View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6637_low_14 (Length: 269)
Name: NF6637_low_14
Description: NF6637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6637_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 26 - 259
Target Start/End: Complemental strand, 29719362 - 29719129
Alignment:
| Q |
26 |
cccttaacataaacaaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttcagaagaga |
125 |
Q |
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| T |
29719362 |
cccttaacataaacaaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttcaaaagaga |
29719263 |
T |
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| Q |
126 |
accttgatcatacatgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccacgtgtcccaggccttgtagtgaacat |
225 |
Q |
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| T |
29719262 |
accttgatcatacatgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccacgtgtcccaggccttgtagtgaacat |
29719163 |
T |
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| Q |
226 |
aatatcctgaagtcttgggaacttagtacctttg |
259 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29719162 |
aatatcctgaagtcttgggaacttagtacctttg |
29719129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 259
Target Start/End: Complemental strand, 29690654 - 29690425
Alignment:
| Q |
20 |
aggtgccccttaacataaacaaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttcag |
119 |
Q |
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| T |
29690654 |
aggtgccccttaacataaacaaaggctaaaacaaagaagcgaaactaacataaaactatggaattaatacaaaaagaaaaggggacacttcaaagttc-- |
29690557 |
T |
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| Q |
120 |
aagagaaccttgatcatacatgaaaattaaagaaagcatagtgaaagtggaaaatggtgccgtgtgctcatcaagttccacgtgtcccaggccttgtagt |
219 |
Q |
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| T |
29690556 |
---aaaaccttgatcatacatgaaaatt-----aagaacagtgaaggtggaaaattgtgtggtgtgctcatcaagttccacgtgtcccaggccttgtagt |
29690465 |
T |
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| Q |
220 |
gaacataatatcctgaagtcttgggaacttagtacctttg |
259 |
Q |
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| T |
29690464 |
gaacataatatcctgaagtcttgggaacttagtacctttg |
29690425 |
T |
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