |||||||||||||||||    
T  27553828 cattagcaaacttagggggttaaaactgtagtttagcc 27553865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 1389369 - 1389233
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaac 237  Q
    |||||||  ||||||||||  ||||| |||  ||||||||||||||||||||||| |||   ||| ||| |       |||||||||||||||||||| |    
T  1389369 gttgacctggtcaaaattgaccaaaaggtctgttttgcaaaggggctaaaacataagggtttaaaatttaatttttttaatagggggccaaaatcgcacc 1389270  T
Q  238 attggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||   ||||||||||||| ||||||| |||||||||    
T  1389269 attctgaaagttagggggttaaaactgcagtttagcc 1389233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 12812892 - 12812836
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||||||| ||||||| | ||| ||| | |||||||||||||| ||||||    
T  12812892 tagggggccaaaatctcaacattagcaaacttaagaggtcaaaactgtagcttagcc 12812836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 35080473 - 35080283
Alignment:
Q  85 tggtgaaatacacaagtggcgtgccagtaccattaatgaagtgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggct 184  Q
    |||| ||||||||| ||||| |||||| || |||||||||||| |||||| | |||||||| |||||||||| |||||| ||||||||||||||||||||    
T  35080473 tggttaaatacacatgtggcatgccagcactattaatgaagtgccacctccgcgttgacccggtcaaaattgatcaaaaggtcacttttgcaaaggggct 35080374  T
Q  185 aaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||||||||||| ||||        | |||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  35080373 aaaacatagggggcaaaatattcattttttttattaggggaccaaaatcgcaacattggcaaacttagggggtcaaaactgtagtttagcc 35080283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 35081522 - 35081659
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaa 236  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||        | ||||| |||||||||||||    
T  35081522 gttgacccagtcaaaattgaccaaaaggtcacttttgcaaaggggctaaaacatagggggcaaaatattcattttttttattagggcgccaaaatcgcaa 35081621  T
Q  237 cattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||  ||| |||||||||||||||||||||||||||    
T  35081622 cattgacaaacttagggggtcaaaactgtagtttagcc 35081659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 39428489 - 39428607
Alignment:
Q  90 aaatacacaagtggcgtgccagtaccattaatgaagtgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaac 189  Q
    ||||||||| |||||||||||| || |||||||||||| |||||| | ||||| || |||||||||| | ||||||||||||||||||||||| |||||     
T  39428489 aaatacacatgtggcgtgccagcactattaatgaagtgccacctccgcgttgatccggtcaaaattgattaaaatgtcacttttgcaaaggggttaaaat 39428588  T
Q  190 atagggggcaaaattttca 208  Q
    ||||| |||||||| ||||    
T  39428589 ataggaggcaaaatattca 39428607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 9805356 - 9805484
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaat-agggggccaaaatcgcaacattggtaa 245  Q
    |||||||||  |||||| |||| | |||||||||||||||| |  ||||||| |||||||||        || || ||||||||||||||||||||| ||    
T  9805356 gtcaaaattaatcaaaaagtcaatattgcaaaggggctaaatctcagggggccaaattttcattttttctattagagggccaaaatcgcaacattggcaa 9805455  T
Q  246 agttagggggtcaaaactgtagtttagcc 274  Q
    | |||||||||||||||||||||||||||    
T  9805456 acttagggggtcaaaactgtagtttagcc 9805484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 12962133 - 12961984
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn-aataggggg 224  Q
    ||||||||| | |||||||  ||||||||||  ||||| |||  |||||||||||||||||||||||||||   ||| ||| |        |||||||||    
T  12962133 tgacacctccgcgttgacctggtcaaaattgaccaaaaagtctgttttgcaaaggggctaaaacataggggtttaaaatttaattttttttaataggggg 12962034  T
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||| |||||  ||||||||||||| ||||||| |||||||||    
T  12962033 ccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 12961984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 23621990 - 23622039
Alignment:
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||||||||||||||| ||| ||||| || ||||||||||||||||||    
T  23621990 ccaaaatcgcaacattggcaaacttaggaggccaaaactgtagtttagcc 23622039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 36903529 - 36903571
Alignment:
Q  222 gggccaaaatcgcaacattggtaaagttagggggtcaaaactg 264  Q
    ||||||||||||||||||||  ||||||||||||| |||||||    
T  36903529 gggccaaaatcgcaacattgaaaaagttagggggttaaaactg 36903571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 85 - 274
Target Start/End: Complemental strand, 8747881 - 8747691
Alignment:
Q  85 tggtgaaatacacaagtggcgtgccagtaccattaatgaagtgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggct 184  Q
    |||| ||||||||| ||||| |||||| || |||||||||||| |||||| | |||||||| |||||||||| |||||| ||||||||||||||||||||    
T  8747881 tggttaaatacacatgtggcatgccagcactattaatgaagtgccacctccgcgttgacccggtcaaaattgatcaaaaggtcacttttgcaaaggggct 8747782  T
Q  185 aaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||||||||||| ||||        | ||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||    
T  8747781 aaaacatagggggcaaaatattcattttttttattagggggccaaaatcgcaacattggcaaacttaaggggtcaaaactgtagtttagcc 8747691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 8748968 - 8749104
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaac 237  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||| || |       | ||||||||||||||||||||    
T  8748968 gttgacccagtcaaaattgaccaaaaagtcacttttgcaaaggggctaaaacatagggggcaaaatatttatttttttattagggggccaaaatcgcaac 8749067  T
Q  238 attggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||| ||| ||| |||||||||| ||||||||||||    
T  8749068 attggcaaacttaaggggtcaaaagtgtagtttagcc 8749104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 40168776 - 40168639
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn-aatagggggccaaaatcgcaa 236  Q
    |||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||||||   |||||||||        ||||||||||||||||||||     
T  40168776 gttgaccaggtcaaaattggccaaaaggtcacttttgcaaaggggctaaaacataggggtttaaattttcattttttttaatagggggccaaaatcgcac 40168677  T
Q  237 cattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||  ||||||||||||||||||||| |||||||||    
T  40168676 cattgtaaaagttagggggtcaaaactgcagtttagcc 40168639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 273
Target Start/End: Original strand, 40169688 - 40169836
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn-aataggggg 224  Q
    ||||||||| | |||||||| ||||||||||  ||||| ||| ||||||||||||||||||| ||||||||   |||||||||        |||||||||    
T  40169688 tgacacctccgcgttgacccggtcaaaattgaccaaaaggtctcttttgcaaaggggctaaaccataggggtttaaattttcattttttttaataggggg 40169787  T
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagc 273  Q
    ||||||||||| |||||  ||||||||||||||||||||| ||||||||    
T  40169788 ccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagc 40169836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 172 - 274
Target Start/End: Original strand, 33997851 - 33997954
Alignment:
Q  172 ttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaat-agggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagttt 270  Q
    |||||||||||||||| | ||||||||||||||||||        || |||||| ||||||||||||||| | ||| |||||||||||||||||||||||    
T  33997851 ttgcaaaggggctaaatcttagggggcaaaattttcattttttttattagggggtcaaaatcgcaacattagcaaacttagggggtcaaaactgtagttt 33997950  T
Q  271 agcc 274  Q
    ||||    
T  33997951 agcc 33997954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 48157600 - 48157736
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaac 237  Q
    |||||||| ||||||||||  ||||| |||  |||||||||||||||||||||||||||   ||||| | |       | |||||||||||||||||| |    
T  48157600 gttgacccggtcaaaattgaccaaaaggtcttttttgcaaaggggctaaaacataggggtttaaattgtaatttttttattagggggccaaaatcgcacc 48157699  T
Q  238 attggtaaagttagggggtcaaaactgtagtttagcc 274  Q
     ||   ||||||||||||||||||||| |||||||||    
T  48157700 tttatgaaagttagggggtcaaaactgcagtttagcc 48157736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 9178771 - 9178635
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaac 237  Q
    |||||||| ||||||||||  ||||| ||| ||||||||||||||||||||||||||||   ||||| | |       |  ||||||||||||||||| |    
T  9178771 gttgacccggtcaaaattgaccaaaaggtctcttttgcaaaggggctaaaacataggggtttaaattgtaatttttttataagggggccaaaatcgcacc 9178672  T
Q  238 attggtaaagttagggggtcaaaactgtagtttagcc 274  Q
     ||   ||||||||| ||||||||||| |||||||||    
T  9178671 tttatgaaagttaggaggtcaaaactgcagtttagcc 9178635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 8896955 - 8897011
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||| ||||||||| |||||||| ||| |||||| ||||||||||||||||||||    
T  8896955 taggggaccaaaatcgtaacattggcaaacttagggagtcaaaactgtagtttagcc 8897011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 48157247 - 48157200
Alignment:
Q  148 tcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacataggg 195  Q
    ||||||||| |||||| ||| |||||||||||||||||||||||||||    
T  48157247 tcaaaattgatcaaaaggtctcttttgcaaaggggctaaaacataggg 48157200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 196
Target Start/End: Original strand, 9180591 - 9180649
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggg 196  Q
    ||||||||  |||||||||  ||||| ||| ||||||||||||||||||||||||||||    
T  9180591 gttgacccgatcaaaattgaccaaaaggtctcttttgcaaaggggctaaaacatagggg 9180649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 55986309 - 55986367
Alignment:
Q  216 aatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||| |||||||||| |||||  ||||||||||||| ||||||| |||||||||    
T  55986309 aatagggggtcaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 55986367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 14835583 - 14835626
Alignment:
Q  216 aatagggggccaaaatcgcaacattggtaaagttagggggtcaa 259  Q
    |||||||||||||||||||||| ||  |||||||||||||||||    
T  14835583 aatagggggccaaaatcgcaacttttataaagttagggggtcaa 14835626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 25909543 - 25909497
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactg 264  Q
    ||||||||||||||| |||| |||| ||||||||||||| |||||||    
T  25909543 tagggggccaaaatcacaactttggaaaagttagggggttaaaactg 25909497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 49185626 - 49185581
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactg 264  Q
    |||||||||||||||||||| |||| ||||||||||||| |||||||    
T  49185626 tagggggccaaaatcgcaac-ttgggaaagttagggggttaaaactg 49185581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 55984915 - 55984849
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacata 192  Q
    ||||||||| | |||||||  ||||||||||  ||||| |||  |||||||||||||||||||||||    
T  55984915 tgacacctccgcgttgacctggtcaaaattgaccaaaaggtctgttttgcaaaggggctaaaacata 55984849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 2836953 - 2836908
Alignment:
Q  220 gggggccaaaatcgcaacattggtaaagttagggggtcaaaactgt 265  Q
    |||||||||||||||| | |||| ||||||||||||| ||||||||    
T  2836953 gggggccaaaatcgcagctttggaaaagttagggggttaaaactgt 2836908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 89 - 274
Target Start/End: Original strand, 3000085 - 3000271
Alignment:
Q  89 gaaatacacaagtggcgtgccagtaccattaatgaagtgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaa 188  Q
    |||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  3000085 gaaatatacatgtggcgtgccagcaccattaatgaagtgacacctcagcgttgacccgatcaaaatttgtcaaaatgtcacttttgcaaaggggctaaaa 3000184  T
Q  189 catagggggcaaaattttcannnnnnnaat-agggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    | |||||||||||||||| |        || || ||  |||||||||||||||   ||| ||| |||||||||||||||||||||||    
T  3000185 cttagggggcaaaatttttattttttttattagaggatcaaaatcgcaacattaacaaaattaaggggtcaaaactgtagtttagcc 3000271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 46312203 - 46312065
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn--aatagggggccaaaatcgca 235  Q
    |||||||  ||||||||||| ||||| ||||||||||||||||| ||||||  ||||||||||||||||||         | ||||||||||||||||||    
T  46312203 gttgaccaggtcaaaattggccaaaaggtcacttttgcaaagggactaaaatttagggggcaaaattttcatttttttttattagggggccaaaatcgca 46312104  T
Q  236 acattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46312103 acattggtaaagttagggggtcaaaactgtagtttagcc 46312065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 274
Target Start/End: Complemental strand, 2999618 - 2999491
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaacattggtaaa 246  Q
    ||||||||||| ||||| | ||||||||||||||||||||||  |||||| |||||||||||       | ||||||  ||||||||||||||||  |||    
T  2999618 gtcaaaattggccaaaagggcacttttgcaaaggggctaaaatttaggggtcaaaattttcatttttttattaggggatcaaaatcgcaacattgacaaa 2999519  T
Q  247 gttagggggtcaaaactgtagtttagcc 274  Q
    ||||| ||||||||||||||||||||||    
T  2999518 gttagagggtcaaaactgtagtttagcc 2999491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 46313183 - 46313332
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn-aataggggg 224  Q
    ||||||||| | ||||| || ||||||||||  ||||| ||| |||||||||||||||||||||||| |||   |||||||||        |||||||||    
T  46313183 tgacacctccgcgttgatccggtcaaaattgaccaaaaggtctcttttgcaaaggggctaaaacataagggtttaaattttcattttttttaataggggg 46313282  T
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||| | |||  ||||||||||||||||||||| |||||||||    
T  46313283 ccaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagcc 46313332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 274
Target Start/End: Complemental strand, 14205023 - 14204837
Alignment:
Q  90 aaatacacaagtggcgtgccagtaccattaatgaagtgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaac 189  Q
    ||||||||| ||||||||||||  | ||||||||||||  | || || ||| |||| ||||||||||||||||| || ||| |||||||||||||||| |    
T  14205023 aaatacacaggtggcgtgccagatcaattaatgaagtgctaactaagtgttaacccggtcaaaattggtcaaaaggtaactattgcaaaggggctaaatc 14204924  T
Q  190 atag-ggggcaaaattttc-annnnnnnaatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
     ||| |||| ||||||||| |       | ||| |||||||||||||| |||||  |||  || |||| ||||||||||||||||||    
T  14204923 ttagaggggtaaaattttcaatatttttattagagggccaaaatcgcagcattgtcaaacataaggggccaaaactgtagtttagcc 14204837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 272
Target Start/End: Complemental strand, 46524668 - 46524542
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaat-agggggccaaaatcgcaacattggtaa 245  Q
    ||||||||||| |||||  ||||  |||||||||||||||| | |||||||| ||||||| |        || ||||| ||||||| |||||||||||||    
T  46524668 gtcaaaattggccaaaagatcacaattgcaaaggggctaaatcttagggggccaaatttttattttttttatcaggggaccaaaattgcaacattggtaa 46524569  T
Q  246 agttagggggtcaaaactgtagtttag 272  Q
    | |||||||| ||||||||||||||||    
T  46524568 acttagggggccaaaactgtagtttag 46524542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 46525772 - 46525900
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaat-agggggccaaaatcgcaacattggtaa 245  Q
    ||||||||||  |||||  ||||  |||||||||||||||| | |||||||| |||||||||        || ||| |||||||||||||||||||| ||    
T  46525772 gtcaaaattgaccaaaagatcacaattgcaaaggggctaaatcttagggggccaaattttcattttttttattaggaggccaaaatcgcaacattggcaa 46525871  T
Q  246 agttagggggtcaaaactgtagtttagcc 274  Q
    | |||||||| ||||||||||| ||||||    
T  46525872 acttagggggccaaaactgtagattagcc 46525900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 14512669 - 14512716
Alignment:
Q  227 aaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  14512669 aaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 14512716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 50379893 - 50379947
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacata 192  Q
    |||||||| ||||||||||  ||||| ||| ||||||||||||||||||||||||    
T  50379893 gttgacccggtcaaaattgaccaaaaggtctcttttgcaaaggggctaaaacata 50379947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 3377557 - 3377511
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactg 264  Q
    |||||||||||||||||||| |||| ||||||||||||  |||||||    
T  3377557 tagggggccaaaatcgcaactttggaaaagttagggggctaaaactg 3377511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 50226448 - 50226400
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgta 266  Q
    |||||||||||||||||||| |||  ||||||||||||  |||||||||    
T  50226448 tagggggccaaaatcgcaactttgaaaaagttagggggctaaaactgta 50226400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 50379974 - 50380030
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||| ||||||||||| | ||   ||||||||||||||||||||| |||||||||    
T  50379974 taggggaccaaaatcgcacctttatgaaagttagggggtcaaaactgcagtttagcc 50380030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 274
Target Start/End: Complemental strand, 12181781 - 12181595
Alignment:
Q  89 gaaatacacaagtggcgtgccagtaccattaatgaagtgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaa 188  Q
    |||||||||| || ||||||| | ||||||||||||||| |||||| | |||||||| ||||||||||  ||||  ||||||||||||||||||||||||    
T  12181781 gaaatacacatgtagcgtgcccgcaccattaatgaagtgccacctccgtgttgacccggtcaaaattgaccaaatggtcacttttgcaaaggggctaaaa 12181682  T
Q  189 catagggg-gcaaaattttcannnnnnnaatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||||| | ||||||||||       || |||||||||||||| |||||||   ||||||||| ||||||||||| |||||||||    
T  12181681 cataggggaggaaaattttcatttttttaaaagggggccaaaatcccaacatttacaaagttaggaggtcaaaactgcagtttagcc 12181595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 20409216 - 20409067
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn-aataggggg 224  Q
    ||||||||| | |||||||| ||||||||||  || || ||| ||||||||||||||||||||||||||||   |||||||||        |||||||||    
T  20409216 tgacacctccgcgttgacccggtcaaaattgaccataaggtctcttttgcaaaggggctaaaacataggggtttaaattttcattttttttaataggggg 20409117  T
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||| |||||  ||||||||||||||||||||| |||||||||    
T  20409116 ccaaaatcgcaccattgtgaaagttagggggtcaaaactgcagtttagcc 20409067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 20410138 - 20410275
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaa 236  Q
    |||||||  ||||||||||| ||||| |||||||||||||||||||||||||||| |||   |||||||||        ||||||||| ||||||||||     
T  20410138 gttgaccaggtcaaaattggccaaaaggtcacttttgcaaaggggctaaaacataagggtttaaattttcattttttttaatagggggtcaaaatcgcac 20410237  T
Q  237 cattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||  ||||||||||||||||||||| |||||||||    
T  20410238 cattgtaaaagttagggggtcaaaactgcagtttagcc 20410275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 12182668 - 12182768
Alignment:
Q  90 aaatacacaagtggcgtgccagtaccattaatgaagtgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaac 189  Q
    ||||||||| |||||||||||  ||||||||||||||| |||||| | ||||| |  ||||||||||  ||||||||||||||| |||||||||||||||    
T  12182668 aaatacacatgtggcgtgccaacaccattaatgaagtgccacctccgtgttgatctggtcaaaattgaccaaaatgtcactttttcaaaggggctaaaac 12182767  T
Q  190 a 190  Q
    |    
T  12182768 a 12182768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 22417714 - 22417661
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagttta 271  Q
    |||||||||||||||| |||||| | ||| ||||||||||||||||||||||||    
T  22417714 tagggggccaaaatcgtaacattagcaaacttagggggtcaaaactgtagttta 22417661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 6977176 - 6977027
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn-aataggggg 224  Q
    ||||||||| | |||||||  ||||||||||  ||||| |||  ||||||||||||||||||||||| |||   ||| ||| |        |||||||||    
T  6977176 tgacacctccgcgttgacctggtcaaaattgaccaaaaggtctgttttgcaaaggggctaaaacataagggtttaaaatttaattttttttaataggggg 6977077  T
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||| ||| |||||  ||||||||||||| ||||||| |||||||||    
T  6977076 ccaaaattgcaccattgtgaaagttagggggttaaaactgcagtttagcc 6977027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 16859485 - 16859336
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggg-gcaaaattttcannnnnnnaataggggg 224  Q
    ||||||||| | |||||||  ||||||||||  ||||| |||  |||||||||||||||||||||||||||   |||||||          |||||||||    
T  16859485 tgacacctccgcgttgacctggtcaaaattgaccaaaaggtctgttttgcaaaggggctaaaacataggggtttaaaatttaattttttttaataggggg 16859386  T
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
     |||||||||| |||||  ||||||||||||| |||| || |||||||||    
T  16859385 tcaaaatcgcaccattgtgaaagttagggggttaaaattgcagtttagcc 16859336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 16864401 - 16864550
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggg-gcaaaattttcannnnnnnaataggggg 224  Q
    ||||||||| | |||||||  ||||||||||  ||||| |||  |||||||||||||||||||||||||||   || ||||          ||||||||     
T  16864401 tgacacctccgcgttgacctggtcaaaattgaccaaaaggtctgttttgcaaaggggctaaaacataggggtttaatatttaattttttttaatagggga 16864500  T
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||| |||||  ||||||||||||| ||||||| |||||||||    
T  16864501 ccaaaatcgcaccattgtaaaagttagggggttaaaactgcagtttagcc 16864550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 22418867 - 22418995
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaacattggtaa 245  Q
    ||||||||||  ||||| |||||  |||||||||||||||| | ||||||||||||||||||        | |||||| | ||||||| |||||||  ||    
T  22418867 gtcaaaattgaccaaaaggtcacaattgcaaaggggctaaatcttagggggcaaaattttcattttttttattaggggacaaaaatcgtaacattgacaa 22418966  T
Q  246 agttagggggtcaaaactgtagtttagcc 274  Q
    | |||||||| |||||| |||||||||||    
T  22418967 acttagggggccaaaaccgtagtttagcc 22418995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 6978137 - 6978195
Alignment:
Q  216 aatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||| |||||||||||| |||||  ||||||||||||| ||||||| |||||||||    
T  6978137 aatagggagccaaaatcgcaccattgtgaaagttagggggttaaaactgcagtttagcc 6978195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 6978045 - 6978111
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacata 192  Q
    ||||||||| | |||||||  ||||||||||  ||||| |||  |||||||||||||||||||||||    
T  6978045 tgacacctccgcgttgacctggtcaaaattgaccaaaaggtctgttttgcaaaggggctaaaacata 6978111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 27447875 - 27447943
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtc-acttttgcaaaggggctaaaacatagggggcaaaattt 205  Q
    ||||||| |||||||||||| ||||| | | ||| ||||||||||||||||||||| ||| | ||||||    
T  27447875 gttgaccaagtcaaaattggacaaaaagaccactattgcaaaggggctaaaacataagggactaaattt 27447943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 274
Target Start/End: Original strand, 32830958 - 32831148
Alignment:
Q  85 tggtgaaatacacaagtggcgtgccagtaccattaatgaagtgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggct 184  Q
    |||| ||||||||| | |||||||||| || |||||||||||| |||||| | |||||||| ||||||||||  ||||| ||||||||||||||||||||    
T  32830958 tggttaaatacacatgcggcgtgccagcactattaatgaagtgccacctccgcgttgacccggtcaaaattgaccaaaaagtcacttttgcaaaggggct 32831057  T
Q  185 aaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||||||||||  ||||        | ||| ||| ||||||||||||||||  |||  ||||||||||||||||||||||||||    
T  32831058 aaaacatagggggcaaaaaattcattttttttattagagggtcaaaatcgcaacattgacaaacatagggggtcaaaactgtagtttagcc 32831148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 32829877 - 32829740
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaa 236  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||        | |||||||||||||||||||    
T  32829877 gttgacccggtcaaaattgatcaaaaggtcacttttgcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggccaaaatcgcaa 32829778  T
Q  237 cattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
     ||||| ||| |||||||||||||||||||||||||||    
T  32829777 aattggcaaacttagggggtcaaaactgtagtttagcc 32829740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 51220533 - 51220660
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaacattggtaaa 246  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||       | |||||||| |||||||||||||||  |||    
T  51220533 gtcaaaattgaccaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaatattcatttttttattagggggctaaaatcgcaacattgacaaa 51220632  T
Q  247 gttagggggtcaaaactgtagtttagcc 274  Q
     ||| |||||||||||||||||||||||    
T  51220633 cttaaggggtcaaaactgtagtttagcc 51220660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 147 - 274
Target Start/End: Complemental strand, 26722661 - 26722533
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggc-aaaattttcannnnnnnaatagggggccaaaatcgcaacattggtaa 245  Q
    |||||||||||  |||| |||||| |||||||||||||||| |||||||| | |||||| |||       ||||||||||||||||||||||||||||||    
T  26722661 gtcaaaattggctaaaaggtcactattgcaaaggggctaaatcataggggaccaaaattgtcatttttttaatagggggccaaaatcgcaacattggtaa 26722562  T
Q  246 agttagggggtcaaaactgtagtttagcc 274  Q
    | |||||||| ||||||||||||||||||    
T  26722561 acttagggggccaaaactgtagtttagcc 26722533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 271
Target Start/End: Complemental strand, 48053262 - 48053129
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaac 237  Q
    |||||||| ||||||||||  ||||| ||| |||||||||| |||||||||||||||||   |||||||||       |||||||||||||||||||| |    
T  48053262 gttgacccggtcaaaattgaccaaaaggtctcttttgcaaatgggctaaaacataggggtttaaattttcatttttttaatagggggccaaaatcgcacc 48053163  T
Q  238 attggtaaagttagggggtcaaaactgtagttta 271  Q
    ||||  |||||||| |||| ||||||| ||||||    
T  48053162 attgtgaaagttagagggttaaaactgcagttta 48053129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 10584012 - 10584140
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaat-agggggccaaaatcgcaacattggtaa 245  Q
    ||||||||||  ||||| |||| | |||||||||||||||| | |||||||| ||||||| |        || |||||||||||||||||||||||| ||    
T  10584012 gtcaaaattgaccaaaaggtcaatattgcaaaggggctaaatcttagggggccaaattttaattttttttattagggggccaaaatcgcaacattggcaa 10584111  T
Q  246 agttagggggtcaaaactgtagtttagcc 274  Q
    | ||||||| |||||||||||||||||||    
T  10584112 acttaggggatcaaaactgtagtttagcc 10584140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Original strand, 26723904 - 26723962
Alignment:
Q  216 aatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||    
T  26723904 aatagggggccaaaattgcaacattagtaaacttagggggccaaaactgtagtttagcc 26723962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 54539407 - 54539556
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggg-gcaaaattttcannnnnnnaataggggg 224  Q
    ||||||||| | |||||||  ||||||||||   ||||||||  |||||||||||||||||||||||||||   |||||||          |||||||||    
T  54539407 tgacacctccgcgttgacctggtcaaaattgacaaaaatgtctgttttgcaaaggggctaaaacataggggtttaaaatttaattttttttaataggggg 54539506  T
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||| |||||  ||||||| ||||| ||||||| |||||||||    
T  54539507 ccaaaatcgcaccattgtcaaagttaaggggttaaaactgcagtttagcc 54539556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 51219518 - 51219462
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||||||||||| |||||||||  ||| ||||| |||||||||||||||||||||    
T  51219518 tagggggccaaaattgcaacattgacaaacttaggaggtcaaaactgtagtttagcc 51219462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 21326378 - 21326320
Alignment:
Q  216 aatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||||| ||||||| |||| ||||||||| ||| |||||||||| ||||||||||||    
T  21326378 aataggggaccaaaattgcaatattggtaaacttaaggggtcaaaagtgtagtttagcc 21326320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 54539167 - 54539109
Alignment:
Q  216 aatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||||||||| || |||||  ||||||||||||| ||||||| |||||||||    
T  54539167 aatagggggccaaaatcacaccattgtgaaagttagggggttaaaactgcagtttagcc 54539109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 274
Target Start/End: Original strand, 53157182 - 53157233
Alignment:
Q  222 gggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||| |||||||||||||| ||| ||||||| |||||||||||||||||||    
T  53157182 gggccagaatcgcaacattggcaaacttagggg-tcaaaactgtagtttagcc 53157233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 33329880 - 33329926
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactg 264  Q
    |||||||||||||||||||| |||| |||||| |||||| |||||||    
T  33329880 tagggggccaaaatcgcaacgttgggaaagttggggggttaaaactg 33329926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 44586044 - 44586090
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactg 264  Q
    |||||||||||||||||||| |||| ||||||||||||  |||||||    
T  44586044 tagggggccaaaatcgcaactttgggaaagttagggggctaaaactg 44586090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 48059078 - 48059148
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggg 196  Q
    ||||||||| | ||||| || ||||||||||  |||||  |  ||||||||||||||||||||||||||||    
T  48059078 tgacacctccgcgttgatccggtcaaaattgaccaaaagatatcttttgcaaaggggctaaaacatagggg 48059148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 51315742 - 51315788
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactg 264  Q
    |||||||||||||||||||| |||| ||||||||||||  |||||||    
T  51315742 tagggggccaaaatcgcaactttgggaaagttagggggctaaaactg 51315788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 150 - 274
Target Start/End: Original strand, 124463 - 124587
Alignment:
Q  150 aaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaacattggtaaagtt 249  Q
    |||||||  |||||||||||||||||||||||||||||| |||||||||||||| ||||       | ||||||||||||||||||||||||| ||| ||    
T  124463 aaaattgaccaaaatgtcacttttgcaaaggggctaaaatatagggggcaaaatattcatttttttattagggggccaaaatcgcaacattggcaaactt 124562  T
Q  250 agggggtcaaaactgtagtttagcc 274  Q
    | | |||||||||||||||||||||    
T  124563 aagaggtcaaaactgtagtttagcc 124587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 5504066 - 5504194
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaacattggtaa 245  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||        | ||||||| ||||||||||||||||| ||    
T  5504066 gtcaaaattgaccaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggtcaaaatcgcaacattggcaa 5504165  T
Q  246 agttagggggtcaaaactgtagtttagcc 274  Q
    | ||| | |||||||||||||||||||||    
T  5504166 acttaagaggtcaaaactgtagtttagcc 5504194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 17414681 - 17414544
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaa 236  Q
    |||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||||||   |||||||||        ||||||||||||||||||||     
T  17414681 gttgaccaggtcaaaattggccaaaaggtcacttttgcaaaggggctaaaacataggggtttaaattttcattttttttaatagggggccaaaatcgcac 17414582  T
Q  237 cattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||  |||||||| |||||||||||| |||||||||    
T  17414581 cattgtaaaagttagagggtcaaaactgcagtttagcc 17414544  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 17415611 - 17415747
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaac 237  Q
    |||||||| ||||||||||  ||||| ||| ||||||||||||||||||||||||||||   |||||||||       || || |||||||||||||| |    
T  17415611 gttgacccggtcaaaattgaccaaaaggtctcttttgcaaaggggctaaaacataggggtttaaattttcatttttttaagagtgggccaaaatcgcacc 17415710  T
Q  238 attggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||  ||||||||||||||||||||| |||||||||    
T  17415711 attgtgaaagttagggggtcaaaactgcagtttagcc 17415747  T

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Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 274
Target Start/End: Complemental strand, 121477 - 121349
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaacattggtaa 245  Q
    ||||||||||  |||||||||||||||||||||||||||||| |||||||||||||| ||||        | ||||||| |||||| |||||||||| ||    
T  121477 gtcaaaattgaccaaaatgtcacttttgcaaaggggctaaaatatagggggcaaaatattcattttttttattagggggtcaaaattgcaacattggcaa 121378  T
Q  246 agttagggggtcaaaactgtagtttagcc 274  Q
    | |||| | ||||||||||||||||||||    
T  121377 atttagagtgtcaaaactgtagtttagcc 121349  T

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Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 274
Target Start/End: Complemental strand, 5503045 - 5502918
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaacattggtaa 245  Q
    ||||||||||  |||||||||||||||||||||||| |||||||||||||||||||| ||||        | |||||||||||||| |||||||||| ||    
T  5503045 gtcaaaattgaccaaaatgtcacttttgcaaaggggttaaaacatagggggcaaaatattcattttttttattagggggccaaaattgcaacattggcaa 5502946  T
Q  246 agttagggggtcaaaactgtagtttagcc 274  Q
    | |||  ||||||||||||||||||||||    
T  5502945 actta-agggtcaaaactgtagtttagcc 5502918  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 274
Target Start/End: Complemental strand, 24242167 - 24242017
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca--nnnnnnnaatagggg 223  Q
    ||||||||| | |||||||| |||||||||| |||||  ||| ||||||||||||||||||||||||||||   |||||||||         | ||||||    
T  24242167 tgacacctccgcgttgacccggtcaaaattgatcaaatggtctcttttgcaaaggggctaaaacataggggtttaaattttcattttttttaattagggg 24242068  T
Q  224 gccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    | |||||||||| | |||  ||||||||||||||||||||| |||||||||    
T  24242067 gtcaaaatcgcacctttgtgaaagttagggggtcaaaactgcagtttagcc 24242017  T

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Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 274
Target Start/End: Original strand, 3598851 - 3598980
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggc-aaaattttcannnnnnn-aatagggggccaaaatcgcaacattggta 244  Q
    |||||||||||  ||||||||||| ||||| || ||||||| |||||||| | |||||| |||        |||||||||||||||||||||||||||||    
T  3598851 gtcaaaattggctaaaatgtcactattgcagagaggctaaatcataggggaccaaaattgtcattttttttaatagggggccaaaatcgcaacattggta 3598950  T
Q  245 aagttagggggtcaaaactgtagtttagcc 274  Q
    || |||||||  ||||||||||||||||||    
T  3598951 aatttaggggaccaaaactgtagtttagcc 3598980  T

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Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 14190409 - 14190545
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaac 237  Q
    |||||||| ||||||||||  ||||| ||| ||||||||||||||||||||||||||||   ||||| | |       | |||||| ||||||||||| |    
T  14190409 gttgacccggtcaaaattgaccaaaaggtctcttttgcaaaggggctaaaacataggggtttaaattgtaatttttttattaggggaccaaaatcgcacc 14190508  T
Q  238 attggtaaagttagggggtcaaaactgtagtttagcc 274  Q
     ||   ||||||||||||||||||||| |||||||||    
T  14190509 tttatgaaagttagggggtcaaaactgcagtttagcc 14190545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 274
Target Start/End: Complemental strand, 3597381 - 3597323
Alignment:
Q  216 aatagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||| |||||||||||||||||||| ||||| |||||||| ||||||||||||||||||    
T  3597381 aataaggggccaaaatcgcaacattagtaaacttagggggccaaaactgtagtttagcc 3597323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 14189801 - 14189743
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggg 196  Q
    |||||||| ||||||||||  ||||| ||| ||||||||||||||||||||||||||||    
T  14189801 gttgacccggtcaaaattgaccaaaaggtctcttttgcaaaggggctaaaacatagggg 14189743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 25369281 - 25369338
Alignment:
Q  139 ttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggg 196  Q
    ||||||| ||||||||||  ||||| ||| ||||||||||||| ||||||||||||||    
T  25369281 ttgacccggtcaaaattgaccaaaaggtctcttttgcaaagggactaaaacatagggg 25369338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 8061912 - 8061856
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||||||||||||||| ||||   ||||||||||||| ||||||| |||||||||    
T  8061912 tagggggccaaaatcgcaccattctgaaagttagggggttaaaactgcagtttagcc 8061856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 12406097 - 12406051
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactg 264  Q
    |||||||||||||||||||| |||| ||||||||||||  |||||||    
T  12406097 tagggggccaaaatcgcaactttgggaaagttagggggctaaaactg 12406051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 3333959 - 3333996
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttaggggg 255  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  3333959 tagggggccaaaatcgcaactttggaaaagttaggggg 3333996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 8067452 - 8067508
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    |||||||||||||||||| ||||   ||||||||||||  ||||||| |||||||||    
T  8067452 tagggggccaaaatcgcaccattctgaaagttaggggggtaaaactgcagtttagcc 8067508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 129 - 274
Target Start/End: Original strand, 38613329 - 38613475
Alignment:
Q  129 cacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn-aatagggggcca 227  Q
    |||||| | |||||||| ||||||||||  ||||| ||| ||||||||||||||||||||||||||||   |||||||||        ||||||||||||    
T  38613329 cacctccgcgttgacccggtcaaaattgaccaaaaggtctcttttgcaaaggggctaaaacataggggtttaaattttcattttttttaatagggggcca 38613428  T
Q  228 aaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||||||  ||||||||||||||||||||| |||||||||    
T  38613429 aaatcgcaacattgtgaaagttagggggtcaaaactgcagtttagcc 38613475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 274
Target Start/End: Complemental strand, 38612347 - 38612219
Alignment:
Q  147 gtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnn-aatagggggccaaaatcgcaacattggtaa 245  Q
    ||||||||||  ||||| ||| ||||||||||||||||||||||||||||   |||||||||        ||||||||||||||||||||||||||  ||    
T  38612347 gtcaaaattgaccaaaaggtctcttttgcaaaggggctaaaacataggggtttaaattttcattttttttaatagggggccaaaatcgcaacattgtgaa 38612248  T
Q  246 agttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||||||||||| |||||||||    
T  38612247 agttagggggtcaaaactgcagtttagcc 38612219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 274
Target Start/End: Original strand, 13883801 - 13883926
Alignment:
Q  148 tcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttcannnnnnnaatagggggccaaaatcgcaacattggtaaag 247  Q
    |||||||||  |||||||||||||||||||||||||||||||||| |||||||||| ||||        ||  |||  ||||||||||||||||  |||     
T  13883801 tcaaaattgaccaaaatgtcacttttgcaaaggggctaaaacata-ggggcaaaatattcattttttttattagggatcaaaatcgcaacattgacaaac 13883899  T
Q  248 ttagggggtcaaaactgtagtttagcc 274  Q
    ||| |||||||||||||||||||||||    
T  13883900 ttaaggggtcaaaactgtagtttagcc 13883926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 13882780 - 13882655
Alignment:
Q  150 aaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattttca-nnnnnnnaatagggggccaaaatcgcaacattggtaaagt 248  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||||||||| ||||        | ||||||| ||||||  ||||||||| ||| |    
T  13882780 aaaattgaccaaaatgtcactcttgcaaaggggctaaaacatagggggcaaaatattcattttttttattagggggtcaaaattacaacattggcaaact 13882681  T
Q  249 tagggggtcaaaactgtagtttagcc 274  Q
    |||| | |||||| ||||||||||||    
T  13882680 taggagatcaaaattgtagtttagcc 13882655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 18655885 - 18655948
Alignment:
Q  142 acccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggggcaaaattt 205  Q
    |||||||||||||||||||||| ||||| ||| |||||| | ||||||||||||||||||||||    
T  18655885 acccagtcaaaattggtcaaaaggtcacctttacaaaggagataaaacatagggggcaaaattt 18655948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 274
Target Start/End: Original strand, 23039436 - 23039585
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagggg-gcaaaattttcannnnnnnaataggggg 224  Q
    ||||||||| | |||||||  ||||||||||   ||||||||  |||||||||||||||||||||||||||   |||||||          ||||||||     
T  23039436 tgacacctccgcgttgacctggtcaaaattgacaaaaatgtctgttttgcaaaggggctaaaacataggggtttaaaatttaattttttttaatagggga 23039535  T
Q  225 ccaaaatcgcaacattggtaaagttagggggtcaaaactgtagtttagcc 274  Q
    ||||||||||| |||||  ||||||| ||||| ||||||| |||||||||    
T  23039536 ccaaaatcgcaccattgtcaaagttaaggggttaaaactgcagtttagcc 23039585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 23039273 - 23039205
Alignment:
Q  126 tgacacctcagagttgacccagtcaaaattggtcaaaatgtcacttttgcaaaggggctaaaacatagg 194  Q
    ||||||||| | |||||||  ||||||||||  ||||| |||  |||||||||||||||||||||||||    
T  23039273 tgacacctccgcgttgacctggtcaaaattgaccaaaaggtctgttttgcaaaggggctaaaacatagg 23039205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 255
Target Start/End: Original strand, 28349565 - 28349602
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttaggggg 255  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  28349565 tagggggccaaaatcgcaactttgggaaagttaggggg 28349602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 32417 - 32460
Alignment:
Q  216 aatagggggccaaaatcgcaacattggtaaagttagggggtcaa 259  Q
    |||||||||||||||||||||| ||  |||||||||||||||||    
T  32417 aatagggggccaaaatcgcaacttttataaagttagggggtcaa 32460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 4116 - 4073
Alignment:
Q  216 aatagggggccaaaatcgcaacattggtaaagttagggggtcaa 259  Q
    |||||||||||||||||||||| ||  |||||||||||||||||    
T  4116 aatagggggccaaaatcgcaacttttataaagttagggggtcaa 4073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 3695 - 3649
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactg 264  Q
    |||||||||||||||||||| |||| ||||||||||||  |||||||    
T  3695 tagggggccaaaatcgcaactttgggaaagttagggggctaaaactg 3649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 3695 - 3649
Alignment:
Q  218 tagggggccaaaatcgcaacattggtaaagttagggggtcaaaactg 264  Q
    |||||||||||||||||||| |||| ||||||||||||  |||||||    
T  3695 tagggggccaaaatcgcaactttgggaaagttagggggctaaaactg 3649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 39483 - 39415
Alignment:
Q  138 gttgacccagtcaaaattggtcaaaatgtc-acttttgcaaaggggctaaaacatagggggcaaaattt 205  Q
    ||||||| |||||||||||| ||||| | | ||| ||||||||||||||||||||| ||| | ||||||    
T  39483 gttgaccaagtcaaaattggacaaaaagaccactattgcaaaggggctaaaacataagggactaaattt 39415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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