View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6638_low_1 (Length: 698)
Name: NF6638_low_1
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 38)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 22 - 687
Target Start/End: Complemental strand, 22458494 - 22457829
Alignment:
| Q |
22 |
tgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttc |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458494 |
tgaaaggtttggctgaacaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttt |
22458395 |
T |
|
| Q |
122 |
aaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagttt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458394 |
taaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagttt |
22458295 |
T |
|
| Q |
222 |
agtgaaattctaaatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgt |
321 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22458294 |
agtgaaaatctaaatatagagttaaaagaagatttgaagataaaaaaaattgtaggtctcggttaccatgatctgtcttacaatctcaagtcatgtttgt |
22458195 |
T |
|
| Q |
322 |
tgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaac |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
22458194 |
tgtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaaggatttgtgaaagatgatatggtaaaaac |
22458095 |
T |
|
| Q |
422 |
attggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgt |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458094 |
attggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgt |
22457995 |
T |
|
| Q |
522 |
gttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatgg |
621 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22457994 |
gttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatgg |
22457895 |
T |
|
| Q |
622 |
ttcgacgcctatcaatagcaatcagatctgataatttcatggaaaatattgaaaactcacaggttc |
687 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
22457894 |
ttcgacgcctatcaatagcaatcagatttgacaatttgatggaaaatattgaaaactcacaggttc |
22457829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 22 - 687
Target Start/End: Complemental strand, 22481475 - 22480810
Alignment:
| Q |
22 |
tgaaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttc |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481475 |
tgaaaggtttggctgaacaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttt |
22481376 |
T |
|
| Q |
122 |
aaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagttt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481375 |
taaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagttt |
22481276 |
T |
|
| Q |
222 |
agtgaaattctaaatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgt |
321 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22481275 |
agtgaaaatctaaatatagagttaaaagaagatttgaagataaaaaaaattgtaggtctcggttaccatgatctgtcttacaatctcaagtcatgtttgt |
22481176 |
T |
|
| Q |
322 |
tgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaac |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
22481175 |
tgtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaaggatttgtgaaagatgatatggtaaaaac |
22481076 |
T |
|
| Q |
422 |
attggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgt |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481075 |
attggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgt |
22480976 |
T |
|
| Q |
522 |
gttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatgg |
621 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22480975 |
gttcatgatctggtgcatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatgg |
22480876 |
T |
|
| Q |
622 |
ttcgacgcctatcaatagcaatcagatctgataatttcatggaaaatattgaaaactcacaggttc |
687 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
22480875 |
ttcgacgcctatcaatagcaatcagatttgacaatttgatggaaaatattgaaaactcacaggttc |
22480810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 25 - 687
Target Start/End: Complemental strand, 22436636 - 22435971
Alignment:
| Q |
25 |
aaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttcaaa |
124 |
Q |
| |
|
||||||| |||||||| ||||||| || ||||||||||||||| ||||||| |||| | ||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
22436636 |
aaggtttaactgaagaaaaatctttagaattgttcaataagaaggcattccataacttgagtggatgttgtccacaaaatcttattgatatatcttccaa |
22436537 |
T |
|
| Q |
125 |
aattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagt |
224 |
Q |
| |
|
||||||| |||||||||| ||||| || |||||||||||| ||| ||||||| ||||||||||||||||||||||| | | |||||||| ||||||||| |
|
|
| T |
22436536 |
aattgttaaaaaatgcaaaggattacctctagcaattgtagtcactggtggtcttttatcttgcaaagatagaaatcctactgaatggtacaagtttagt |
22436437 |
T |
|
| Q |
225 |
gaaattctaaatataga---gttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgt |
321 |
Q |
| |
|
|||| | ||||| ||| || ||| ||| ||| | || || |||| | |||||||||||||| ||||| | |||||||| ||||| | |
|
|
| T |
22436436 |
gaaaatataaatgcagatcagtcaaatgaatattccataataagaaaaattctaggatttagttaccatgatttgccttactacctcaagtcgtgtttct |
22436337 |
T |
|
| Q |
322 |
tgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaac |
421 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| | |||| | ||||| ||| |||||||| |||||||| ||||||||||| || || | || || |
|
|
| T |
22436336 |
tgtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggttcgtgaaagaagagaggggaaggac |
22436237 |
T |
|
| Q |
422 |
attggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgt |
521 |
Q |
| |
|
|||||||||| ||||| | |||||||||| ||| ||| ||| |||| |||||||||| ||||||||||| |||||||||||||||| |||||||||| || |
|
|
| T |
22436236 |
attggaagatattgcaaaaggatatttaatagagttggtcaatagaagtttggtgcatgtagtttcaataagtattgatggaagagtaaaaagttgtcgt |
22436137 |
T |
|
| Q |
522 |
gttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatgg |
621 |
Q |
| |
|
||||||||| |||| |||||| |||||||||| |||| ||| || |||||||||||||||||||||| ||||| | |||| ||||||| | | || |
|
|
| T |
22436136 |
gttcatgatttagtgcatgcaatgatccttgagaaatatgaggatttaagtttttgcaagaatattactgaggacaatcaattttctttaactagagtga |
22436037 |
T |
|
| Q |
622 |
ttcgacgcctatcaatagcaatcagatctgataatttcatggaaaatattgaaaactcacaggttc |
687 |
Q |
| |
|
||||||||||||||| |||| ||| ||| ||||| | |||||| |||||||| |||||| |||| |
|
|
| T |
22436036 |
ctcgacgcctatcaatggcaaccagttcttataatctaatggaaggtattgaaagctcacatgttc |
22435971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 641
Target Start/End: Complemental strand, 22358005 - 22357388
Alignment:
| Q |
24 |
aaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttcaa |
123 |
Q |
| |
|
||||||||| ||| |||||||||||| |||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22358005 |
aaaggtttgactgtagaacaatcttttgagttgttcaataagaaggcattccatgacttaaatggacgttgtccagaaaatcttattgatatatcttcca |
22357906 |
T |
|
| Q |
124 |
aaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttag |
223 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||||| || |||||||| || | || ||||||||||||||||| |
|
|
| T |
22357905 |
aaattgttaaaaaatgcaaaggattaccactagcaattgtagtcattggtggtattttagctcccaaagataaaattccaatggaatggtataagtttag |
22357806 |
T |
|
| Q |
224 |
tgaaattctaaatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttg |
323 |
Q |
| |
|
||||| | ||||| ||||||| | ||| ||| | || || |||| | |||||||||||||| ||||| | |||||||||||||| ||| |
|
|
| T |
22357805 |
tgaaaatataaatgcagagttagaggaatattccataataagaaaaattttaggatttagttaccatgatttgccttactacctcaagtcatgtttcttg |
22357706 |
T |
|
| Q |
324 |
tattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacat |
423 |
Q |
| |
|
|||||||||||||||||||||| | || ||||| | |||| | ||||| ||| |||||||| |||||||| || |||||| | || | | || ||| |
|
|
| T |
22357705 |
tattttggattatatcctgaagactataaagttcattcaaagacattgactcgacaatggattgctgaagggtttgtgaaacaatatggggaaagaacga |
22357606 |
T |
|
| Q |
424 |
tggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgt |
523 |
Q |
| |
|
||||||| |||||||| |||||||||| ||| || || |||| ||||||||||||||| |||||| |||||||||||||||| |||| ||||| |||| |
|
|
| T |
22357605 |
tggaagaggttgcagaaggatatttaaaagagttaatacatagaagtttggtgcaagtagattcaatcagtattgatggaagagtaaaacgttgtcgtgt |
22357506 |
T |
|
| Q |
524 |
tcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatggtt |
623 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||| | | | ||||| |||||| ||||||||| |||| | |||| ||||||| ||| ||| || |
|
|
| T |
22357505 |
tcatgatctagtgcatgaaatgatccttgaaaaacataagcatttaagcttttgcgagaatattactgagggcaaacaattgtctttaactggaatgatt |
22357406 |
T |
|
| Q |
624 |
cgacgcctatcaatagca |
641 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
22357405 |
cgacgcctatcaatagca |
22357388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 24 - 641
Target Start/End: Complemental strand, 22442748 - 22442128
Alignment:
| Q |
24 |
aaaggtttggctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttcaa |
123 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||| |||||||||||| ||||||||| | |
|
|
| T |
22442748 |
aaaggtttgactgtagaacaatctttggagttgttcaataagaaggcatttcatgacttaaacggacgttgtccaaaaaatcttattggtatatcttcca |
22442649 |
T |
|
| Q |
124 |
aaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttag |
223 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| || |||||||||||||||| ||||||||| |||||| |
|
|
| T |
22442648 |
aaattgttgaaaaatgcaatggattaccactagcaattgtagtcattggtggtattttagctcccaaagatagaaatacaattgaatggtatgagtttaa |
22442549 |
T |
|
| Q |
224 |
tgaaattctaaatatag---agttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttg |
320 |
Q |
| |
|
||||| | ||||| || |||| || ||| ||| | | || |||| ||| |||||||||||||| ||| ||| |||||||||||||| |
|
|
| T |
22442548 |
tgaaaatataaatgcagatcagtttaaggaatattccatagtaagaaaaattttaggactcagttaccatgatttgccttgcaacctcaagtcatgtttc |
22442449 |
T |
|
| Q |
321 |
ttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaa |
420 |
Q |
| |
|
|||||||||||||||||||| |||| | | || | | |||| | ||||| ||| |||||||| |||||||| || |||||||| || | | || | |
|
|
| T |
22442448 |
ttgtattttggattatatcccgaagactatgaagcttgttcaaagacattgactcgtcaatggatagctgaagggtttgtgaaagaatatggggaaagga |
22442349 |
T |
|
| Q |
421 |
cattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttg |
520 |
Q |
| |
|
|||||||| | |||||||| |||||||||| || || ||| ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| | |
|
|
| T |
22442348 |
cattggaaaaggttgcagaaggatatttaaaagtgttaatctgtagaagtttggtgcaagtagtttcaaccagtattgatggaagagtaaaaagttgccg |
22442249 |
T |
|
| Q |
521 |
tgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatg |
620 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||| | | | ||||| |||||| ||||||||| |||| | |||| ||||||| ||| ||| |
|
|
| T |
22442248 |
tgttcatgatctagtgcatgaaatgatccttgaaaaacataagcatttaagcttttgcgagaatattactgagggaaaacaattgtctttaactggaatg |
22442149 |
T |
|
| Q |
621 |
gttcgacgcctatcaatagca |
641 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
22442148 |
attcgacgcctatcaatagca |
22442128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 34 - 687
Target Start/End: Complemental strand, 22467944 - 22467291
Alignment:
| Q |
34 |
ctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttcaaaaattgttga |
133 |
Q |
| |
|
|||||||||| || ||||| ||||| || |||||| | ||||| ||||| ||||| |||||||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
22467944 |
ctgaagaacagtccttggaattgtttaaaaagaaggcgttccatgacttggacggagtttgtccagaaaatctttttgacatatcttccaaaattgttga |
22467845 |
T |
|
| Q |
134 |
aaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattcta |
233 |
Q |
| |
|
||| ||||| ||||| || ||||||||||| ||| |||| |||||||||| ||||| |||||||| || ||||||| ||| |||||||||| | || |
|
|
| T |
22467844 |
aaactgcaaaggattacctctagcaattgttgtcaccggtgatattttatctcgcaaaaatagaaatccaattgaatggtctaaatttagtgaaaatata |
22467745 |
T |
|
| Q |
234 |
aatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggat |
333 |
Q |
| |
|
||| |||||||| | | | ||| | || || |||| | |||||||| |||| ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
22467744 |
aatgtagagttagagggatattccacaataagaaaaattttaggatttagttaccataatttaccttacaacctcaagtcatgtttcttgtattttggat |
22467645 |
T |
|
| Q |
334 |
tatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgt |
433 |
Q |
| |
|
|||||||||||| | |||||||| | |||| | |||| ||| |||||||| |||||||| || ||||| || || || | | ||||||||||| || |
|
|
| T |
22467644 |
tatatcctgaagactatatagttcattcaaagacgttgactcgccaatggattgctgaagggtttgtgaaggaagacagggggaggacattggaagaggt |
22467545 |
T |
|
| Q |
434 |
tgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatcta |
533 |
Q |
| |
|
||| || |||||||||| ||| |||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
22467544 |
tgctgaaggatatttaatagagttgatccatagaagtttggtgcaagtagtttcaataagtattgatggaagagtaaaaagttgtcgtgttcatgatcta |
22467445 |
T |
|
| Q |
534 |
gtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctat |
633 |
Q |
| |
|
|| |||||| |||||||||| |||| ||| || |||||||||||||||||||||| ||||| | |||| ||||||| ||| ||| |||||||||||| |
|
|
| T |
22467444 |
gtgcatgcaatgatccttgataaatatgaggatttaagtttttgcaagaatattactgaggacaaacaattgtctttaactggaatgattcgacgcctat |
22467345 |
T |
|
| Q |
634 |
caatagcaatcagatctgataatttcatggaaaatattgaaaactcacaggttc |
687 |
Q |
| |
|
|||||| || | ||||||||||| ||| || ||||||||||||||| |||| |
|
|
| T |
22467344 |
caatagaaactacctctgataatttaatgaaagttattgaaaactcacatgttc |
22467291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 35 - 687
Target Start/End: Complemental strand, 22367919 - 22367264
Alignment:
| Q |
35 |
tgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttcaaaaattgttgaa |
134 |
Q |
| |
|
||||||| ||||||| || ||||||||||||||| | ||||| ||||| | |||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
22367919 |
tgaagaaaaatctttagaattgttcaataagaaggcgttccatgacttgagcggatattgtccagaaaatcttattgatatatcttccaaaattgttgaa |
22367820 |
T |
|
| Q |
135 |
aaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattctaa |
234 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||| ||| || ||||||| |||||||||||||| | ||| |
|
|
| T |
22367819 |
aaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagataggaatccaattgaatggtctaagtttagtgaaaatataa |
22367720 |
T |
|
| Q |
235 |
atatag---agttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttgg |
331 |
Q |
| |
|
|| || ||| ||| ||| ||| | ||| || |||| || |||||||||||||| ||| ||| |||||||||||||| ||||| ||||| |
|
|
| T |
22367719 |
atgcagatcagtcaaaggaatattccatgataaaaaaaattctaggacttagttaccatgatttgccttgcaacctcaagtcatgtttcttgtactttgg |
22367620 |
T |
|
| Q |
332 |
attatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagat |
431 |
Q |
| |
|
|||||||||||||| | | |||| | |||||||||||| ||| |||||||| |||||||| || |||||||| || || | || ||||||||||| |
|
|
| T |
22367619 |
attatatcctgaagactcaaatgttcgttcaaatatattgactcgtcaatggattgctgaagggtttgtgaaagaagaaaggggaatgacattggaagag |
22367520 |
T |
|
| Q |
432 |
gttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatc |
531 |
Q |
| |
|
|||||||| ||| |||||| ||| |||||| ||||| ||||||||| ||||| | || | |||||||||||||| | | ||||| |||||||||||| |
|
|
| T |
22367519 |
gttgcagaaggacatttaatagagttgatccgtagaagtttggtgcgagtagatgggatcactattgatggaagagtagacagttgccgtgttcatgatc |
22367420 |
T |
|
| Q |
532 |
tagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatggttcgacgcct |
631 |
Q |
| |
|
|||| |||||| |||||||| | ||| ||| || ||||| |||||||||| ||||| |||||| |||| ||| || ||| ||| |||||||||| |
|
|
| T |
22367419 |
tagtgcatgcaatgatccttaataaacatgaggatttaagcttttgcaagagtattaccgaggacagacaattgccttcaactggaatgattcgacgcct |
22367320 |
T |
|
| Q |
632 |
atcaatagcaatcagatctgataatttcatggaaaatattgaaaactcacaggttc |
687 |
Q |
| |
|
|||||||||| || ||||||||| | |||||| |||||||| |||||| |||| |
|
|
| T |
22367319 |
atcaatagcatcaagttctgataatctaatggaaggtattgaaagctcacatgttc |
22367264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 34 - 687
Target Start/End: Complemental strand, 22630434 - 22629786
Alignment:
| Q |
34 |
ctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttcaaaaattgttga |
133 |
Q |
| |
|
|||||||||| |||||||| ||||| || ||||| | ||||| ||||| | ||| |||||||||||||||| |||| |||||||| ||||||||||| |
|
|
| T |
22630434 |
ctgaagaacagtctttggaattgtttaaaaagaaagcgttccatgacttggatggattttgtccagaaaatctttttgacatatcttccaaaattgttga |
22630335 |
T |
|
| Q |
134 |
aaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattcta |
233 |
Q |
| |
|
||||||||| ||||| || |||||||||||| ||| |||| |||||||||| |||||| ||||||| || ||||||| |||||||||||||| | || |
|
|
| T |
22630334 |
aaaatgcaaaggattacctctagcaattgtagtcaccggtgatattttatctcgcaaagttagaaatccaattgaatggtctaagtttagtgaaaatata |
22630235 |
T |
|
| Q |
234 |
aatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggat |
333 |
Q |
| |
|
||| |||||||| | ||| ||| | || | |||| | ||||||||||||| ||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
22630234 |
aatgtagagttagaggaatattccacaataagaaaaaatttaggatttagttaccatgatttaccttacaacctcaagtcatgtttcttgtattttggat |
22630135 |
T |
|
| Q |
334 |
tatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgt |
433 |
Q |
| |
|
| |||||||||| | |||||||| | |||| | |||| ||| |||||||| |||||||| || |||||||| | | | || |||||||||||| || |
|
|
| T |
22630134 |
tctatcctgaagactatatagttcgttcaaaggtgttgactcgccaatggatcgctgaagggtttgtgaaagaagtcaagggaagaacattggaagaggt |
22630035 |
T |
|
| Q |
434 |
tgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatcta |
533 |
Q |
| |
|
|| ||| |||||||||| ||| ||| || ||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| ||||||||| |
|
|
| T |
22630034 |
tggagaaggatatttaatagagttggtccgtagaagtttggtgcaagtagtttcaacaagtat--atggaagagtaaaaagttgtcgtgtacatgatcta |
22629937 |
T |
|
| Q |
534 |
gtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctat |
633 |
Q |
| |
|
|| |||||| |||||||||| |||| ||| || |||||||||||||||||||||| ||||| | |||| ||||||| ||| ||| || ||||||||| |
|
|
| T |
22629936 |
gtgcatgcaatgatccttgagaaatatgaggatttaagtttttgcaagaatattattgaggacaagcaattgtctttaactggaatgatttgacgcctat |
22629837 |
T |
|
| Q |
634 |
caatagcaatcagatctgataatttcatggaaaatattgaaaactcacaggttc |
687 |
Q |
| |
|
||||||||| | |||||||||| ||| ||| ||||||||||||||| |||| |
|
|
| T |
22629836 |
caatagcaacta---ctgataatttaatgaaaagtattgaaaactcacatgttc |
22629786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 103 - 587
Target Start/End: Complemental strand, 22635430 - 22634946
Alignment:
| Q |
103 |
atcttattgatatatcttcaaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatac |
202 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||||||| ||||||||| |||| ||||| ||| ||||||||| | |
|
|
| T |
22635430 |
atcttattgatatatcttccaaaattgtcgaaaaatgcaaaggattacctctagcaattgtagtcattggtgatattctatctcgcacggatagaaattc |
22635331 |
T |
|
| Q |
203 |
atcagaatggtataagtttagtgaaattctaaatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtcttac |
302 |
Q |
| |
|
| |||||||| ||||||||||||| | ||||| ||||||| | ||| ||| | ||| || |||| || |||||||||||||| | | | |
|
|
| T |
22635330 |
aatagaatggtcgaagtttagtgaaaatataaatgcagagttagaggaatattccatgataagaaaaattttaggacttagttaccatgatttgccatgc |
22635231 |
T |
|
| Q |
303 |
aatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtga |
402 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||| | |||||||| | |||| | ||||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
22635230 |
tacctcaagtcatgtttcttgtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggttcgtga |
22635131 |
T |
|
| Q |
403 |
aagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatgg |
502 |
Q |
| |
|
|||| || || | || ||||| ||||| |||||||| ||||||||| ||| |||||| |||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
22635130 |
aagaagacaggggaaggacatttgaagaggttgcagaaggatatttagtagagttgatccatagaagtttggtgcaagtagtttcaactagtattgatgg |
22635031 |
T |
|
| Q |
503 |
aagagcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatatt |
587 |
Q |
| |
|
||||| ||||||||| | |||||||||||||| |||| | |||||||||| |||| | | || ||||||||||||||||||||| |
|
|
| T |
22635030 |
aagagtaaaaagttgccgcgttcatgatctagtgcatgaaatgatccttgacaaatttaaggatttaagtttttgcaagaatatt |
22634946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 34 - 687
Target Start/End: Complemental strand, 22353806 - 22353155
Alignment:
| Q |
34 |
ctgaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttcaaaaattgttga |
133 |
Q |
| |
|
||||| ||||||||||||| ||||| || |||||| | |||| ||||| ||||| ||||||| |||||||| || |||||||||| ||||| |||| |
|
|
| T |
22353806 |
ctgaaaaacaatctttggatttgtttaaaaagaaggcgttccgtgacttggacggattttgtccaaaaaatcttttttatatatcttccgaaattattga |
22353707 |
T |
|
| Q |
134 |
aaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaattcta |
233 |
Q |
| |
|
||||||||| ||||| || || ||||||||| |||| ||| |||||||||| |||||||||||||| || ||||||| |||||||||||||| | || |
|
|
| T |
22353706 |
aaaatgcaaaggattacctctcgcaattgtagtcataggtaatattttatctcgcaaagatagaaatccaattgaatggtctaagtttagtgaaaatata |
22353607 |
T |
|
| Q |
234 |
aatatagagttaaaagaagatttgaagatnnnnnnnnttgtaggtctcggttaccatgatttgtctt-acaatctcaagtcatgtttgttgtattttgga |
332 |
Q |
| |
|
||| ||||||| | ||| ||| | || || |||| | |||||||||||||| ||| || | |||||||||||||| |||||||||||| |
|
|
| T |
22353606 |
aatgcagagttagaggaatattccataataagaaaaattttaggatttagttaccatgatttgcctttactacctcaagtcatgtttcttgtattttgga |
22353507 |
T |
|
| Q |
333 |
ttatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatg |
432 |
Q |
| |
|
||||||| |||| | |||| | || ||| ||||| ||| |||||||| ||||| || || |||||||| | | | || ||| ||||||| | |
|
|
| T |
22353506 |
ttatatctcgaagactacgaagtttattcagatacattgactcgtcaatggattgctgaggggtttgtgaaagaatacgggggaaggacaatggaagagg |
22353407 |
T |
|
| Q |
433 |
ttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatct |
532 |
Q |
| |
|
||||||| |||||||||| ||| || ||| |||| ||||||||||||||| |||| | |||||||||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
22353406 |
ttgcagaaggatatttaaaagagttaatccatagaagtttggtgcaagtagattcagtcagtattgatggaagagtaaaaagttgtcgtgttcacgatct |
22353307 |
T |
|
| Q |
533 |
agtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatggttcgacgccta |
632 |
Q |
| |
|
||| |||| | |||||||| ||||| ||| || |||||||||||||||||||||| |||| | | ||| || |||| ||| ||| || |||||||| |
|
|
| T |
22353306 |
agtgcatgaaatgatccttagaaaatatgaggatttaagtttttgcaagaatatta-cgagca--aacaactgtcattaactggaatgatttgacgccta |
22353210 |
T |
|
| Q |
633 |
tcaatagcaatcagatctgataatttcatggaaaatattgaaaactcacaggttc |
687 |
Q |
| |
|
|||||||||| || |||||||| || ||| ||| ||||||||||||||| |||| |
|
|
| T |
22353209 |
tcaatagcaactagttctgataagttaatgaaaagtattgaaaactcacatgttc |
22353155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 283 - 641
Target Start/End: Complemental strand, 22430914 - 22430556
Alignment:
| Q |
283 |
gttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatg |
382 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||| ||| | ||||||| | |||| | ||| | | | ||||| |
|
|
| T |
22430914 |
gttaccatgatttgccttgcaacctcaagtcatgtttcttgtattttggattatatcctaaagactatatagtttattcaaagacattaacttgtcaatg |
22430815 |
T |
|
| Q |
383 |
gatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagta |
482 |
Q |
| |
|
||| |||||||| || |||||||| | | | || |||||| |||| |||||||| |||||||||| ||| |||||| |||| |||||||||||||| |
|
|
| T |
22430814 |
gattgctgaagggtttgtgaaagaaaaaacgggaaggacattgaaagaggttgcagaaggatatttaatagagttgatccatagaagtttggtgcaagta |
22430715 |
T |
|
| Q |
483 |
gtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaaga |
582 |
Q |
| |
|
| |||||| |||||||||||||||| || ||||||| |||||||||||||||| |||| | |||||||| |||||| ||| || ||||| ||||| ||| |
|
|
| T |
22430714 |
gattcaataagtattgatggaagagtaagaagttgtcgtgttcatgatctagtgcatgaaatgatccttaaaaaatatgaggatttaagcttttgtaagt |
22430615 |
T |
|
| Q |
583 |
atattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagca |
641 |
Q |
| |
|
|||| | |||| | | |||| | ||||| ||| ||| ||| |||||||||||||||| |
|
|
| T |
22430614 |
atatcaccgagaacaatcaattgtatttaactggaatgattcaacgcctatcaatagca |
22430556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 36 - 228
Target Start/End: Complemental strand, 22431164 - 22430972
Alignment:
| Q |
36 |
gaagaacaatctttggagttgttcaataagaagacattccacgacttaaacggacgttgtccagaaaatcttattgatatatcttcaaaaattgttgaaa |
135 |
Q |
| |
|
|||||| ||||||| || |||||||||||||| ||||| ||||| | |||| |||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
22431164 |
gaagaaaaatctttagaattgttcaataagaaagtgttccatgacttgagcggatattgtccagaaaatcttatagatatatcttccaaaattgttgaaa |
22431065 |
T |
|
| Q |
136 |
aatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagatagaaatacatcagaatggtataagtttagtgaaa |
228 |
Q |
| |
|
||||||||||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||| ||| || ||||||| |||||||||||||| |
|
|
| T |
22431064 |
aatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagataggaatccaattgaatggtctaagtttagtgaaa |
22430972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 312 - 642
Target Start/End: Complemental strand, 22620599 - 22620269
Alignment:
| Q |
312 |
tcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaaagatgata |
411 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||| || || |||| | |||| | |||||||||||||||||| |||||||| || || ||||| || | |
|
|
| T |
22620599 |
tcatgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaa |
22620500 |
T |
|
| Q |
412 |
gcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaa |
511 |
Q |
| |
|
| | || || |||||||| |||||||| ||||| |||||||| |||||| |||| |||||||||||||| |||| | || || ||||||| | |||| |
|
|
| T |
22620499 |
gggggaatactttggaagaagttgcagaaggatacttaacagagttgatccatagaagtttggtgcaagtatcttcactaagaatcgatggaaaaacaaa |
22620400 |
T |
|
| Q |
512 |
aagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatcttta |
611 |
Q |
| |
|
||||||||| |||||||||||| | | | |||| |||||||| ||||| || |||||||||||||| ||||||| || ||| || ||||||||| |
|
|
| T |
22620399 |
aagttgttgcgttcatgatctaatacgtatgatgatacttgaaaagtgtgaggatctaagtttttgcaagtatattagtgaagattgtcattcatcttta |
22620300 |
T |
|
| Q |
612 |
agtgggatggttcgacgcctatcaatagcaa |
642 |
Q |
| |
|
|||| | |||||||||||||||||||| |
|
|
| T |
22620299 |
agtgaagttactcgacgcctatcaatagcaa |
22620269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 304 - 638
Target Start/End: Complemental strand, 22656777 - 22656443
Alignment:
| Q |
304 |
atctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggctgaaggattcgtgaa |
403 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||| || | |||| |||| | | |||| ||||||||||| |||||||| || ||||| |
|
|
| T |
22656777 |
atcttaagtcatgtttgttgtattttggaatatatccagaagattatgaagttgaatcaaagagagtgatacggcaatggatagctgaaggttttgtgaa |
22656678 |
T |
|
| Q |
404 |
agatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatgga |
503 |
Q |
| |
|
||| || || | ||||| |||||||| |||||||| |||||||||||||| ||||| | || ||||||| |||||| ||| |||| ||||| ||| |
|
|
| T |
22656677 |
agaagaaagggggaaaactttggaagaagttgcagaaggatatttaacagagttgattcgccgatgtttggtacaagtatcctcagttagaattgacgga |
22656578 |
T |
|
| Q |
504 |
agagcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaat |
603 |
Q |
| |
|
| | | |||||||||||||| |||||| || | ||| ||||||||||||| ||||| || |||||||| |||||| ||||||| | |||| ||| | |
|
|
| T |
22656577 |
aaaactaaaagttgttgtgtccatgatttaatacatatgatgatccttgaaaagtgtgaggatttaagtttctgcaagcatattagtgcagatggccatt |
22656478 |
T |
|
| Q |
604 |
catctttaagtgggatggttcgacgcctatcaata |
638 |
Q |
| |
|
||||| ||||||| || ||||||||||||||||| |
|
|
| T |
22656477 |
catctataagtggaattattcgacgcctatcaata |
22656443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 283 - 581
Target Start/End: Complemental strand, 30989037 - 30988739
Alignment:
| Q |
283 |
gttaccatgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatg |
382 |
Q |
| |
|
||||| |||||||| ||||| |||||||||||| ||||||||||||||| ||||||| |||| || | |||| |||| | ||||||||| ||||| |
|
|
| T |
30989037 |
gttacgatgatttgccttactctctcaagtcatgcttgttgtattttggaatatatccagaagattatgaagttaaatcaaagagattgattcgacaatg |
30988938 |
T |
|
| Q |
383 |
gatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagta |
482 |
Q |
| |
|
| | |||||||| |||||||| || || || | || || |||||||| |||||||| |||||||||||||| |||||| |||| | |||||||||||| |
|
|
| T |
30988937 |
ggtagctgaagggttcgtgaaggaggaaagagggaagactttggaagacgttgcagaaggatatttaacagagttgatccatagaagcttggtgcaagta |
30988838 |
T |
|
| Q |
483 |
gtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaag |
581 |
Q |
| |
|
||| |||| ||||||| | ||| ||| ||||| |||||||||||||| | | | ||||||||||||||| ||| || |||| |||||||||| |
|
|
| T |
30988837 |
tcttcggttagagttgatggtaaagctaaaggttgtcgtgttcatgatctaatacgcgatatgatccttgaaaaatttgaggatttaaatttttgcaag |
30988739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 420 - 588
Target Start/End: Complemental strand, 37930467 - 37930298
Alignment:
| Q |
420 |
acattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgtt |
519 |
Q |
| |
|
||||||||| | ||||| || |||||||||| ||| || ||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
37930467 |
acattggaaaaggttgcggaaggatatttaaaagagttaatctgtagaagtttggtgcaagtagtttcaaccggtattgatggaagagtaaaaagttgtc |
37930368 |
T |
|
| Q |
520 |
gtgttcatgatctagtccatgcattgatcctt-gaaaaatgtgaagaattaagtttttgcaagaatatta |
588 |
Q |
| |
|
|||||||||||||||| |||| | |||||||| || |||| | || |||||||||||| ||||||||| |
|
|
| T |
37930367 |
gtgttcatgatctagtgcatgaaatgatcctttgacaaatttatggatttaagtttttgcgagaatatta |
37930298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 289 - 533
Target Start/End: Original strand, 21946364 - 21946608
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggc |
388 |
Q |
| |
|
|||||||| ||| | ||||||||||||| ||||| ||||||||| ||||||| |||| || | |||| | || | | ||||||| |||||||| || |
|
|
| T |
21946364 |
atgatttgccttgctatctcaagtcatgcttgttttattttggagtatatccagaagattatgaagttaaatcgaagagagtgattcgacaatggatagc |
21946463 |
T |
|
| Q |
389 |
tgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttca |
488 |
Q |
| |
|
|||||| || ||||| || || || | || || |||||||| || ||||| |||||||||||||| |||||| |||| | |||| |||||| |||| |
|
|
| T |
21946464 |
tgaagggtttgtgaaggaggaaagagggaagactttggaagaagtggcagaaggatatttaacagagttgatccatagaagcctggttcaagtatcttca |
21946563 |
T |
|
| Q |
489 |
attagtattgatggaagagcaaaaagttgttgtgttcatgatcta |
533 |
Q |
| |
|
|||| |||||||| | ||| ||| ||||| |||||||||||||| |
|
|
| T |
21946564 |
cttagaattgatggtaaagctaaaggttgtcgtgttcatgatcta |
21946608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 423 - 611
Target Start/End: Complemental strand, 22647776 - 22647588
Alignment:
| Q |
423 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
522 |
Q |
| |
|
|||||||| |||||||| |||||||||| || |||||| |||| ||||||| |||||| |||| |||| |||||||||| | | |||||||| |||| |
|
|
| T |
22647776 |
ttggaagaagttgcagaacgatatttaactgagttgatccatagaagtttggttcaagtatcttcagttagaattgatggaaaaactaaaagttgctgtg |
22647677 |
T |
|
| Q |
523 |
ttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatcttta |
611 |
Q |
| |
|
|||||||||| | ||| ||||||||||||| |||| || ||||||| |||||| ||||||| || ||||| | ||||||||| |
|
|
| T |
22647676 |
ttcatgatctgatacatatgatgatccttgaaaagagtgaggatataagtttctgcaagcatattagtgaagatgatctttcatcttta |
22647588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 289 - 635
Target Start/End: Original strand, 21937893 - 21938239
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggc |
388 |
Q |
| |
|
|||||||| ||||| ||||||||||||| ||||||||||||||| ||||||| |||| || | | || |||| | | | ||||| |||||||| || |
|
|
| T |
21937893 |
atgatttgccttactatctcaagtcatgcttgttgtattttggagtatatccagaagattttgaaattagaccaaagagagtcattcgacaatggatagc |
21937992 |
T |
|
| Q |
389 |
tgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttca |
488 |
Q |
| |
|
||||||||| ||||| || || | | ||| || ||||||| || ||||| |||||| ||||||| ||||| |||| | |||| |||||| ||| |
|
|
| T |
21937993 |
tgaaggatttgtgaaggaggaaaagggaaagactatggaagaagtggcagagggatatctaacagagttgatacatagaagcctggttcaagtatcctca |
21938092 |
T |
|
| Q |
489 |
attagtattgatggaagagcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatatta |
588 |
Q |
| |
|
|||| |||||||| | ||| ||| ||||| |||||||||||||| | | || |||||||||||||| ||| || || | |||||||||| |||| | |
|
|
| T |
21938093 |
cttagaattgatggcaaagctaaaggttgtcgtgttcatgatctaatacgtgatatgatccttgaaaaagatgaggattttaatttttgcaagcatatca |
21938192 |
T |
|
| Q |
589 |
gcgaggatgaccaatcatctttaagtgggatggttcgacgcctatca |
635 |
Q |
| |
|
| || |||| ||| ||| |||||||| || ||||| ||||||||| |
|
|
| T |
21938193 |
gtgatgatggacaaagatccttaagtggaatagttcggcgcctatca |
21938239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 289 - 638
Target Start/End: Original strand, 22180157 - 22180506
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggc |
388 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||||||| || | || | |||| | || | | | | ||| ||||||| || |
|
|
| T |
22180157 |
atgatttgccttactatctcaagtcatgtttgttgtattttggagtatatccagaggattatgaagttaaatcgaagagagtaactcgaaaatggatagc |
22180256 |
T |
|
| Q |
389 |
tgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttca |
488 |
Q |
| |
|
|||||| || ||||| || || | | ||||||| ||||||| || ||||| |||||| ||||||| |||||| |||| | |||| |||||| ||| |
|
|
| T |
22180257 |
tgaagggtttgtgaaggaggaaaagggaaaaacaatggaagaagtggcagagggatatctaacagagttgatccatagaagcctggttcaagtatcttcg |
22180356 |
T |
|
| Q |
489 |
attagtattgatggaagagcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatatta |
588 |
Q |
| |
|
|||| |||||||| | ||| ||| ||||| |||||||||||||| | | || |||||||| ||||| ||| || || | |||||||||| |||||| |
|
|
| T |
22180357 |
cttagaattgatggcaaagctaaaggttgtcgtgttcatgatctaatacgtgatatgatccttcaaaaaaatgaggattttaatttttgcaagcatatta |
22180456 |
T |
|
| Q |
589 |
gcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaata |
638 |
Q |
| |
|
| || |||| || ||| |||||||| || ||||| |||||||||||| |
|
|
| T |
22180457 |
gtgatgatggacagatatccttaagtggaatagttcggcgcctatcaata |
22180506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 531
Target Start/End: Original strand, 22115825 - 22116067
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggc |
388 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| |||| || |||| || | |||| |||| | | | | ||| |||||||| || |
|
|
| T |
22115825 |
atgatttgccttactatctcaagtcatgtttgttgtattttggagtatacccagaagattttgaagttaaatcaaagagaatcactcgacaatggatagc |
22115924 |
T |
|
| Q |
389 |
tgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttca |
488 |
Q |
| |
|
|||||| || ||||| || || || | ||| || |||| || || ||||| |||||| ||||||| |||||| |||| || |||| |||||| ||| |
|
|
| T |
22115925 |
tgaagggtttgtgaaggaggaaaggggaaagactatggatgaagtggcagagggatatataacagagttgatccatagaagtatggttcaagtatcttcg |
22116024 |
T |
|
| Q |
489 |
attagtattgatggaagagcaaaaagttgttgtgttcatgatc |
531 |
Q |
| |
|
|||| |||||||| | ||| ||| ||||| |||||||||||| |
|
|
| T |
22116025 |
cttagaattgatggcaaagctaaaggttgtcgtgttcatgatc |
22116067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 289 - 533
Target Start/End: Original strand, 22053446 - 22053690
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatattgattcggcaatggatggc |
388 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| ||||||||||||||| ||||||| |||| || | |||| | |||| | ||||||| |||||||| || |
|
|
| T |
22053446 |
atgatttgccttactatctcgagtcatgcttgttgtattttggagtatatccagaagattatgaagttaattcaaagcgagtgattcgacaatggatagc |
22053545 |
T |
|
| Q |
389 |
tgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttca |
488 |
Q |
| |
|
||||| || ||||| || || | | || || |||||||| || ||||| ||||||||| |||| |||||| |||| | |||| |||||| |||| |
|
|
| T |
22053546 |
agaagggtttgtgaaggaggaaaaggggaagactttggaagaagtggcagaaggatatttatcagagttgatccatagaagcctggttcaagtatcttca |
22053645 |
T |
|
| Q |
489 |
attagtattgatggaagagcaaaaagttgttgtgttcatgatcta |
533 |
Q |
| |
|
|||| |||||||| | ||| ||| | ||| |||||||||||||| |
|
|
| T |
22053646 |
cttagaattgatggcaaagctaaaggatgtcgtgttcatgatcta |
22053690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 185
Target Start/End: Complemental strand, 22620907 - 22620753
Alignment:
| Q |
34 |
ctgaagaacaatctttggagttgttcaataagaagacattccac---gacttaaacggacgttgtccagaaaatcttattgatatatcttcaaaaattgt |
130 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||| ||| | ||||| | ||| |||||||| || |||| |||||||||||||| |||||| |
|
|
| T |
22620907 |
ctgaggaacaatcttttgagttgttcaataagaaggtatttcgatttgactttgatggaagttgtccaaaagatctaattgatatatcttccgaaattgc |
22620808 |
T |
|
| Q |
131 |
tgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatct |
185 |
Q |
| |
|
| ||||||||| || || ||||||||||||||| | |||||||| |||||||| |
|
|
| T |
22620807 |
tagaaaatgcaagggtttaccactagcaattgtagccgttggtggtcttttatct |
22620753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 22028740 - 22028796
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
345 |
Q |
| |
|
|||||||| ||||| |||||||| |||| ||||||||||||||| ||||||| |||| |
|
|
| T |
22028740 |
atgatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaag |
22028796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 22035257 - 22035313
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
345 |
Q |
| |
|
|||||||| ||||| |||||||| |||| ||||||||||||||| ||||||| |||| |
|
|
| T |
22035257 |
atgatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaag |
22035313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 22105448 - 22105504
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
345 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||| |||||| ||||||| |||| |
|
|
| T |
22105448 |
atgatttgccttactatctcaagtcatgcttgttgtactttggagtatatccagaag |
22105504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 22187465 - 22187501
Alignment:
| Q |
38 |
agaacaatctttggagttgttcaataagaagacattc |
74 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22187465 |
agaacaatctttggagttgttcaataagaaggcattc |
22187501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 22187728 - 22187784
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
345 |
Q |
| |
|
|||||||| ||||| |||||||| |||| ||||||||||||||| ||||||| |||| |
|
|
| T |
22187728 |
atgatttgccttactatctcaagccatgcttgttgtattttggagtatatccagaag |
22187784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 21930899 - 21930934
Alignment:
| Q |
39 |
gaacaatctttggagttgttcaataagaagacattc |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21930899 |
gaacaatctttggagttgttcaataagaaggcattc |
21930934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 74
Target Start/End: Original strand, 21937631 - 21937666
Alignment:
| Q |
39 |
gaacaatctttggagttgttcaataagaagacattc |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21937631 |
gaacaatctttggagttgttcaataagaaggcattc |
21937666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 74
Target Start/End: Complemental strand, 30989297 - 30989258
Alignment:
| Q |
35 |
tgaagaacaatctttggagttgttcaataagaagacattc |
74 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
30989297 |
tgaacaacaatctttggagttgttcaataagaaggcattc |
30989258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 423 - 533
Target Start/End: Original strand, 21931295 - 21931405
Alignment:
| Q |
423 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
522 |
Q |
| |
|
|||||||| || ||||| |||||||||||||| |||||| |||| | | || |||||| |||| |||| |||||||| | ||| ||| ||||| ||| |
|
|
| T |
21931295 |
ttggaagaagtggcagaaggatatttaacagagttgatccatagaagcctcgttcaagtatcttcacttagaattgatggcaaagctaaaggttgtcgtg |
21931394 |
T |
|
| Q |
523 |
ttcatgatcta |
533 |
Q |
| |
|
||||||||||| |
|
|
| T |
21931395 |
ttcatgatcta |
21931405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 578
Target Start/End: Complemental strand, 22614842 - 22614708
Alignment:
| Q |
444 |
tatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatctagtccatgcat |
543 |
Q |
| |
|
|||||| |||| ||||| | |||| ||||||||||| | ||| |||| ||||||||||| || ||||||||| |||||||||||||| | | || |
|
|
| T |
22614842 |
tatttatcagagttgattaatagaagtttggtgcaaatctcttcgattaatattgatggaaaagttaaaagttgtcgtgttcatgatctattacgtgtga |
22614743 |
T |
|
| Q |
544 |
tgatccttgaaaaatgtgaagaattaagtttttgc |
578 |
Q |
| |
|
||||| ||||||||| | | || |||||||||||| |
|
|
| T |
22614742 |
tgatctttgaaaaatttaaggatttaagtttttgc |
22614708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 22628182 - 22628096
Alignment:
| Q |
368 |
attgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacaga |
454 |
Q |
| |
|
||||||||| |||| ||| ||||||||||| |||||||| || || | |||||| || ||||| || |||| |||||||||||||| |
|
|
| T |
22628182 |
attgattcgacaattgatagctgaaggatttgtgaaagaagaaaggggaaaaactttcgaagaagtcacagaaggatatttaacaga |
22628096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 67
Target Start/End: Original strand, 22028477 - 22028506
Alignment:
| Q |
38 |
agaacaatctttggagttgttcaataagaa |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
22028477 |
agaacaatctttggagttgttcaataagaa |
22028506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 289 - 345
Target Start/End: Original strand, 21931161 - 21931217
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaag |
345 |
Q |
| |
|
|||||||| ||||| |||||||| |||| || |||||||||||| ||||||| |||| |
|
|
| T |
21931161 |
atgatttgccttactatctcaagccatgcttcttgtattttggagtatatccagaag |
21931217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 21946100 - 21946136
Alignment:
| Q |
37 |
aagaacaatctttggagttgttcaataagaagacatt |
73 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
21946100 |
aagaacaatctttggagttgtttaataagaaggcatt |
21946136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 22614997 - 22614949
Alignment:
| Q |
289 |
atgatttgtcttacaatctcaagtcatgtttgttgtattttggattata |
337 |
Q |
| |
|
|||||||| ||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
22614997 |
atgatttgccttactatcttagatcatgtttgttgtattttggattata |
22614949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 642
Target Start/End: Original strand, 34990046 - 34990310
Alignment:
| Q |
378 |
caatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgc |
477 |
Q |
| |
|
|||||||| |||||||| || |||||||| || || | || || |||||||| |||| ||| ||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
34990046 |
caatggatagctgaagggtttgtgaaagaggaaagtgggaagactttggaagaagttgaagaaagatatttaacagagttgattcgtagaagtttggtgc |
34990145 |
T |
|
| Q |
478 |
aagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttg |
577 |
Q |
| |
|
||||| ||| |||| |||||||||| | | | ||||||||||||||||||||| | ||| ||||||||||||| ||||| || ||||||||||| |
|
|
| T |
34990146 |
aagtatcctcagttagcattgatggaaaaactagaagttgttgtgttcatgatctgatacatatgatgatccttgaaaagtgtgaggatttaagtttttg |
34990245 |
T |
|
| Q |
578 |
caagaatattagcgaggatgaccaatcatctttaagtgggatggttcgacgcctatcaatagcaa |
642 |
Q |
| |
|
|||| || | | || || || || |||||||||||||| | | |||||||||||||||||| |
|
|
| T |
34990246 |
caagcatttcaatgatgacgatcattcatctttaagtggaactatcagacgcctatcaatagcaa |
34990310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 423 - 642
Target Start/End: Original strand, 34976245 - 34976464
Alignment:
| Q |
423 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
522 |
Q |
| |
|
|||||||| |||||| | |||||||||||||| ||||| || || |||||||||||||| ||| |||| |||||||||| | ||||||||||||| |
|
|
| T |
34976245 |
ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatggaaagcctaaaagttgttgtg |
34976344 |
T |
|
| Q |
523 |
ttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatggt |
622 |
Q |
| |
|
|||||||||| | | | ||||||||||||| ||||| || ||||||||||||||| || | | || |||| || |||||||||||||| | | |
|
|
| T |
34976345 |
ttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaactat |
34976444 |
T |
|
| Q |
623 |
tcgacgcctatcaatagcaa |
642 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
34976445 |
tagacgcctatcaatagcaa |
34976464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 423 - 642
Target Start/End: Original strand, 34983356 - 34983575
Alignment:
| Q |
423 |
ttggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtg |
522 |
Q |
| |
|
|||||||| |||||| | |||||||||||||| ||||| || || |||||||||||||| ||| |||| |||||||||| | ||||||||||||| |
|
|
| T |
34983356 |
ttggaagaagttgcaaaaggatatttaacagagttgattcgtcgaagtttggtgcaagtatcctcagttagaattgatggaaagcctaaaagttgttgtg |
34983455 |
T |
|
| Q |
523 |
ttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattagcgaggatgaccaatcatctttaagtgggatggt |
622 |
Q |
| |
|
|||||||||| | | | ||||||||||||| ||||| || ||||||||||||||| || | | || |||| || |||||||||||||| | | |
|
|
| T |
34983456 |
ttcatgatctgatacgtatgatgatccttgaaaagtgtgaggatttaagtttttgcaagcatttcaatgaagatggtcattcatctttaagtggaactat |
34983555 |
T |
|
| Q |
623 |
tcgacgcctatcaatagcaa |
642 |
Q |
| |
|
| |||||||||||||||||| |
|
|
| T |
34983556 |
tagacgcctatcaatagcaa |
34983575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 370 - 532
Target Start/End: Complemental strand, 2305131 - 2304969
Alignment:
| Q |
370 |
tgattcggcaatggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagagg |
469 |
Q |
| |
|
||||||| || ||||| |||||||| || ||||| || || || | || || |||||||| |||||||| ||||||||| |||| ||||| || || | |
|
|
| T |
2305131 |
tgattcgacagtggatagctgaagggtttgtgaaggaggaaagtgggaagactttggaagaagttgcagaaggatatttatcagagttgattcgtcgaag |
2305032 |
T |
|
| Q |
470 |
tttggtgcaagtagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatct |
532 |
Q |
| |
|
||||||||||||| ||| |||| |||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
2305031 |
tttggtgcaagtatcctcagttagcattgatggaaaatctaaaagttgttgtgttcatgatct |
2304969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 589
Target Start/End: Complemental strand, 872224 - 872150
Alignment:
| Q |
515 |
ttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattag |
589 |
Q |
| |
|
|||| |||||||||||||| | |||| |||||||||||||||| ||| || |||| |||||||||| ||||||| |
|
|
| T |
872224 |
ttgtcgtgttcatgatctactacatgatttgatccttgaaaaatttgaggatttaaatttttgcaagcatattag |
872150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 589
Target Start/End: Complemental strand, 1233501 - 1233427
Alignment:
| Q |
515 |
ttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaagaatattag |
589 |
Q |
| |
|
|||| |||||||||||||| | |||| |||||||||||||||| ||| || |||| |||||||||| ||||||| |
|
|
| T |
1233501 |
ttgtcgtgttcatgatctactacatgatttgatccttgaaaaatttgaggatttaaatttttgcaagcatattag |
1233427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 581
Target Start/End: Original strand, 40580766 - 40580966
Alignment:
| Q |
381 |
tggatggctgaaggattcgtgaaagatgatagcgtaaaaacattggaagatgttgcagatggatatttaacagatttgatcagtagaggtttggtgcaag |
480 |
Q |
| |
|
||||| |||||||| || ||||| || || || | ||| || |||||||| ||||| || | ||||||||| || ||||| || | |||||||||||| |
|
|
| T |
40580766 |
tggatagctgaagggtttgtgaaggaggaaagtggaaagactttggaagaagttgctgaagtatatttaactgagttgattcgtcgtagtttggtgcaag |
40580865 |
T |
|
| Q |
481 |
tagtttcaattagtattgatggaagagcaaaaagttgttgtgttcatgatctagtccatgcattgatccttgaaaaatgtgaagaattaagtttttgcaa |
580 |
Q |
| |
|
|| |||||||| |||||||||| | | |||||||||| |||||| ||| | | | | |||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
40580866 |
tatcctcaattagaattgatggaaaaactaaaagttgttttgttcacgatttgatacgtatgatgatccatgaaaagtgtgaggaattaagtttttgcaa |
40580965 |
T |
|
| Q |
581 |
g |
581 |
Q |
| |
|
| |
|
|
| T |
40580966 |
g |
40580966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University