View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6638_low_15 (Length: 294)
Name: NF6638_low_15
Description: NF6638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6638_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 31821086 - 31821353
Alignment:
| Q |
20 |
tactatatagcatatagtatagtagaacactttcatcaatatattcagccnnnnnnnnnnnnnnn-ctaaatatatacagcattaaactgtgagaataca |
118 |
Q |
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| T |
31821086 |
tactatatagcatatagtatagtagaacactttcatcaatatattcagccaaaaaaaaatgaaaaactaaatatatacagcattaaactgtgagaataca |
31821185 |
T |
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| Q |
119 |
tgtatcttaatttcatcatctacaatgtggatgtaaataactcgattgatctgtgttaatattgcaggtgaaacgagctacacatgaaagccaaaatgca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31821186 |
tgtatcttaatttcatcatctacaatgtggatgtaaataactcgattgatctgtgttaatattgcaggtgaaacgagctacacatgaaagccaaaatgca |
31821285 |
T |
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| Q |
219 |
atttcagtggaggaaagttacaagctagcagcaggagaaattaggggacttttaatattttgatgatg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31821286 |
atttcagtggaggaaagttacaagctagcagcaggagaaattaggggacttttaatattttgatgatg |
31821353 |
T |
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