View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6637_low_8 (Length: 290)
Name: NF6637_low_8
Description: NF6637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6637_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 3655863 - 3655608
Alignment:
| Q |
22 |
tctggagaggcctttatgtatatgggacaattagacttttttctaagagaatgtcctaaaggaatgaaaactatgagtacagggttgttcttgagcacac |
121 |
Q |
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| T |
3655863 |
tctggagaggcctttatgtatatgggacaattagacttttttctaagagaatgtcctaaaggaatgaaaactatgagtacagggttgttcttgagcacac |
3655764 |
T |
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| Q |
122 |
tctcaatagggtttttctttagctcattattagtgactctagtgaacaatgtgaccggtccaaataaaccatggattgcggataatcttgatcaagggag |
221 |
Q |
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| T |
3655763 |
tctcaatagggtttttctttagctcattattagtgactctagtgaacaatgtgaccggtccaaataaaccatggattgcggataatcttgatcaagggag |
3655664 |
T |
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| Q |
222 |
gctctatgatttttattggctattggctatgctaagtgctataaatgtggtgatat |
277 |
Q |
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| T |
3655663 |
gctctatgatttttattggctattggctatgctaagtgctataaatgtggtgatat |
3655608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 3645192 - 3644934
Alignment:
| Q |
19 |
ggatctggagaggcctttatgtatatgggacaattagacttttttctaagagaatgtcctaaaggaatgaaaactatgagtacagggttgttcttgagca |
118 |
Q |
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| T |
3645192 |
ggatcgggagagtctttcatgtatatgggacaactagacttttttctcagagaatgtccagatgggatgaaaactatgagcatgggactattcttgagtt |
3645093 |
T |
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| Q |
119 |
cactctcaatagggtttttctttagctcattattagtgactctagtgaacaatgtgaccggtccaaataaaccatggattgcggataatcttgatcaagg |
218 |
Q |
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| T |
3645092 |
caagatccttaggatttttcttcagctctttattagtgtctacagtgaataaaataacaggtccaagtaaaccatggattgcagataatcttaaccaagg |
3644993 |
T |
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| Q |
219 |
gaggctctatgatttttattggctattggctatgctaagtgctataaatgtggtgatat |
277 |
Q |
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| T |
3644992 |
gaggcttaattattattactggcttttggctatgttgagtgctataaatttgatgatat |
3644934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 41875844 - 41875956
Alignment:
| Q |
40 |
tatatgggacaattagacttttttctaagagaatgtcctaaaggaatgaaaactatgagtacagggttgttcttgagcacactctcaatagggtttttct |
139 |
Q |
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| T |
41875844 |
tatataggacaattggattttttcttaagggaatgtcctaaagggatgaagactatgagcacgggtttgtttttgagtacattgtctttgggatttttct |
41875943 |
T |
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| Q |
140 |
ttagctcattatt |
152 |
Q |
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| T |
41875944 |
ttagctctttatt |
41875956 |
T |
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