View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6638_low_10 (Length: 388)
Name: NF6638_low_10
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 376
Target Start/End: Complemental strand, 191567 - 191210
Alignment:
| Q |
20 |
agtaggaacattgcttttctccatactcaaactactatctatcgggnnnnnnnn-tgcgggatcactcttccaacaggtgaatggtgtacaaataatgtt |
118 |
Q |
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| T |
191567 |
agtaggaacattgcttttctccatactcaaactactatctatcgggaaaaaaaaatgcgggatcactcttccaacaggtgaatggtgtacaaataatgtt |
191468 |
T |
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| Q |
119 |
gttgaagattgaagttttaaagttattttaaggatcttttttgttccaaggaaaatattgtgcatcctactatgatcgtggatcctaatcctctagggga |
218 |
Q |
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| T |
191467 |
gttgaagattgaagttttaaagttattttaaggatcttttttgttccaaggaaaatattgtgcatcctactatgatcgtggatcctaatcctctagggga |
191368 |
T |
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| Q |
219 |
agtgcacaagacaagcttattggtgttcattagtaacaaagagatttatcaagctctcatgagcatgaagtcctacaaagttccaggtctagatgaattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
191367 |
agtgcacaagacaagcttattggtgttcattagtaacaaagagatttatcaagctctcatgagcatgaagtcctacaaagttccaggtctagatgaattc |
191268 |
T |
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| Q |
319 |
caaccaatcttttataagatgttttggggggttattggtaataatgtatgctcctttg |
376 |
Q |
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| T |
191267 |
caaccaatcttttataagatgttttgggaggttattggtaataatgtatgctcctttg |
191210 |
T |
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