View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6638_high_3 (Length: 581)
Name: NF6638_high_3
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 70 - 568
Target Start/End: Complemental strand, 16162766 - 16162266
Alignment:
| Q |
70 |
gttttgttagtcatatagagaaaagtccatgaatttcacacaaataatttgcaagaagataggagacaaaccttctttgtttttacacaataagggtttt |
169 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
16162766 |
gttttgttagtcatatagagaaaagtccatgaatttgacacaaataatatgcaagaaggtaggagacaaaccttctttgcttttacacaataagggtttt |
16162667 |
T |
|
| Q |
170 |
agatttttaaaccagtcaaattgcacactcaacgagttatttgtcgtgggtttatccaatccactatgatcaaaataatatttgctatcaagagcagtag |
269 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16162666 |
tgatttttaaaccagtcaaattgcacactcaacgagttatttgtcgtgggtttatccaatccactacgatcaaaataatatttgctatcaagagcagtag |
16162567 |
T |
|
| Q |
270 |
aacctgcataagcaaaattaactcccctttttgtatcaccttgatttttggtgacatttaaagaggccggcaaaaatggcaacccgtatgcctcagctat |
369 |
Q |
| |
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||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16162566 |
aacctccataagcaaaattaactcccctctttgtatcaccttggcttttggtgacatttaaagaggccggcaaaaatggcaacccgtatgcctcagctat |
16162467 |
T |
|
| Q |
370 |
atttaaaataacaaagaacaaatgaaattttcaattagacatgtatcaacatttaaaattattgattttaattataacaactatttaaaatagactatgt |
469 |
Q |
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|
|||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16162466 |
atttaaaataacaacgagcaaataaaattttcaattagacatgtatcaacatttaaaattattgattttaattataacaactatttaaaatagactatgt |
16162367 |
T |
|
| Q |
470 |
taaaggtcttggtagcaatgnnnnnnncttgttgttgtgggttttaatttaagaa--agnnnnnnnnngagttgtaaaattacctatgaaatctatgatg |
567 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
16162366 |
taaaggtcttggtagcaatgtttttttcttgttgttgtggtttttaatttaagaaacaataaaaaaaagagttgtaaaattacctatgaaatctatgatg |
16162267 |
T |
|
| Q |
568 |
a |
568 |
Q |
| |
|
| |
|
|
| T |
16162266 |
a |
16162266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 137 - 482
Target Start/End: Original strand, 31094405 - 31094747
Alignment:
| Q |
137 |
aaaccttctttgtttttacacaataagggttttagatttttaaaccagtcaaattgcacactcaacgagttatttgtcgtgggtttatccaatccactat |
236 |
Q |
| |
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||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| | || ||||||| | || ||| || | ||||||| |
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| T |
31094405 |
aaaccttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatgagttatctttctgtggtgtagagactccactac |
31094504 |
T |
|
| Q |
237 |
gatcaaaataatatttgctatcaagagcagtagaacctgcataagcaaaattaactcccctttttgtatcaccttgatttttggtgacatttaaagaggc |
336 |
Q |
| |
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| ||||| || | | ||||| ||||| ||||| |||||||| |||||||||||| ||||| ||||||||| ||||||||| ||| |||||| |
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| T |
31094505 |
cactgaaata---ttcgatgtcaagtgcagttgaaccggcataagcgaaattaactcccttttttacatcaccttggcttttggtgatattcttagaggc |
31094601 |
T |
|
| Q |
337 |
cggcaaaaatggcaacccgtatgcctcagctatatttaaaataacaaagaacaaatgaaattttcaattagacatgtatcaacatttaaaattattgatt |
436 |
Q |
| |
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| | ||||||||||| || ||||||||||||| | ||||||| | || || | | |||| || ||||| ||| ||||||||||||| ||||||| ||||| |
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| T |
31094602 |
cagtaaaaatggcaagccatatgcctcagctacagttaaaatgagaatgagctagtgaatttgtcaatcagaaatgtatcaacattgaaaattactgatt |
31094701 |
T |
|
| Q |
437 |
ttaattataacaactatttaaaatagactatgttaaaggtcttggt |
482 |
Q |
| |
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||||| ||||||||||| ||||||||| ||| ||| || ||||||| |
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|
| T |
31094702 |
ttaataataacaactatataaaatagattattttagagttcttggt |
31094747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 246 - 447
Target Start/End: Complemental strand, 31251875 - 31251674
Alignment:
| Q |
246 |
aatatttgctatcaagagcagtagaacctgcataagcaaaattaactcccctttttgtatcaccttgatttttggtgacatttaaagaggccggcaaaaa |
345 |
Q |
| |
|
|||||||| |||||| ||||| ||||| ||||| || |||||||||||| ||||| ||||| || | ||||||||| ||| | ||||||| ||||| |
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|
| T |
31251875 |
aatatttgacatcaagtgcagttgaaccggcataggcgaaattaactcccttttttatatcatctgggattttggtgatattcttataggccggtaaaaa |
31251776 |
T |
|
| Q |
346 |
tggcaacccgtatgcctcagctatatttaaaataacaaagaacaaatgaaattttcaattagacatgtatcaacatttaaaattattgattttaattata |
445 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||| | || || | | ||||||||||||| || |||||||||| | |||||||||||||||||||||| |
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|
| T |
31251775 |
tggcaacccatatgcctcagctacaattaaaatgagaatgagctagtgaaattttcaatcggaaatgtatcaaccataaaaattattgattttaattata |
31251676 |
T |
|
| Q |
446 |
ac |
447 |
Q |
| |
|
|| |
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|
| T |
31251675 |
ac |
31251674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 246 - 419
Target Start/End: Original strand, 13003711 - 13003884
Alignment:
| Q |
246 |
aatatttgctatcaagagcagtagaacctgcataagcaaaattaactcccctttttgtatcaccttgatttttggtgacatttaaagaggccggcaaaaa |
345 |
Q |
| |
|
|||||||| |||||| ||||| ||||| |||||||| |||||||||||| ||||| ||||| || | ||||||||| ||| | ||||||| ||||| |
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|
| T |
13003711 |
aatatttgacatcaagtgcagttgaaccggcataagcgaaattaactcccttttttatatcatctgggattttggtgatattcttataggccggtaaaaa |
13003810 |
T |
|
| Q |
346 |
tggcaacccgtatgcctcagctatatttaaaataacaaagaacaaatgaaattttcaattagacatgtatcaac |
419 |
Q |
| |
|
||||||||| ||||||||||||| | ||||||| | || || | | ||||||||||||| || |||||||||| |
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|
| T |
13003811 |
tggcaacccatatgcctcagctacaattaaaatgagaatgagctagtgaaattttcaatcggaaatgtatcaac |
13003884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 276 - 461
Target Start/End: Complemental strand, 27205920 - 27205736
Alignment:
| Q |
276 |
cataagcaaaattaactcccctttttgtatcaccttgatttttggtgacatttaaagaggccggcaaaaatggcaacccgtatgcctcagctatatttaa |
375 |
Q |
| |
|
|||||||||||||||||||| ||||| |||| ||||| ||||||||| |||| ||| ||| |||||||||||||| || ||||||| || | |||| |
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|
| T |
27205920 |
cataagcaaaattaactcccttttttacatcatcttgacttttggtgatatttttgtagggcggtaaaaatggcaacccatacgcctcagttacaattaa |
27205821 |
T |
|
| Q |
376 |
aataacaaagaacaaatgaaattttcaattagacatgtatcaacatttaaaattattgattttaattataacaactatttaaaata |
461 |
Q |
| |
|
| | |||| || | |||| |||||||| ||| || || ||||||| ||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
27205820 |
attgacaacgacttagtgaacttttcaatcagaaat-taccaacattaaaatttattgattttaattataacaactatgtaaaata |
27205736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 27228781 - 27228705
Alignment:
| Q |
137 |
aaaccttctttgtttttacacaataagggttttagatttttaaaccagtcaaattgcacactcaacgagttatttgt |
213 |
Q |
| |
|
|||||||||| ||||||||||| | ||||||| ||| |||||||| |||||||||||| | || ||||||||||| |
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|
| T |
27228781 |
aaaccttcttcacttttacacaatgatggttttatattcttaaaccattcaaattgcacatttaatgagttatttgt |
27228705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 16162813 - 16162782
Alignment:
| Q |
20 |
cgtttgaagaagctatcacactctgttatttc |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
16162813 |
cgtttgaagaagctatcacactctgttatttc |
16162782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 368
Target Start/End: Complemental strand, 27228585 - 27228550
Alignment:
| Q |
333 |
aggccggcaaaaatggcaacccgtatgcctcagcta |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27228585 |
aggccggcaaaaatggcaacccgtatgcctcggcta |
27228550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 25664516 - 25664452
Alignment:
| Q |
137 |
aaaccttctttgtttttacacaataagggttttagatttttaaaccagtcaaattgcacactcaa |
201 |
Q |
| |
|
||||||| |||| ||||||||| || || ||||| || |||||||| ||||||||||||||||| |
|
|
| T |
25664516 |
aaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattgcacactcaa |
25664452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 25670921 - 25670857
Alignment:
| Q |
137 |
aaaccttctttgtttttacacaataagggttttagatttttaaaccagtcaaattgcacactcaa |
201 |
Q |
| |
|
||||||| |||| ||||||||| || || ||||| || |||||||| ||||||||||||||||| |
|
|
| T |
25670921 |
aaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattgcacactcaa |
25670857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 25677326 - 25677262
Alignment:
| Q |
137 |
aaaccttctttgtttttacacaataagggttttagatttttaaaccagtcaaattgcacactcaa |
201 |
Q |
| |
|
||||||| |||| ||||||||| || || ||||| || |||||||| ||||||||||||||||| |
|
|
| T |
25677326 |
aaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattgcacactcaa |
25677262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 25684000 - 25683936
Alignment:
| Q |
137 |
aaaccttctttgtttttacacaataagggttttagatttttaaaccagtcaaattgcacactcaa |
201 |
Q |
| |
|
||||||| |||| ||||||||| || || ||||| || |||||||| ||||||||||||||||| |
|
|
| T |
25684000 |
aaaccttttttgcttttacacatgaatggctttagtttcttaaaccactcaaattgcacactcaa |
25683936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 540 - 568
Target Start/End: Complemental strand, 27228346 - 27228318
Alignment:
| Q |
540 |
tgtaaaattacctatgaaatctatgatga |
568 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27228346 |
tgtaaaattacctatgaaatctatgatga |
27228318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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