View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6638_low_14 (Length: 314)
Name: NF6638_low_14
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_low_14 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 78 - 314
Target Start/End: Original strand, 38607744 - 38607980
Alignment:
| Q |
78 |
tacttggcacgcttacgaatcccaaagattcgaaaactttaaacctctaacaactgcgtaacaaactcacacgattacaaaatctctctaaccgtttcac |
177 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38607744 |
tacttggcacgcttacaaatcccaaagattcgaaaactttaaacctctaacaaccgcgtaacaaactcacacgattacaaaatctctctaacagtttcac |
38607843 |
T |
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| Q |
178 |
tcccccgcgcgcgcgtatataagtacttcactctgcatttcatcctcattccattcattttccctctctcagaattgaaatcaaatcttcaatcactgct |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38607844 |
tcccccgcgcgcgcgtatataagtacttcactctgcatttcatcctcgttccattcattttccctctctcagaattgaaatcaaatcttcaatcactgct |
38607943 |
T |
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| Q |
278 |
tcttctactttttctctaacaaccatggcaagctctt |
314 |
Q |
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|||||||||||||||| ||||||||||| |||||||| |
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| T |
38607944 |
tcttctactttttctcaaacaaccatggaaagctctt |
38607980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 38792448 - 38792763
Alignment:
| Q |
1 |
aaaaacattgattaaaagatgaatcattaattttcattttctatttttaccatttccattttnnnnnnnnnnnnnnn---tacttggcacgcttacgaat |
97 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||| |
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| T |
38792448 |
aaaaacattgattaaaagatgaatcactaattttcattttctattttttccacttccatttaaaaaaaaaataaaaaaaatacttggcacgcttacaaat |
38792547 |
T |
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| Q |
98 |
cccaaagattcgaaaactttaaacctctaacaactgcgtaacaaactcacacgattacaaaatctctctaaccgtttcactcccccgcgcgcgcgtatat |
197 |
Q |
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| T |
38792548 |
cccaaa-attcgaaaactttaaacctctaacaaccgcgtaacaaactcacacgattacaaaatctctctaacagtttcactcccccgcgcgcgcgtatat |
38792646 |
T |
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| Q |
198 |
aagtacttcactctgcatttcatcctcattccattcattttccctctctcagaattgaaatcaaatcttcaatcactgcttcttctactttttctctaac |
297 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38792647 |
aagtacttcactctgcatttcatcctcgttccattcattttccctctctcagaattgaaatcaaatcttcaatcactgcttcttctactttttctcaaac |
38792746 |
T |
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| Q |
298 |
aaccatggcaagctctt |
314 |
Q |
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| T |
38792747 |
aaccatggaaagctctt |
38792763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 135 - 300
Target Start/End: Original strand, 38607185 - 38607350
Alignment:
| Q |
135 |
gtaacaaactcacacgattacaaaatctctctaaccgtttcactcccccgcgcgcgcgtatataagtacttcactctgcatttcatcctcattccattca |
234 |
Q |
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|||||||||||||||| |||||| || ||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38607185 |
gtaacaaactcacacgcttacaatatttctctaaccatttcactctcttgcgcgcgcgtatataagtacttcactctgcatttcatcctcattccattca |
38607284 |
T |
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| Q |
235 |
ttttccctctctcagaattgaaatcaaatcttcaatcactgcttcttctactttttctctaacaac |
300 |
Q |
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| T |
38607285 |
ttttccctctctcataattgaaatcaaatctttaatcaccgcttcttctacgttttctctaacaac |
38607350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 234
Target Start/End: Complemental strand, 38122351 - 38122216
Alignment:
| Q |
102 |
aagattcgaaaac-tttaaacctctaacaactgcgtaacaaactcacacgattacaaaa-tctct-ctaaccgtttcactcccccgcgcgcgcgtatata |
198 |
Q |
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||||||| ||||| |||||| || ||||||| |||||||||||||||||| |||||| | ||||| |||||||||| | | ||||||||||||||||||| |
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| T |
38122351 |
aagattcaaaaacgtttaaatctataacaaccgcgtaacaaactcacacgcttacaatactctcttctaaccgtttaatttccccgcgcgcgcgtatata |
38122252 |
T |
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| Q |
199 |
agtacttcactctgcatttcatcctcattccattca |
234 |
Q |
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| T |
38122251 |
aatacttcaccctgcaattcatcttcattcgattca |
38122216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38607654 - 38607715
Alignment:
| Q |
1 |
aaaaacattgattaaaa-gatgaatcattaattttcattttctatttttaccatttccattt |
61 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||||| |
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| T |
38607654 |
aaaaacattgattaaaaagatgaatcactaattttcattttctattttttccacttccattt |
38607715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38607054 - 38607114
Alignment:
| Q |
1 |
aaaaacattgattaaaagatgaatcattaattttcattttctatttttaccatttccattt |
61 |
Q |
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|||| ||||||| |||||||||||| |||||||||||||||||||||| || |||||||| |
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| T |
38607054 |
aaaatcattgataaaaagatgaatcgttaattttcattttctattttttacacttccattt |
38607114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 126 - 237
Target Start/End: Complemental strand, 28731892 - 28731779
Alignment:
| Q |
126 |
aacaactgcgtaacaaactcacacgattacaaaa-tctct-ctaaccgtttcactcccccgcgcgcgcgtatataagtacttcactctgcatttcatcct |
223 |
Q |
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|||||| |||||||||||| ||||| |||||| | ||||| |||||||||||| | |||||||||||||||||||| |||||||| |||||||||||| | |
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| T |
28731892 |
aacaaccgcgtaacaaactaacacgcttacaatactctcttctaaccgtttcatttccccgcgcgcgcgtatataaatacttcaccctgcatttcatcat |
28731793 |
T |
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| Q |
224 |
cattccattcattt |
237 |
Q |
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|||||||||||||| |
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| T |
28731792 |
cattccattcattt |
28731779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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