View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6638_high_12 (Length: 333)
Name: NF6638_high_12
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 10 - 314
Target Start/End: Complemental strand, 3674499 - 3674191
Alignment:
| Q |
10 |
aggagcagagacacatgtaacgacacgcgtaatgggaacacatggttatgcggctcctgagtacatcatgacaggtatgactctaccatacaaaatgtta |
109 |
Q |
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| T |
3674499 |
aggagaagagacacatgtaacgacacgcgtaatgggaacacatggttatgcggctcctgagtacatcatgacaggtatgactctaccatacaaaatgtta |
3674400 |
T |
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| Q |
110 |
accctgttttatgctgctcctggccgaactctagattatcagggttgttttcgctgataatttgagggttaagaagaag--aannnnnnnnnaatctaat |
207 |
Q |
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| T |
3674399 |
accctgttttatgctgctcctggccgaactctagattatcaggattgttttcgctgataattttagggttaagacgaagaaaaaaaaatttgaatctaat |
3674300 |
T |
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| Q |
208 |
taacccttgcccgattgat--tatataggtcacctcacaacaaagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaaggg |
305 |
Q |
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| T |
3674299 |
taacccttgcccgattgattatatataggtcacctcacaacaaagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaaggg |
3674200 |
T |
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| Q |
306 |
tagtggata |
314 |
Q |
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||||||||| |
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| T |
3674199 |
tagtggata |
3674191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 48554300 - 48554366
Alignment:
| Q |
248 |
aagagtgatgtgtatagctatggagtggttctattagaattgctcacaggaagaagggtagtggata |
314 |
Q |
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| T |
48554300 |
aagagtgatgtgtatagctatggagtagtgttgttggaattgcttacaggaaagagggtagtggata |
48554366 |
T |
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