View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6637_low_17 (Length: 239)
Name: NF6637_low_17
Description: NF6637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6637_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 54503469 - 54503386
Alignment:
| Q |
1 |
ttttcttccaaaacttatagacatgcgggagtatatatctaaggaaaatgttaataagtgttttcagaacttttttaggatctt |
84 |
Q |
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| T |
54503469 |
ttttcttccaaaacttatagatatgcgggagtatatatataaggaaaatgttaataagtgttttcagaacttttttaggatctt |
54503386 |
T |
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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 54503287 - 54503247
Alignment:
| Q |
182 |
gtgttctgaagacactcgttaacataaccatatatttagtt |
222 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
54503287 |
gtgttccgaagacactcgttaacataaccatatatttagtt |
54503247 |
T |
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